BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75060.1
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476644 jgi|Araly1|476644|fgenesh2_kg.2__1774__AT1G75060.2 1400 0.0
Ahg472155 jgi|Araly1|472155|fgenesh2_kg.1__2109__AT1G19330.1 586 1e-166
> Ahg476644 jgi|Araly1|476644|fgenesh2_kg.2__1774__AT1G75060.2
Length=1084
Score = 1400 bits (758), Expect = 0.0
Identities = 891/952 (94%), Gaps = 22/952 (2%)
Strand=Plus/Plus
Query 217 AAATGCTGGAAGCTCCGGTGAACAAGTCAAGCATCCTCAAT------GGAGGAGGAGGAG 270
|||||||||||||| || |||||| ||||||||||||||| |||||||||||||
Sbjct 136 AAATGCTGGAAGCTGCGAAGAACAACTCAAGCATCCTCAATGGAGGAGGAGGAGGAGGAG 195
Query 271 GATTCTCTCAGCTACAGAGTTGCTTCGGCGATTGCAGTAGCGAAGAAGAATTGTCAGTGT 330
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 196 GATTCTCTCAGCTACAAAGTTGCTTCGGCGATTGCAGTAGCGAAGAAGAATTATCTGTGT 255
Query 331 TGCCACGTCATACCAAAGTTGTCGTTACTGGAAACAACCGTACCAAATCTGTTCTCGTCG 390
||||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||
Sbjct 256 TGCCACGTCATACCAAAGTCATCGTTACCGGAAACAACCGTACCAAATCCGTACTCGTCG 315
Query 391 GTCTTCAAGGCGTCGTTAAGAAAGCCGTCGGACTCGGTGGTTGGCATTGGCTGGTTTTGA 450
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 316 GTCTTCAAGGCGTCGTTAAAAAAGCCGTCGGACTCGGTGGTTGGCATTGGCTGGTTCTGA 375
Query 451 CTAATGGAATTGAAGTGAAGTTGCAGAGGAATGCGCTTAGTGTTCTTGAACATCCTACAG 510
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 376 CAAATGGCATAGAAGTGAAGTTGCAGAGGAATGCGCTTAGTGTTCTTGAACATCCTATAG 435
Query 511 GGAACGAAGAAGACAATGATCTTGAAGTCGACCATTCTACACAGTGGAATCATCCCTCCG 570
||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||
Sbjct 436 GGAACGAAGAAGACAATGATCTTGAAGTCGACCATACTACACAGTGGAATAATCCTTCCG 495
Query 571 ATATGACAACTGAGGACACTTTGAAGCCTCATAAGTCGAAGAAGAGAGGACACAGATCAT 630
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 496 ATATGACAACTGAGGACACTTTGAAGCCTCATAAGTCGAAGCAGAGAGGACACAGATCAT 555
Query 631 CGCGGTTATCTCAAAAGGCTTTGTACAGGGAAGTTTCTTGTGACTCACACTCAAAAATCT 690
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 556 CGCGGTTATCTCAAAAGGCTTTGTGCAGGGCAGTTTCTTGTGACTCACACTCAAAAAACT 615
Query 691 CGAGTATTACTCCTCGTC-TGAACATGAAGGTTGATCTTACCAAGTTGGATATGGCTGCA 749
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 616 CGAGTATTACTCCTCG-CATGAACATGAAGGTTGATCTTACCAAGTTGGATATGGCTGCA 674
Query 750 TTACTGAGATATTGGCGACATTTTAACCTCGTGGATGCTCTTCCGAATCCCACAAAGGAG 809
