BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75010.1
Length=2493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926881 jgi|Araly1|926881|scaffold_202442.1 3539 0.0
> Ahg926881 jgi|Araly1|926881|scaffold_202442.1
Length=2261
Score = 3539 bits (1916), Expect = 0.0
Identities = 2151/2266 (95%), Gaps = 10/2266 (0%)
Strand=Plus/Plus
Query 96 TTCCGTAGAAGCGGAGCAATGCCGATTTCTATGGAACTTCCAGTTTTCTCTACTCTCCGA 155
|||||||| || ||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 4 TTCCGTAGGAGAAGAGCAATGCTGATTTCTATGGAGCTTCCAGTTTTCTCCACTCTCCGA 63
Query 156 GTACCATTGTTCTCTCGTTTAGCTTTACTTCCTACTTTTGGAGTTCCGTTTTCGTCCCTT 215
||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 64 GTACCATTGCTCTCTCGTTTAGCTCTAGTTCCTACTTTTGGAATTCCGTTTTCGTCCCTT 123
Query 216 GGTGCTACGACGCGATTGAACTGTACATCTCGAAAGGCGCGTCGGATTTGCGTGATGTGC 275
|||||| || |||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 124 GGTGCTTCGGCGCGATTGAATTATACCGCTCGAAAGGCGCGTCGGATTTGCGTGATGTGT 183
Query 276 TTAGTGAGGGATTCTGCTCCGATAGAGACGTGCGAGAGAGCTGGAGAAGATGGGTCTGAC 335
|| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 184 TTGGTGAGGGATTCGGCTCCCATGGAGACGTGCGAGAGAGCTGGAGAAGATGGGTCT--- 240
Query 336 GAGTTCATTGAGGTTC-TTGTCATCGGTAGTCGCAAGGAGTCTATCATGGATTCATGCTT 394
||||||||||||| || |||| |||||||||||||||||||||||||||||||| |||||
Sbjct 241 GAGTTCATTGAGG-TCGTTGTTATCGGTAGTCGCAAGGAGTCTATCATGGATTCTTGCTT 299
Query 395 GGATTCTCCTTTTCCTTCTCTTCCTCTGCGATTTTGGAGTATTAGCAAGGACAGCTCTGG 454
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 GGATTCTCCTTTCCCTTCTCTTCCTCTCCGATTTTGGAGTATTAGCAAGGACAGCTCTGG 359
Query 455 AGGTTTAGTGTTACAGCAGAGGCTCAATCACCAAGATAATGCCTT-GAAGACCATGAATC 513
|| |||||||||||||||||||||||| |||||||||||| ||| |||||||||||||
Sbjct 360 AGATTTAGTGTTACAGCAGAGGCTCAAACACCAAGATAAT-ACTTCAAAGACCATGAATC 418
Query 514 CAATTGAGCTGTTACAGTCACGTCCAAGGGCCTTCATCCTTGTGGCTAGTGCTGGATATG 573
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAATTGAGCTGATACAATCACGTCCAAGGGCCTTCATCCTTGTGGCTAGTGCTGGATATG 478
Query 574 GTTCTGACCAGGTTGAAGCTATTAATATTCTTAGTGCAGTAAGATCTGGGGGTAACTTAG 633
| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 479 GCTCTGACCAGGCTGAAGCTATTAATATTCTTAGTGCAGTAAGAACTGGGGGTAACTTAG 538
Query 634 CTGTTGCTGTGCTATTAAAGCCTTTCAGCTTTGAAGGCCGAAAGCGTCTAGAAGAGGTTA 693
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTGTTGCTGTGCTATTAAAACCTTTCAGCTTTGAAGGCCGAAAGCGTCTAGAAGAGGTTA 598
Query 694 ACGAGTTGGCTAGAAAACTGCAGCAACACACCAATTTCTGTATAGATATCGACATAGAGG 753
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACGAATTGGCTAGAAAACTGCAGCAACACACCAATTTCTGTATAGATATCGACATAGAGG 658
Query 754 TTTTACTACAGAAGGATTTGGTAACTTTGGACGAGGCGCTGAGAAATGCAAACAATGCTG 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTTTACTACAGAAGGATTTGGTAACTTTGGACGAGGCGCTGAGAAATGCAAACAATGCTG 718
