BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75080.1
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476647 jgi|Araly1|476647|fgenesh2_kg.2__1777__AT1G75080.2 1934 0.0
Ahg472158 jgi|Araly1|472158|fgenesh2_kg.1__2112__AT1G19350.4 968 0.0
> Ahg476647 jgi|Araly1|476647|fgenesh2_kg.2__1777__AT1G75080.2
Length=1526
Score = 1934 bits (1047), Expect = 0.0
Identities = 1199/1270 (94%), Gaps = 20/1270 (2%)
Strand=Plus/Plus
Query 25 TTGGAGAAGAAAGAGAGATTCTTCTTCTTCGATTCCAGCGAAGGAAAAGCGTATTCCTCG 84
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 4 TTGGAGAAGAAAGAGAGA---TTCTGCTTCGATTCCAGCGAAGGAAAAGCGTATTCCTCG 60
Query 85 TGAGCACTAACTTCTCACTCCTCTCTTCTTCTTCTTCATCAGTCTACGTTCACACAATCT 144
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TGAGCACTAACTTCTCACTCCTCTCTTCTTCTTCTTCTTCAGTCTACGTTCACACAATCT 120
Query 145 TTCACCCACCTATTCAAAGCTCTCTCCGGAAGTTTCGAGGGGTTGGTTGTTGGTTTTCCC 204
|||||||||| ||| |||||||||| |||| ||||||| || || |||||||| |
Sbjct 121 TTCACCCACCCATTTAAAGCTCTCT-CGGAGGTTTCGA--GG--GG--CTTGGTTTT-CT 172
Query 205 GATGACTTCGGATGGAGCTACGTCGACATCAGCAGCTGCAGCTGCGGCGGCGGCAGCAGC 264
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 173 GATGACGTCGGATGGAGCTACGTCGACATCAGCAGCTGCGGCTGCGGCGGCGGCAGCAGC 232
Query 265 GGCgaggaggaagccgtcgtggagagaaagggagaataatcggaggagagaaagacggag 324
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 233 GGCGAGGAGGAAGCCGTCGTGGAGGGAAAGGGAGAATAATCGGAGGAGAGAGAGACGGAG 292
Query 325 aagagCTGTAGCTGCGAAGATATACACTGGGCTTAGAGCTCAAGGTGATTATAATTTGCC 384
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 293 AAGAGCTGTAGCTGCGAAGATATATACTGGGCTTAGAGCTCAAGGTGATTATAATTTGCC 352
Query 385 TAAACATTGTGATAATAATGAAGTCCTTAAAGCTCTTTGTGTTGAAGCTGGTTGGGTTGT 444
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 353 TAAACATTGTGATAATAATGAAGTCCTCAAAGCTCTTTGTGTTGAAGCTGGTTGGGTTGT 412
Query 445 TGAAGAAGATGGTACTACTTATCGCAAGGGATGCAAGCCTTTACCTGGTGAGATAGCTGG 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 413 TGAAGAAGATGGTACTACTTATCGCAAGGGATGCAAGCCTTTACCTGGTGAGATGGCTGG 472
Query 505 GACTTCATCTCGAGTAACTCCATATTCATCACAGAACCAGAGCCCTCTTTCATCAGCCTT 564
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 473 GACTTCATCTCGAGTTACTCCATACTCATCACAGAACCAGAGCCCTCTTTCATCGGCCTT 532
Query 565 TCAAAGTCCCATCCCATCTTACCAAGTTAGCCCGTCTTCTTCATCATTCCCGAGTCCTTC 624
|||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 533 TCAAAGCCCCATCCCGTCTTACCAAGTTAGCCCGTCTTCTTCGTCTTTCCCGAGTCCTTC 592
Query 625 TCGCGGTGAACCAAATAACAACATGTCCTCTACATTCTTCCCTTTCCTCAGAAATGGTGG 684
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 593 TCGCGGTGAACCAAATAACAACATCTCCTCTACATTCTTCCCCTTCCTCAGAAATGGTGG 652
Query 685 CATTCCTTCTTCTCTTCCTTCCCTCAGAATCTCAAACAGTTGTCCAGTTACCCCACCGGT 744
||||||||| |||||||||||||||||||||||||||||||| || || ||||| |||||
Sbjct 653 CATTCCTTCCTCTCTTCCTTCCCTCAGAATCTCAAACAGTTGCCCTGTCACCCCCCCGGT 712
Query 745 CTCATCGCCGACTTCTAAGAACCCGAAACCGTTGCCTAACTGGGAATCTATCGCTAAGCA 804