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 675 TTACTGAGATATTGGCGACATTTTAACCTCGTGGATGCTCTTCCAAATCCAACAAAGGAG 734
Query 810 CAACTAATTGACATTATTCAGAGACACTTCATGTCTCAGCAAATGGATGAGCTTCAGGTT 869
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CAACTGATTGACATTATTCAGAGACACTTCATGTCTCAGCAAATGGATGAGCTTCAGGTT 794
Query 870 ATTGTGGGATTCGTTCAGGCTGCAACAGGAATGAAGAAGGCTTGCCAAGTGGAAGACCAA 929
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 795 ATCGTGGGATTCGTTCAGGCTGCAACAGGAATGAAGAAGGCTTGCCAAGTGGAAG-CCAA 853
Query 930 A-GAAGCCAGAAACACTGATCCTTAACTGCATCAGCTAAATCTCCTTTAATAGACTAACA 988
| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 854 AAGAAGCCAGAAACACTGATCTTTAACTGCATCAGCTAAATATCCTTCAATAGACTAACA 913
Query 989 AA--T------A-TCTGCGCGGGTCACATGTTTTAATCATTCCGCGGCTTAAAAAGTTTG 1039
|| | | ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 914 AAAATCTGTCGAATCTGCGCGGGTCACATGTTTTAACCATTCCGCGGCTTAAAAAGTTTG 973
Query 1040 GGTAAA-TAGTTTAGCTCTCTCTCTTTTGG-TAAACACTAGTAGTTGTTATTGCTCTCTC 1097
||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 974 AGTATAGTAGTTTAGCTCTCTCTCTTTTGGGTAAACACTAGTAGTTGTTATTGCTCTCTC 1033
Query 1098 ATGTAATTAGGTCCATCAAGAACAAAATGATATGAAACAAAGAAAATCTCTA 1149
|||||| || ||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 1034 ATGTAAGTAAGTC-ATCAGGAACAAAATGACATGAAACAAAGAAAATCTCTA 1084
Score = 185 bits (100), Expect = 5e-46
Identities = 128/140 (91%), Gaps = 7/140 (5%)
Strand=Plus/Plus
Query 8 ACTCTGCTTTTTCCTCTTTCTTCTCTCACTCTTACTCTGTCTTTCTTCATCAGACCAAAA 67
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTCTGCTTTTTCCTCTTTC-TCTCTCACTCTTACTCTGTCTTTCTTCATCAGACCAAAA 59
Query 68 ACAAACCCTAATTTC-TCAGCTCGATTTCTCTCTTACTCCATTTCTCAATCCTT-CACAA 125
| || |||||||||| | |||||||||||||||||| | ||| ||||||||||| | |||
Sbjct 60 A-AA-CCCTAATTTCGT-AGCTCGATTTCTCTCTTATTTCATCTCTCAATCCTTTC-CAA 115
Query 126 AATGCACCAACTTCCATTTC 145
|||||| |||||||| ||||
Sbjct 116 AATGCAACAACTTCCGTTTC 135
> Ahg472155 jgi|Araly1|472155|fgenesh2_kg.1__2109__AT1G19330.1
Length=1188
Score = 586 bits (317), Expect = 1e-166
Identities = 601/731 (82%), Gaps = 48/731 (7%)
Strand=Plus/Plus
Query 267 GGAGGATTCTCTCAGCTACAGAG-TTGCTT-CGGCGATTGCAGTAGCGAAGAAGAATTGT 324
||||||||| | ||| ||||||| || || ||||||||||||||| |||||||| || |
Sbjct 245 GGAGGATTCCCACAGATACAGAGCTT--TTACGGCGATTGCAGTAGTGAAGAAGAGTTAT 302
Query 325 CAGTGTTGCCACGTCATACCAAAGTTGTCGTTACTGGAAACAACCGTACCAAATCTGTTC 384
|||| |||||||||||||| ||||| || || || |||||||||||||| ||||| || |
