BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75050.1
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316436 jgi|Araly1|316436|fgenesh1_pm.C_scaffold_2001469 1177 0.0
Ahg476641 jgi|Araly1|476641|fgenesh2_kg.2__1771__AT1G75030.1 811 0.0
> Ahg316436 jgi|Araly1|316436|fgenesh1_pm.C_scaffold_2001469
Length=738
Score = 1177 bits (637), Expect = 0.0
Identities = 703/735 (96%), Gaps = 3/735 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAATTACTCAAGTATTCACATTCTCTTCTTGGTCTTCATCACAAGCGGCATTGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGCGAATTACTCAAGTATTCACATTCTCTTCTTGGTCTTCATCACAAACGGCATTGCT 60
Query 61 GTTTCCGCCGCCACCGTCTTCACTTTACAGAACAGTTGTCCTTACACCGTTTGGCCTGGA 120
|||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 61 GTTT---CCGCCACCGTCTTCACATTACAGAACAGTTGTCCTTACACCGTTTGGCCGGGA 117
Query 121 ATTCTCTCCGGCAACGACAACACCCTCGGCGACGGCGGATTTCCCTTAACACCAGGCGCT 180
||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 118 ATTCTCTCCGGTAACGACAACACCCTCGGCGACGGCGGATTTCCCTTGACTCCTGGCGCT 177
Query 181 TCCGTACAGCTCACGGCTCCTGCAGGATGGTCAGGACGGTTCTGGGCTCGTACCGGCTGC 240
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 178 TCCGTACAGCTCACGGCTCCTGCTGGATGGTCAGGCCGGTTCTGGGCTCGTACCGGCTGC 237
Query 241 AACTTCGACGCCTCCGGCCACGGTAACTGCGGCACCGGAGACTGCGGCGGTGTTCTTAAA 300
||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||
Sbjct 238 AACTTCGACGCCTCCGGCCACGGTAACTGCGTCACCGGAGACTGCGGTGGCGTTCTAAAA 297
Query 301 TGTAACGGCGGCGGAGTTCCACCAGTCACTCTGGCTGAATTCACACTTGTAGGCGACGGC 360
|||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||
Sbjct 298 TGTAACGGCGGCGGAGTTCCACCAGTCACTCTTGCTGAATTCACACTCGTTGGCGATGGC 357
Query 361 GGCAAGGATTTCTACGACGTGAGTCTCGTCGACGGTTACAATGTCGAGATGGGGATTAAA 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 358 GGCAAGGATTTCTACGACGTGAGCCTCGTCGACGGTTACAATGTCGAGATGGGGATTAAA 417
Query 421 CCTCAAGGAGGTTCCGGTGATTGCCATTACGCCGGCTGCGTCGCCGACGTCAACGCGGTT 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 CCTCAAGGAGGTTCCGGTGATTGCCATTACGCCGGCTGTGTCGCCGACGTCAACGCGGTT 477
Query 481 TGCCCTAACGAGCTTCGGCTCATGGATCCACATACAGGAATCATCGCGGCGTGTAAAAGC 540
|| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 478 TGTCCTAACGAGCTTCGGATCATGGATCCACATACCGGAATCATCGCGGCGTGTAAAAGC 537
Query 541 GCTTGTGCGGCGTTTAATTCTGAGGAGTTCTGTTGTACCGGTGCTCACGCGACGCCGCAA 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 GCTTGTGCGGCGTTTAATTCTGAGGAATTCTGTTGTACCGGTGCTCACGCGACGCCGCAA 597
Query 601 ACTTGTTCTCCGACGCATTACTCGGCGATGTTTAAAAGCGCTTGCCCTGGTGCTTACAGT 660
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 598 ACTTGCTCTCCGACGCATTACTCGGCGATGTTTAAAAGCGCTTGCCCTGGCGCTTATAGT 657
Query 661 TACGCCTACGACGACGCCACGAGCACCTTCACTTGTACCGGCTCTAACTACTTGATCTCT 720
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 658 TACGCCTATGACGACGCCACAAGCACCTTCACTTGTACCGGATCTAACTACTTGATCTCT 717
Query 721 TTCTGCCCCACCCGG 735
|||||||||||||||
Sbjct 718 TTCTGCCCCACCCGG 732
