BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75030.1
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476641 jgi|Araly1|476641|fgenesh2_kg.2__1771__AT1G75030.1 1360 0.0
Ahg316436 jgi|Araly1|316436|fgenesh1_pm.C_scaffold_2001469 811 0.0
Ahg472154 jgi|Araly1|472154|fgenesh2_kg.1__2108__AT1G19320.1 198 5e-50
Ahg909394 jgi|Araly1|909394|Al_scaffold_0002_2475 60.2 3e-08
> Ahg476641 jgi|Araly1|476641|fgenesh2_kg.2__1771__AT1G75030.1
Length=863
Score = 1360 bits (736), Expect = 0.0
Identities = 824/867 (95%), Gaps = 4/867 (0%)
Strand=Plus/Plus
Query 1 ATCATCCACATCACATAAACACAAAATCCGGTTTTTAATAATGGCGAAAATCTCCAGTAT 60
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1 ATCATCCACATCACATAAACACAAAATCC--AATTT-GCAATGGCGAAAATCTCCAGTAT 57
Query 61 TCACATTCTCTTCTTCGTCTTCATCACAAGTGGCATTGCTGATTCCGCCACCGTATTCAC 120
|||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||
Sbjct 58 TCACATTCTCTTCTTCGTGTTCATCACAAGTGGCATTGCTGATGCCGCCACCGTGTTCAC 117
Query 121 TTTACAAAACAGTTGTGCGTACACCGTTTGGCCGGGAACTCTCTCCGGCAACAGCATCAC 180
||||| ||||||||| | |||||||| ||||||||||||||||||||||||||| ||||
Sbjct 118 TTTACTGAACAGTTGTTCTTACACCGTCTGGCCGGGAACTCTCTCCGGCAACAGCGTCAC 177
Query 181 CCTCGGCGACGGCGGATTTCCCTTAACTCCAGGCGCTTCCGTGCAGCTCACGGCTCCTAC 240
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 178 CCTCGGCGACGGCGGATTTCCCTTGACTCCAGGCGCTTCCGTACAGCTCACGGCTCCTAC 237
Query 241 CGGTTGGTCAGGCCGGTTCTGGGCTCGTACCGGCTGCAACTTTGACGCCTCCGGTCACGG 300
|| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 238 GGGATGGTCAGGCCGGTTCTGGGCTCGTACAGGCTGCAACTTTGATGCCTCCGGCCACGG 297
Query 301 TACCTGCGTCACCGGAGACTGCGGCGGCGTTTTAAAATGTACCGGCGGCGGAGTTCCTCC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TACCTGCGTCACCGGAGACTGCGGCGGCGTTTTAAAATGTACCGGCGGCGGAGTTCCTCC 357
Query 361 AGCGACTCTAGCGGAATTCACCGTGGGATCAAGCAATGCCGGCATGGATTTCTACGACGT 420
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 AGCGACTCTAGCCGAATTCACCGTCGGATCAAGCAATGCCGGCATGGATTTCTACGACGT 417
Query 421 GAGCCTCGTCGACGGTTACAATGTAAAGATGGGGATAAAACCACAGGGAGGATTCGGAAA 480
||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 418 GAGCCTCGTCGACGGATACAATGTCAAGATGGGGATTAAACCTCAAGGAGGATTCGGAAA 477
Query 481 TTGCAAATACGCAGGCTGCGTCTCGGACATCAACGAGATTTGCCCTAGCGAGCTTAGGAT 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 478 TTGCAAATACGCAGGCTGCGTCTCCGACATCAACGAGATTTGCCCTAGCGAGCTTAGGAT 537