|||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 713 CTCATCACCGACTTCCAAGAACCCTAAACCGTTGCCCAACTGGGAATCTATCGCTAAGCA 772
Query 805 ATCCATGGCCATTGCTAAACAATCAATGGCGTCTTTTAATTATCCTTTCTATGCGGTTTC 864
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 773 ATCCATGGCCATTGCTAAACAATCCATGGCGTCTTTTAACTATCCTTTCTATGCGGTTTC 832
Query 865 TGCACCTGCTAGTCCGACACATCGCCACCAGTTTCATACCCCGGCTACTATACCTGAATG 924
||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 833 TGCACCTGCTAGTCCAACACATCGCCA--A-TTTCATACCCCGGCTACTATACCTGAATG 889
Query 925 TGATGAGTCTGACTCTTCCACTGTTGATTCTGGTCATTGGATAAGCTTTCAGAAGTTTGC 984
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TGATGAGTCTGACTCTTCAACTGTTGATTCTGGTCATTGGATAAGCTTTCAGAAGTTTGC 949
Query 985 ACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCTCCTACCTTCAATCTTGTGAA 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 ACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCTCCTACCTTCAATCTTGTGAA 1009
Query 1045 ACCTGCGCCTCAGCAGATGTCTCCAAATACTGCTGCCTTCCAAGAGATTGGTCAAAGCTC 1104
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1010 ACCCGCGCCTCAGCAGATGTCTCCAAATACTGCTGCGTTCCAAGAGATTGGTCAAAGCTC 1069
Query 1105 TGAGTTTAAATTTGAGAATAGCCAAGTTAAACCCTGGGAAGGAGAGAGGATACATGATGT 1164
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1070 TGAATTTAAATTTGAGAATAGCCAAGTTAAGCCTTGGGAAGGAGAGAGGATACATGATGT 1129
Query 1165 GGGTATGGAGGATCTTGAGCTTACACTTGGAAATGGGAAGGCTCGTGGTTGACATAAACA 1224
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1130 GGGTATGGAGGATCTTGAGCTTACACTTGGAAACGGGAAGGCTCGTGGTTGACATAAACA 1189
Query 1225 ACT-AGGCAAACCCAAATGGCATGTC-ATTGGAATATGAGAAACTAATCCTCTTGAGTAT 1282
||| | |||| | |||||||||| || ||||| |||||||| ||||||| ||||| |
Sbjct 1190 ACTCAA-CAAAGTCGGATGGCATGTCGAT-GGAATTTGAGAAACCAATCCTCCTGAGT-T 1246
Query 1283 T-TTCTTCTT 1291
| ||| ||||
Sbjct 1247 TCTTCATCTT 1256
> Ahg472158 jgi|Araly1|472158|fgenesh2_kg.1__2112__AT1G19350.4
Length=1402
Score = 968 bits (524), Expect = 0.0
Identities = 896/1071 (84%), Gaps = 43/1071 (4%)
Strand=Plus/Plus
Query 205 GATGACTTCGGATGGAGCTACGTCGACATCAGCAGCTGCAGCTGCGGCGGCGGCAGCAGC 264
|||||| || || ||||| |||||||| |||||||| |||||||| ||| ||| | |
Sbjct 153 GATGACGTCTGACGGAGCAACGTCGACGTCAGCAGCAGCAGCTGCAGCGATGGC-G-A-- 208
Query 265 GGCgaggaggaagccgtcgtggagagaaagggagaataatcggaggagaga-aagacgga 323
|||||||||| |||||||||||||| |||||||| |||||||| ||||| || |||
Sbjct 209 --CGAGGAGGAAACCGTCGTGGAGAGAGAGGGAGAACAATCGGAGAAGAGAGCGGA-GGA 265
Query 324 gaagagCTGTAGCTGCGAAGATATACACTGGGCTTAGAGCTCAAGGTGATTATAAT-TTG 382
|||||||||| || |||||||| || ||||| ||||||||||||||| | || ||| ||
Sbjct 266 GAAGAGCTGTTGCGGCGAAGATTTATACTGGTCTTAGAGCTCAAGGTAACTACAATCTT- 324
Query 383 CCTAAACATTGTGATAATAATGAAGTCCTTAAAGCTCTTTGTGT-TGAAGCTGGTTGGGT 441
|| ||||||||||| || ||||| || || || ||||||||| | |||||||||||||||
Sbjct 325 CCAAAACATTGTGACAACAATGAGGTTCTCAAGGCTCTTTGT-TCTGAAGCTGGTTGGGT 383
Query 442 TGTTGAAGAAGATGGTACTACTTATCGCAAGGGATGCAAGCCTTTACCTGGTGAGATAGC 501
|||||||||||| || |||||||||||||||||| ||||||| |||||||||| || ||