Query 814 TGTCTATGGCAATAAATGCAGCTTCCGCTCTGATAAGTGGGATGCATGGAAACTTCATCG 873
| || |||||| | ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 719 TTTCCATGGCAGTGAATGCAGCTTCCGCTCTGATAAGTGAGATGCATGTAAACTTCATCG 778
Query 874 ATGTGATGCATAAAGATCTTAAAGAACTTGAAGGTTCAGAAGTTAAAACGATTCTAGAAA 933
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATGTGATGCATAAAGATCTCAAAGAACTTGAAGGTTCAGAAGTTAAAACGATTCTAGAAA 838
Query 934 GTTACAAAGAGGCAAAGGTTGGTTTTGGAGTTGGTCACAACCTTAAGACTTCGATATTAC 993
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 839 GCTACAAAGAGGCAAAGGTTGGTTTTGGAGTTGGTCACAACCTTAAGACTTCGATTTTAC 898
Query 994 GAGCTATATATGACTGCCCATTCTTTCGACCTGGTCTAAAGGATCTAAACGCTATTATAT 1053
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 899 GAGCTATATATGACTGCCCATTCTTTCGCCCTGGTCTAAAGGATCTAAACGCTATTATAT 958
Query 1054 GCATTGTGGCTAGTTCGGTACCTCTCCAGAAGAAAGACGTGAAAACAATTCTTCGTACTT 1113
|||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 959 GCATTGTGGCTAGTTCGGCACCTCTTCAGAAGAAGGACGTGAAAACAATTCTTCGTACTT 1018
Query 1114 TCCGTCAAACTATGGAGTACACTGGAGATATTATAGTATCTACTGTTCATGAGCCTGATC 1173
| |||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 1019 TACGTCAAACAATGGAGTATAGTGGAGATATTATAGTATCTACTGTTCATGAACCTGATC 1078
Query 1174 TGGAGCCTAAAGTGCGTGTCACAACGTTTTTTATTCTAAGTTCTTCAGAAGTGGAAACAT 1233
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1079 TGGAGCCTAAAGTGCGTGTCACAACGTTTTTTATTCTAAGTTCTTCAGAAGAGGAAACAT 1138
Query 1234 CCAACAAAGGCAACATTTTTTCTGGTCTTGTTCCTTTTGTTTTAAATATCTTCACGAGAT 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CCAACAAAGGCAACATTTTTTCTGGTCTTGTTCCTTTTGTTTTAAATATCTTCACGAGAT 1198
Query 1294 ATCGTTCACAGCTCCAAAAAGAAACAAATATTGGACTTGGAGAGACGCCAGTTTCAATTA 1353
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1199 ATCGTTCACAGCTCCAAAAAGAAACAAATAGTGGAATTGGAGAGACGCCAGTTTCAATTA 1258
Query 1354 AAGATTCAGCAGACTCTACTGACGTAAAAACTTCCAATCAGAATATTGAGGAATTTGAAA 1413
||| |||||||||||||| ||||||||||| ||| ||||||||| |||| ||||||||||
Sbjct 1259 AAGGTTCAGCAGACTCTATTGACGTAAAAAGTTCGAATCAGAATGTTGAAGAATTTGAAA 1318
Query 1414 TTGACTCTGAGGACCTCCTGGAAGTTTCTGAGAACGGTGATGATAGTGAATACCCATTAA 1473
||||||||||||||||||||||| ||||||||||| | | ||||||||||||| ||| ||
Sbjct 1319 TTGACTCTGAGGACCTCCTGGAAATTTCTGAGAAC-G-G-TGATAGTGAATACTCATCAA 1375
Query 1474 AAGAGGGGGAACCATCCAGAAACAGTCGTCTGGATCTTAAAGATGAAAATGTAGAAGATT 1533
|||||||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||
Sbjct 1376 AAGAGGGGGAACCATCCAGAAACAGTCGACTGGTTCTTGAAGATGAAAATATAGAAGATT 1435
Query 1534 TTGGTGCTATCCAGAGGGAGCCTATTGCCAATTGGAGTATGGATCAGGGATATCAGATTG 1593
|||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||
Sbjct 1436 TTGGTGCTATCCAGAGGGAGCCAATTGCCAATTGGAGTGTGGATCCGGGATATCAGATTG 1495