> Ahg476641 jgi|Araly1|476641|fgenesh2_kg.2__1771__AT1G75030.1
Length=863
Score = 811 bits (439), Expect = 0.0
Identities = 648/746 (87%), Gaps = 26/746 (3%)
Strand=Plus/Plus
Query 1 ATGGCG-AATTACTCAAGTATTCACATTCTCTTCTTGGTCTTCATCACAAGCGGCATTGC 59
|||||| || | ||| |||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 38 ATGGCGAAAAT-CTCCAGTATTCACATTCTCTTCTTCGTGTTCATCACAAGTGGCATTGC 96
Query 60 TGTTTCCGCCGCCACCGTCTTCACTTTACAGAACAGTTGTCCTTACACCGTTTGGCCTGG 119
|| | ||||||||||| |||||||||| |||||||||| |||||||||| ||||| ||
Sbjct 97 TG-AT--GCCGCCACCGTGTTCACTTTACTGAACAGTTGTTCTTACACCGTCTGGCCGGG 153
Query 120 AATTCTCTCCGGCAACGA-CAACACCCTCGGCGACGGCGGATTTCCCTTAACACCAGGCG 178
|| ||||||||||||| | | ||||||||||||||||||||||||||| || |||||||
Sbjct 154 AACTCTCTCCGGCAAC-AGCGTCACCCTCGGCGACGGCGGATTTCCCTTGACTCCAGGCG 212
Query 179 CTTCCGTACAGCTCACGGCTCCTGCAGGATGGTCAGGACGGTTCTGGGCTCGTACCGGCT 238
||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||||
Sbjct 213 CTTCCGTACAGCTCACGGCTCCTACGGGATGGTCAGGCCGGTTCTGGGCTCGTACAGGCT 272
Query 239 GCAACTTCGACGCCTCCGGCCACGGTAACTGCGGCACCGGAGACTGCGGCGGTGTTCTT- 297
||||||| || |||||||||||||||| ||||| |||||||||||||||||| ||| ||
Sbjct 273 GCAACTTTGATGCCTCCGGCCACGGTACCTGCGTCACCGGAGACTGCGGCGGCGTT-TTA 331
Query 298 AAATGTAACGGCGGCGGAGTTCCACCAGTC-ACTCTGGCTGAATTCACAC-T-TG-T-AG 352
||||||| ||||||||||||||| |||| | ||||| || |||||||| | | | | |
Sbjct 332 AAATGTACCGGCGGCGGAGTTCCTCCAG-CGACTCTAGCCGAATTCAC-CGTCGGATCAA 389
Query 353 GCGACGGCGGCAAGGATTTCTACGACGTGAGTCTCGTCGACGGTTACAATGTCGAGATGG 412
|| | | ||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 390 GCAATGCCGGCATGGATTTCTACGACGTGAGCCTCGTCGACGGATACAATGTCAAGATGG 449
Query 413 GGATTAAACCTCAAGGAGG-TTCCGGTGATTGCCATTACGCCGGCTGCGTCGCCGACGTC 471
||||||||||||||||||| || ||| ||||| | ||||| ||||||||| ||||| ||
Sbjct 450 GGATTAAACCTCAAGGAGGATT-CGGAAATTGCAAATACGCAGGCTGCGTCTCCGACATC 508
Query 472 AACGCGGTTTGCCCTAACGAGCTTCGGCTCATGGATCC-ACATACAGGAA-TCATCGCGG 529
|||| | ||||||||| ||||||| || |||||||||| | || |||||| | ||||| |
Sbjct 509 AACGAGATTTGCCCTAGCGAGCTTAGGATCATGGATCCGA-ATTCAGGAAGT-ATCGCCG 566
Query 530 CGTGTAAAAGCGCTTGTGCGGCGTTTAATTCTG-AGGAGTTCTGTTGTACCGGTGCTCAC 588
|||| || ||||||||||||||||||||||| | ||| || || ||||| |||||||||
Sbjct 567 CGTGCAAGAGCGCTTGTGCGGCGTTTAATTC-GCCGGAATTTTGCTGTACTGGTGCTCAC 625
Query 589 GCGACGCCGCAAACTTGTTCTCCGACGCATTACTCGGCGATGTTTAA-AAGCGCTTGCCC 647
||||||||||||||||||||||||||| |||||||| | |||||||| || |||||||||
Sbjct 626 GCGACGCCGCAAACTTGTTCTCCGACGTATTACTCGTCCATGTTTAAGAA-CGCTTGCCC 684
Query 648 TGGTGCTTACAGTTACGCCTACGACGACGCCACGAGCACCTTCACTTGTACCGGCTCTAA 707
| | ||||| |||||||| ||||||||||| ||||||| |||||||||||||| |||||
Sbjct 685 TAGCGCTTATAGTTACGCTTACGACGACGCTTCGAGCACTTTCACTTGTACCGGATCTAA 744
Query 708 CTACTTGATCTCTTTCTGCCCCACCC 733
|||||||||| |||||||||| ||||
Sbjct 745 CTACTTGATCACTTTCTGCCCTACCC 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27296008572
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5