BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75020.1
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476640 jgi|Araly1|476640|fgenesh2_kg.2__1770__AT1G75020.1 2119 0.0
> Ahg476640 jgi|Araly1|476640|fgenesh2_kg.2__1770__AT1G75020.1
Length=1332
Score = 2119 bits (1147), Expect = 0.0
Identities = 1279/1341 (95%), Gaps = 16/1341 (1%)
Strand=Plus/Plus
Query 12 TGAGATTCGCATTCCTCTGTTCTTCCACCATTTAACAATTATCCTCTTTTGTCTTCGCCA 71
|||||||||||||||||||||| | |||||||||||||||||||| || ||||||||||
Sbjct 1 TGAGATTCGCATTCCTCTGTTC-T--ACCATTTAACAATTATCCTC-TTCGTCTTCGCCA 56
Query 72 ACTTCTTCCGTTTCTTCATACTTCTCCA-GT-TTTGTCTTG-AGGTTTATCTGGAAAAAA 128
||||||| || |||||||||||||||| || ||| | || | |||| |||||||||||
Sbjct 57 ACTTCTTGCG-CTCTTCATACTTCTCCAGGTACTTG-C-TGCA-GTTTGTCTGGAAAAAA 112
Query 129 GATGGAAGTTTGCGGGGATCTGAAATCTGATAACTTAAAGAACCGCCCCTTGACTCCGCT 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 GATGGAAGTTTGCGGGGATCTGAAATCTGATAACTTAAAGAACCGCCCCTTGACTCCGCT 172
Query 189 TAGGATTCTGAGGGGCTTGATGATCCTGCTGGTGTTTCTGTCTACTGCTTTTATGTTTCT 248
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct 173 TAGGATTCTGAGGGGCTTGATGATTCTACTGGTGTTTCTCTCTACTGCTTTTATGTTCCT 232
Query 249 GCTGTACTTTGCACCAATAGCTGCTCTAGGTCTACGGCTTCTGAGTGTGCAACAATCTAG 308
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 233 GCTGTACTTTGCACCAATAGCTGCTCTAGGTCTACGGCTTCTGAGTGTGCATCAATCTAG 292
Query 309 AAAAGTTGTTTCGTTAATCTTTGGTCTCTGGTTAGCTTTGTGGCCTTACCTGTTTGAAAC 368
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AAAAGTTATATCGTTAATCTTTGGTCTCTGGTTAGCTTTGTGGCCTTACCTGTTTGAAAC 352
Query 369 GGTTAACGGGACAACTGTGGTGTTCTCTGGAGACATCATTCCGGTTGAGAAACGTGTTTT 428
|||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GGTTAATGGGACAACCGTGTTGTTCTCTGGAGACATCATTCCGGTTGAGAAACGTGTTTT 412
Query 429 GCTTATTGCAAATCACAGGACGGAGGTGGATTGGATGTATCTGTGGAATATTGCCTTGAG 488
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||
Sbjct 413 GCTTATTGCAAATCACAGGACAGAGGTGGATTGGATGTATTTGTGGAATATTGCCTTAAG 472
Query 489 AAAAGGCTGTCTTGGCTACATCAAATACGTGCTCAAGAGCAGCTTGATGAAATTACCTAT 548
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 AAAAGGGTGTCTTGGTTACATCAAATACGTGCTCAAGAGCAGCTTGATGAAATTACCTAT 532
Query 549 TTTTGGTTGGGGCTTT-CATGTTTTGGAATTTATCCCGGTGGAGAGGAAGCGGGAGGTCG 607
|||||| ||||| ||| ||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 533 TTTTGGCTGGGG-TTTCCATGTTTTGGAGTTTATACCAGTGGAGAGGAAGCGGGAGGTCG 591
Query 608 ACGAACCTGTTTTGCTTCAAATGCTTTCATCTTTTAAGGATCCTCAAGAACCCTTATGGC 667
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 592 ACGAACCTGTTTTGCTTCAAATGCTTTCATCGTTTAAGGATCCTCAAGAACCCTTATGGC 651
Query 668 TTGCTCTATTCCCTGAAGGAACCGATTTCACTGAAGAGAAATGCAAGAGAAGCCAAAAGT 727
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 652 TTGCTCTATTCCCGGAAGGAACCGATTTCACTGAAGAGAAATGCAAGAAAAGCCAAAAGT 711
Query 728 TTGCAGCTGAAGTTGGTCTTCCAGCACTATCAAACGTACTTCTACCAAAAACAAGGGGTT 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TTGCAGCTGAAGTTGGTCTTCCAGCACTATCAAACGTACTTCTACCAAAAACAAGGGGTT 771
Query 788 TTGGCGTTTGCTTAGAAGTTCTTCATAACTCTTTGGATGCAGTATATGATTTGACTATCG 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TTGGCGTTTGCTTAGAAGTTCTTCATAACTCTTTGGATGCAGTATATGATTTGACTATCG 831
Query 848 CATATAAACCTCGCTGCCCATCTTTCATGGACAATGTATTCGGGACGGATCCTTCAGAAG 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CATATAAACCTCGCTGCCCATCTTTCATGGACAATGTATTCGGGACGGATCCTTCAGAAG 891
Query 908 TACATATCCACGTTCGGCGAGTTCTACTAAAGGAGATTCCAGCAAACGAGGCAGAATCTT 967
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 892 TTCATATCCACGTTCGGCGAGTTCTTCTAAAGGAGATACCAGCAAACGAGGCAGAATCTT 951
Query 968 CTGCTTGGTTAATGGATTCATTTAAGTTGAAGGACAAACTGCTATCCGATTTCAATGCTC 1027
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 952 CTGCTTGGTTAATGGATTCATTTCAGTTGAAGGACAAACTGCTATCCGATTTCAATGCTC 1011
Query 1028 AGGGGAAATTCCCCAATCAAAGACCAGAAGAAGAACTCTCTGTTCTCAAGTGCATTGCAA 1087
||||| | ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 1012 AGGGGCAGTTCCCAAATCAAAGACCAGAAGAAGAACTGTCTGTTCTGAAGTGCATCGCAA 1071
Query 1088 CATTTGCAGGGGTAATATCTTTGACAGTAGTGTTCATATATCTGACCTTGTATTCACATA 1147
||||||| ||||||||||||||||||||| | ||||| ||||| ||||||||||||||||
Sbjct 1072 CATTTGCTGGGGTAATATCTTTGACAGTACTATTCATTTATCTAACCTTGTATTCACATA 1131
Query 1148 GCTGTTTCAAAGTATATGCTTGTCTAAGCGGCACATATTTAACTTTTGCTACATATTACA 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GCTGTTTCAAAGTATATGCTTGTCTAAGCGGCACATATTTAACTTTTGCTACATATTACA 1191
Query 1208 AGTTCCAACCCTCACCTGGCTGTTTTAGAGAAGATTCTTGTAAA---GTTAAAAACCATT 1264
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1192 AGTTCCGACCCTCACCTGGCTGTTTTAGAGAAGATTCTTGTAAACAAGTTAAAAACCATT 1251
Query 1265 AACTTTGTTGTAAATACAATTCTTTCTTTGTATACAAAGAAATAATATTACAGGCAGAAA 1324
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1252 AACTTTGTTGTAAATACAATTCTTTCTTTGTATAGAAAGAAATAATATTACAGGCAGAAA 1311
Query 1325 ATATCTCTGGGATGCCTTTTT 1345
| || ||||||||||||||||
Sbjct 1312 AGATTTCTGGGATGCCTTTTT 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50322250440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5