Sbjct 384 TGTTGAAGAAGACGGAACTACTTATCGCAAGGGACACAAGCCTCTACCTGGTGACATGGC 443
Query 502 TGGGA-CTTCATCTCGAGTAACTCCATATTCATCACAGAACCAGAGCCCTCTTTCAT-CA 559
| ||| | || ||||||| |||||| || || || || ||||| || ||||| || | ||
Sbjct 444 T-GGATCATCTTCTCGAGCAACTCCTTACTCTTCCCATAACCAAAGTCCTCTGTCTTCCA 502
Query 560 GCCTTTCAAAGTCCCATCCCATCTTACCAAGTTAG-CCCGTCTTCTTCATCATTCCCGAG 618
| ||| | || ||||||| |||||||||||| || ||| || ||||| || ||||||||
Sbjct 503 -CTTTTGATAGCCCCATCCTATCTTACCAAGTCAGTCCC-TCGTCTTCTTCGTTCCCGAG 560
Query 619 TCCTTCTCGCGGTGAACCAAATA-ACAACATGTCCTCTACATTCTTCCCTTTCCTCAGAA 677
||||||||| | || | | | |||||| | ||| ||| |||||||||||||||| |
Sbjct 561 TCCTTCTCGTGTTG-GCGATCCACACAACA--T-CTCCACAATCTTCCCTTTCCTCAGGA 616
Query 678 ATGGTGGCATTCCTTCTTCTCTTCCTTCC-CTCAGAATCTCAAACAGTTG-TCCAGTTAC 735
|||| || |||||||| || ||||| ||| || |||||||||||||| || |||||| ||
Sbjct 617 ATGGCGGGATTCCTTCATCGCTTCC-TCCGCTTAGAATCTCAAACAG-TGCTCCAGTCAC 674
Query 736 CCCACCGGTCTCATCGCCGACTTCTAAG-AACCCGAAACCGTTGCCTAAC-TGGGAATCT 793
|| || |||||||| || | |||| || ||||| ||||| |||||| || |||||||||
Sbjct 675 TCCTCCAGTCTCATCTCCAAATTCT-AGAAACCCCAAACCATTGCCT-ACTTGGGAATCT 732
Query 794 ATCGCTAAGCAATCCATGGCCAT---TGCTAAACAATCAATGGCGTCTTTTAATTATCC- 849
| | || ||||||||| |||| |||||||||||||||| | ||||| || |||||
Sbjct 733 TTTACCAAACAATCCATGTCCATGGCTGCTAAACAATCAATGACTTCTTTGAACTATCCG 792
Query 850 TTTCTATGCGGTTTCTGCACCTGCTAGTCCGACACATCGCCACCAGTTTCATACCCCGGC 909
||| |||||||||||||||||||||||||| || |||| | |||||| ||| |||||||
Sbjct 793 TTT-TATGCGGTTTCTGCACCTGCTAGTCCCACCCATCATCGCCAGTTCCATGCCCCGGC 851
Query 910 TACTATACCTGAATGTGATGAGTCTGACTCTTCCACTGTTGATTCTGGTCATTGGATAAG 969
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 852 TACTATACCTGAATGTGATGAGTCTGACTCTTCAACTGTTGATTCTGGTCATTGGATAAG 911
Query 970 CTTTCAGAAGTTTGCACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCTCCTAC 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 CTTTCAGAAGTTTGCACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCTCCTAC 971
Query 1030 CTTCAATCTTGTGAAACCTGCGCCTCAGCAGATG-TCTCCAAATACTGCTGCCTTCCAAG 1088
|||||||| ||||||||||| |||||||| || |||||||| ||||| || |||||
Sbjct 972 TTTCAATCTCGTGAAACCTGCACCTCAGCA-ATTATCTCCAAACACTGCAGCGACCCAAG 1030
Query 1089 AGATTGGTCAAAGCTCTGAGTTTAAATTTGAGAATAGCCAAGTTAAACCCTGGGAAGGAG 1148
|||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |
Sbjct 1031 AGATTGGTCAAAGCTCCGAGTTTAAGTTTGAGAACAGCCAAGTTAAACCATGGGAAGGGG 1090
Query 1149 AGAGGATACATGATGTGGGTATGGAGGATCTTGAGCTTACACTTGGAAATGGGAAG-GCT 1207
||||||| |||||||||| |||||||||||| ||||| || ||||||||||| || |||
Sbjct 1091 AGAGGATTCATGATGTGGCTATGGAGGATCTAGAGCTCACGCTTGGAAATGGTAAAAGCT 1150
Query 1208 CGTGGTTGACATAAACAACT-AGGCAAACCCAA-ATGGCATGTCATTGGAA 1256
| | ||||| || || ||| ||| || ||| ||| |||||| | ||||
Sbjct 1151 CATAGTTGAGATGAAGTACTCAGG-AA-CCCGTTATGTCATGTCGTCGGAA 1199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58544706565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5