Query 541 CATGGATCCGAATTCGGGAAGTGTCGCGGCGTGTAAGAGCGCTTGCGCGGCGTTTAGTTC 600
||||||||||||||| |||||| |||| ||||| ||||||||||| |||||||||| |||
Sbjct 538 CATGGATCCGAATTCAGGAAGTATCGCCGCGTGCAAGAGCGCTTGTGCGGCGTTTAATTC 597
Query 601 GCCGGAATTTTGCTGTACTGGTGCTCACGCGACGCCGCAAACTTGTTCTCCGACGTATTA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GCCGGAATTTTGCTGTACTGGTGCTCACGCGACGCCGCAAACTTGTTCTCCGACGTATTA 657
Query 661 CTCGTCCATGTTTAAGAACGCTTGTCCTAGCGCTTATAGTTACGCTTACGACGACGCATC 720
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 658 CTCGTCCATGTTTAAGAACGCTTGCCCTAGCGCTTATAGTTACGCTTACGACGACGCTTC 717
Query 721 GAGCACTTTCACTTGTACCGGATCTAACTACTTGATCACTTTCTGCCCTACCCAGTCTTA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GAGCACTTTCACTTGTACCGGATCTAACTACTTGATCACTTTCTGCCCTACCCAGTCTTA 777
Query 781 AAACCGGAGCTCCGGTTTAGATTTGGGTTGGGTTTCTCTCTCTCACGTTTCTTTTGCTTG 840
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 778 AA-CCGGAGCTCCGGTTTAGAATTGGGTTGGGTTTCTCTCTCTCACGTTTCTTTTGCTTG 836
Query 841 TTATGTACGGAAAGAGAAATAAAGAAA 867
||||||||||||||| |||||| ||||
Sbjct 837 TTATGTACGGAAAGATAAATAAGGAAA 863
> Ahg316436 jgi|Araly1|316436|fgenesh1_pm.C_scaffold_2001469
Length=738
Score = 811 bits (439), Expect = 0.0
Identities = 651/751 (87%), Gaps = 23/751 (3%)
Strand=Plus/Plus
Query 41 ATGGCGAAAAT-CTCCAGTATTCACATTCTCTTCTTCGTCTTCATCACAAGTGGCATTGC 99
|||||| || | ||| |||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1 ATGGCG-AATTACTCAAGTATTCACATTCTCTTCTTGGTCTTCATCACAAACGGCATTGC 59
Query 100 TGATTCCGCCACCGTATTCACTTTACAAAACAGTTGTGCGTACACCGTTTGGCCGGGAAC 159
|| |||||||||||| ||||| ||||| ||||||||| | |||||||||||||||||||
Sbjct 60 TGTTTCCGCCACCGTCTTCACATTACAGAACAGTTGTCCTTACACCGTTTGGCCGGGAAT 119
Query 160 TCTCTCCGGCAACAG-CATCACCCTCGGCGACGGCGGATTTCCCTTAACTCCAGGCGCTT 218
||||||||| ||| | || ||||||||||||||||||||||||||| ||||| |||||||
Sbjct 120 TCTCTCCGGTAAC-GACAACACCCTCGGCGACGGCGGATTTCCCTTGACTCCTGGCGCTT 178
Query 219 CCGTGCAGCTCACGGCTCCTACCGGTTGGTCAGGCCGGTTCTGGGCTCGTACCGGCTGCA 278
|||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct 179 CCGTACAGCTCACGGCTCCTGCTGGATGGTCAGGCCGGTTCTGGGCTCGTACCGGCTGCA 238
Query 279 ACTTTGACGCCTCCGGTCACGGTACCTGCGTCACCGGAGACTGCGGCGGCGTTTTAAAAT 338
|||| ||||||||||| ||||||| ||||||||||||||||||||| |||||| ||||||
Sbjct 239 ACTTCGACGCCTCCGGCCACGGTAACTGCGTCACCGGAGACTGCGGTGGCGTTCTAAAAT 298