Sbjct 303 CAGTTTTGCCACGTCATACAAAAGTGGTGGTCACCGGAAACAACCGTACGAAATCGGTGC 362
Query 385 TCGTCGGTCTTCAAGGCGTCGTTAAGAAAGCCGTCGGACTCGGTGGTTGGCATTGGCTGG 444
| || ||||||||||| || ||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 363 TTGTTGGTCTTCAAGGTGTTGTTAAAAAAGCTGTCGGTCTCGGTGGTTGGCATTGGCTGG 422
Query 445 T---TTTGACTAATGGAATTGAAGTGAAGTTGCAGAGGAATGCGCTTAGTGTTCTTGAAC 501
| ||||| ||||| || ||||| || ||||||||||||||||||||||| |||||||
Sbjct 423 TAAAGTTGACAAATGGCATAGAAGTAAAATTGCAGAGGAATGCGCTTAGTGTCCTTGAAC 482
Query 502 ATCCTACAGGGAACGAAGAAGACAATGATCTTGAAGTCGACCATTCTACACAGTGGAATC 561
||||||| || |||||||||||| |||||||||| |||| | | |||||| || |
Sbjct 483 ATCCTACTGGAAACGAAGAAGACGATGATCTTGATTTCGA--AAAC-ACACAGAGG-A-- 536
Query 562 ATCCCTCCGATATGA------------CA--A-CTGAGGACACTTTGAAGCCTCATAAGT 606
|| ||||||||||| || | |||||||||| |||||||||||||||
Sbjct 537 ATGGCTCCGATATGATTGTTTCTTTTCCAGCATCTGAGGACACGCTGAAGCCTCATAAGT 596
Query 607 CGAAG-AAGAGAGGACACAGATCATCGCGGTTATCTCAAAAGGCTTTGTA-CAGGGAAGT 664
||||| || ||||| || ||||||||||||| |||||| ||| | || | || || |
Sbjct 597 CGAAGCAA-AGAGGGCAGAGATCATCGCGGTCATCTCACAAGACAATG-AGCA--GATCT 652
Query 665 -T-TCTTGTGACTCACACTCAAAAA-TCTCGAGTATTACTCCTCGTCTGAACATGAAGGT 721
| || | |||||| || ||||||| | ||| || ||||||| ||| |||||||||||
Sbjct 653 CTATCATCTGACTCGCAATCAAAAAGT-TCGGGTTTTACTCCCCGTGAAAACATGAAGGT 711
Query 722 TGATCTTACCAAGTTGGATATGGCTGCATTACTGAGA-TATTGGCGACATTTTAACCTCG 780
|||||| | ||| ||||| ||| | || ||||||| | |||||||||||||||||||| |
Sbjct 712 TGATCTAAGCAAATTGGAAATGCCCGCTTTACTGA-ATTATTGGCGACATTTTAACCTTG 770
Query 781 TGGATGCTCTTCCGAATCCCA-CAAAGGAGCAACTAATTGACATTATTCAGAGACACTTC 839
||||||| |||| ||| ||| ||||||||||||||||||||||| |||| || ||||||
Sbjct 771 TGGATGCAATTCCTAAT-CCATCAAAGGAGCAACTAATTGACATTGTTCAAAGGCACTTC 829
Query 840 ATGTCTCAGCAAATGGATGAGCTTCAGGTTATTGTGGGATTCGTTCAGGCTGCAACAG-G 898
|||||||||||||||||||||||||||||||||||||| || || || ||||||| || |
Sbjct 830 ATGTCTCAGCAAATGGATGAGCTTCAGGTTATTGTGGGGTTTGTCCAAGCTGCAA-AGAG 888
Query 899 AATGAAGAAGGCTTGCCAAGTGGAAGACC-AAAGAAGCCAGAAACACTGATCCTTAACTG 957
|||||||||||| ||| |||| | | | | |||||||||||||||||||||| |||||||
Sbjct 889 AATGAAGAAGGCATGC-AAGTTGCA-ATCGAAAGAAGCCAGAAACACTGATC-TTAACTG 945
Query 958 CATCAGCTAAA 968
|||||||||||
Sbjct 946 CATCAGCTAAA 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43002650376
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5