Query 1594 AGCAGAAATGGCAAGCTGATTCTGGAGACACTGCAGTGCTTAGCCTGGGAATTGTCAACC 1653
||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 1496 AGCAGAAATGGCAAGCTGATTCTGGAGACTCAGCAGTGCTTAGCCTGGGCATTGTCAACC 1555
Query 1654 TTCCTGTTGGTGTGAGACCTTCGAAGAAATTGAACAGTAATCTCAGTGTTGCCAGTCAAC 1713
|||||||||||||||||||||| ||||| |||||||||| ||| |||||||||||||||
Sbjct 1556 TTCCTGTTGGTGTGAGACCTTCAAAGAAGTTGAACAGTACTCTTGGTGTTGCCAGTCAAC 1615
Query 1714 TCTCTAGGAAGGCTGATTCCAGAGAAGAATCATTTTTCAACCCTAATGGCTCGACAAAAG 1773
|| | | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1616 CCTTTCGAAAGGCTGATTCCAGAGAAGAATCATTTGTCAACCCTAATGGGTCGACAAAAG 1675
Query 1774 ACTCTAGTGATACTGCATCTACCCTGCTATCTGAGAAATATGCTGATTTTACAAAGCAAA 1833
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1676 ACTCTAGTGATAATGCATCTACTCTGCTATCTGAGAAATATGCTGATTTTACAAAGCAAA 1735
Query 1834 GAAATCTATCCGCTCGAGCATCGTCTATGCTGGAAGCTGAACGAGATTCATCAAAAAGAT 1893
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1736 GAAATCTATCCGCTCGAGCAGCGTCTATGCTGGAAGCTGAACGAGATTCATCAAAGAGAT 1795
Query 1894 GGAGTCCTATTCTTGAGATGCAGTACAGAGGAGGACTTTTCAAGGGAAGATGCCAAGGAG 1953
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 GGAGCCCTATTCTCGAGATGCAGTACAGAGGAGGACTTTTCAAGGGAAGATGCCAAGGAG 1855
Query 1954 GCCTTCCCGAAGGAAAGGGTCGTTTGGTACTTGGAGATGGAAGCATATATGATGGAATGT 2013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 GCCTTCCCGAAGGAAAGGGTCGTTTGGTACTTGGAGATGGAAGCATATATGATGGAATGT 1915
Query 2014 GGCACAACGGTAAAAGATCTGGTCTCGGAACATTCTACTTCAAGAATGGAGACGTGTTCC 2073
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1916 GGCACAACGGCAAAAGATCTGGTCTTGGAACATTCTACTTCAAGAATGGAGACGTGTTCC 1975
Query 2074 AAGGCACATGGAGAGAAGATTTAATACACGGAAAGGGTTGGTTTTATTTCCACAAAGGTG 2133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 AAGGCACATGGAGAGAAGATTTAATACACGGAAAGGGTTGGTTTTATTTCCACAAAGGTG 2035
Query 2134 ATCGATGGTTTGCAAATTTCTGGAAAGGAAAAGCCAGTGGCGAAGGCCGGTTCTATTCAA 2193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 ATCGATGGTTTGCAAATTTCTGGAAAGGAAAAGCCAGTGGCGAAGGCCGGTTCTATTCAA 2095
Query 2194 AGTCCGGTGAGATATTCTTTGGACATTTCAAAGATGGTTGGCGCCACGGACAATTCCTCT 2253
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2096 AGTCCGGTGAGATATTCTTTGGACATTTCAAAGATGGATGGCGACACGGACAATTCCTCT 2155
Query 2254 GTATAGATTTGGATGGAACAAGATACTCTGAAACTTGGGACGACGGTGTTCTCATTGACC 2313
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 2156 GTATAGATGTGGATGGAACAAGATACTCCGAAACTTGGGATGACGGTGTTCTTATTGACC 2215
Query 2314 GGAAACAAGTGGACGCCGGAGATTGATATCATCCGGCAATGCTGTA 2359
|||||||| |||||| |||||||||||||| |||||||||| ||||
Sbjct 2216 GGAAACAAATGGACGGCGGAGATTGATATCGTCCGGCAATGTTGTA 2261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93968634415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5