Query 339 GTACCGGCGGCGGAGTTCCTCCAG-CGACTCTAGCGGAATTCAC-CGTGGGATCAAGCAA 396
||| ||||||||||||||| |||| | ||||| || |||||||| | | | | || |
Sbjct 299 GTAACGGCGGCGGAGTTCCACCAGTC-ACTCTTGCTGAATTCACAC-TCGT-TG--GCGA 353
Query 397 TGCCGGCATGGATTTCTACGACGTGAGCCTCGTCGACGGTTACAATGTAAAGATGGGGAT 456
|| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 354 TGGCGGCAAGGATTTCTACGACGTGAGCCTCGTCGACGGTTACAATGTCGAGATGGGGAT 413
Query 457 AAAACCACAGGGAGGATTC-GGAAATTGCAAATACGCAGGCTGCGTCTCGGACATCAACG 515
||||| || ||||| ||| || ||||| | ||||| ||||| ||| | ||| ||||||
Sbjct 414 TAAACCTCAAGGAGG-TTCCGGTGATTGCCATTACGCCGGCTGTGTCGCCGACGTCAACG 472
Query 516 AGATTTGCCCTAGCGAGCTTAGGATCATGGATCCGA-ATTCGGGAAGTG-TCGCGGCGTG 573
| |||| |||| ||||||| ||||||||||||| | || | |||| | ||||||||||
Sbjct 473 CGGTTTGTCCTAACGAGCTTCGGATCATGGATCC-ACATACCGGAA-TCATCGCGGCGTG 530
Query 574 TAAGAGCGCTTGCGCGGCGTTTAGTTC-GCCGGAATTTTGCTGTACTGGTGCTCACGCGA 632
||| |||||||| |||||||||| ||| | |||||| || ||||| |||||||||||||
Sbjct 531 TAAAAGCGCTTGTGCGGCGTTTAATTCTGA-GGAATTCTGTTGTACCGGTGCTCACGCGA 589
Query 633 CGCCGCAAACTTGTTCTCCGACGTATTACTCGTCCATGTTTAAGAA-CGCTTGTCCTAGC 691
||||||||||||| ||||||||| |||||||| | |||||||| || |||||| ||| ||
Sbjct 590 CGCCGCAAACTTGCTCTCCGACGCATTACTCGGCGATGTTTAA-AAGCGCTTGCCCTGGC 648
Query 692 GCTTATAGTTACGCTTACGACGACGC-ATCGAGCACTTTCACTTGTACCGGATCTAACTA 750
|||||||||||||| || |||||||| | | ||||| |||||||||||||||||||||||
Sbjct 649 GCTTATAGTTACGCCTATGACGACGCCA-CAAGCACCTTCACTTGTACCGGATCTAACTA 707
Query 751 CTTGATCACTTTCTGCCCTACCCAGTCTTAA 781
||||||| |||||||||| |||| |||||||
Sbjct 708 CTTGATCTCTTTCTGCCCCACCCGGTCTTAA 738
> Ahg472154 jgi|Araly1|472154|fgenesh2_kg.1__2108__AT1G19320.1
Length=799
Score = 198 bits (107), Expect = 5e-50
Identities = 510/696 (73%), Gaps = 62/696 (9%)
Strand=Plus/Plus
Query 104 TCCGCCACCGTA-TTCA-CTTTACAAAACAGTTG-TGCGTACACCGTTTGGCCGGGAACT 160
|||| ||||| | |||| ||| ||||| || || || | |||| | ||||| |||| |
Sbjct 75 TCCGGCACCG-ACTTCACCTTAACAAACCA-CTGCAGC-TCCACCATCTGGCCTGGAA-T 130
Query 161 -CTCTCCGGC-AACAGCATCACC-CTCGGCGACGGCGGATTTCCCTTAACTC-CAGGCGC 216
||| || || ||| ||| |||| ||||||||||||| ||| ||||| | | ||||| |
Sbjct 131 CCTCACC-GCAAACGGCA-CACCAATCGGCGACGGCGGTTTTGCCTTAGC-CGCAGGCTC 187
Query 217 TTCCGTGCAGC-TCACGGCTCCTACC-GGTTGGTCAGGCCGGTTCTGGGCTCGTACCGGC 274
|||||| || | | || | | || || || ||||| || || ||||||| | | || |||
Sbjct 188 TTCCGT-CACCTTAACCGTTTCT-CCTGGCTGGTCCGGTCGATTCTGGGGTAGAACGGGC 245
Query 275 TGCAACTTTGACGCCTCCGG-TCACGGTACCTGCGTCACCGGAGACTGCGGCGGCGTTTT 333
|||||||| ||||| ||||| || ||| | ||| |||||||||||||||||| ||
Sbjct 246 TGCAACTTCGACGCATCCGGTTC-CGGAAAATGCACCACCGGAGACTGCGGCGGTAAGTT 304
Query 334 AAAATGTACC-G-GC-GGCGGAGTTCCTCCAGCGACTCTAGCGGAATTCACCGT-GG--G 387
|||||| || | || || |||| ||| ||||| || || || |||||||| | ||
Sbjct 305 AAAATGCGCCGGCGCAGGAGGAGCTCCACCAGCCACACTCGCAGAATTCACAATCGGCTC 364
Query 388 AT-C---AAG--CAATGCCG-GCATGGATTTCTACGACGTGAGCCTCGTCGACGGTTACA 440
|| | ||| || || | ||| ||||||||||||||||||||||||||||||||||
Sbjct 365 ATCCGGAAAGAAAAACGCAGTGCA-AGATTTCTACGACGTGAGCCTCGTCGACGGTTACA 423
Query 441 ATGTAAAGATGGGGATAAAACCACAGGGAGGATTC-GGAAATTG-CAAATACGCAGGCTG 498
| || ||||| || | ||| || || || | | || ||||| |||| ||| || ||
Sbjct 424 ACGTTCAGATGAAAATCACACCGCAAGGTGGCT-CAGGCAATTGTCAAAC-CGCGGGATG 481
Query 499 CGTCTCGGACATCAACGAGATTTGCCCTAGCGAGCTTA-G-GATCATGGAT-CCGAATTC 555
||| |||||| | |||| |||||| || | |||||| | | | | | ||| ||| |
Sbjct 482 CGTTTCGGACGTGAACGCGATTTGTCCAAACGAGCT-ACGCGTT-ACGGACGCCG----C 535
Query 556 GGGAAGTGTCGCGGCGTGTAAGAGCGCTTGCGCGGCGTTTAGTTCGCCGGAATTTTGCTG 615
||| || | | |||||||||||| ||||| | ||| |||| | |||||| | ||| ||
Sbjct 536 GGGT-GT-T-GTGGCGTGTAAGAGTGCTTGTGAGGCTTTTAATAAGCCGGAGTATTGTTG 592
Query 616 TACTGGTGC-TC-ACGCGACGCCG-CAAACTTGTTCTCCGACGTATTACTCGTCCATGTT 672
|| || || | | | || ||| | | ||||| | |||||| |||||||| || ||
Sbjct 593 CACCGGCGCGTATA-GT-ACACCGGCTA-CTTGTCCGCCGACGAATTACTCGAAGATATT 649
Query 673 TAAG-AACGCTTGTCCTAGCGCTTATAGTTACGCTTACGACGACGCATCGAGCACTTTCA 731
||| || |||||||| || || ||||| || || ||||| || || ||||| ||||| |
Sbjct 650 TAAACAA-GCTTGTCCAAGTGCGTATAGCTATGCATACGATGATGCTTCGAGTACTTTTA 708
Query 732 CTTGTACCGGAT-CTAACTACT-TGATCACTTTCTG 765
||||||| || |||| || | |||||| ||||||
Sbjct 709 CTTGTACTA-ATGCTAATTA-TGTGATCAGTTTCTG 742
> Ahg909394 jgi|Araly1|909394|Al_scaffold_0002_2475
Length=777
Score = 60.2 bits (32), Expect = 3e-08
Identities = 37/39 (95%), Gaps = 2/39 (5%)
Strand=Plus/Plus
Query 405 TGGATTTCTACGACGTGAGCCTCGTCGACGG-TTACAAT 442
||||||||||||||||||||||||||||||| || ||||
Sbjct 416 TGGATTTCTACGACGTGAGCCTCGTCGACGGATT-CAAT 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33700658628
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5