BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75100.1
Length=2279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476649 jgi|Araly1|476649|fgenesh2_kg.2__1779__AT1G75100.1 3020 0.0
> Ahg476649 jgi|Araly1|476649|fgenesh2_kg.2__1779__AT1G75100.1
Length=2103
Score = 3020 bits (1635), Expect = 0.0
Identities = 1971/2124 (93%), Gaps = 60/2124 (3%)
Strand=Plus/Plus
Query 26 TGTGCTATGCAGACATTACCAAGCTCAGAAACCGTTCTTTTAGGCTCCAACTCAGCACCA 85
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1 TGTGCTATGCAGACATTACCAAGCTCAGAAACCGTTCTTTTGGGCTCGAACTCAGCACCA 60
Query 86 CCTGTGTTGCGTAGTCCCGGTGGCGATGACGTGGACATCGATTTTGGTGACGTGTTTGGT 145
|||||| | |||| |||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 61 CCTGTGCTACGTAATCCCGGCGGTGATGACGTGGACATCGATTTCGGTGACGTGTTTGGT 120
Query 146 GGTCCTCCTAAGAGACGCTCTAAAGTTAC---TAGTAACGAAGTCAC-ACGACATAGCTT 201
||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||||
Sbjct 121 GGTCCTCCTAAGAGACGCTCTAAAGTTACTAATAGTAACCAAGTCACGA-GACATAGCTT 179
Query 202 CAGTGAATCCGCTCTCCGGCGTCGTGACGTCATCGTCGACGTCGGCGATCTGCTTCCGCA 261
|||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 180 CAGTGAATCCGCTCTCAGGCGTCGTGACGTCATCGTCGACGTCGGCTCTCTGATTCCGCA 239
Query 262 AGACGAGAAGCCTGTATTCGGCGAAGATACATCATCTGTCCGGCGTCGTTTCACCACTGA 321
||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 240 AGACGAGAAGCCTGTTTTCGGCGAAGAGACATC--C-GTCCGGCGTCGTTTCACCACTGA 296
Query 322 TGATTTCTTCGACGATATTTTCAGAGTTAATG-A--A---TCATCATCACTTCCGGGTTC 375
|||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 297 TGATTTCTTCGACGATATTTTCAGAGTTAATGAATCATCTTCATCATCACTTCCGGGTTC 356
Query 376 TCGGATCCTTAGCCCGGCTCACAAACCCGAATCTTCTTCAGGGACTTCGTCTCCATCCCA 435
||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 357 TCGGATCCTAAGCCCGGCTCACAAACCCGAA---TCTTCAGGGACTTCGTCTCCAGCACA 413
Query 436 ATTCAGTCTTCCTGCAAAAGCAACAGAGATTCCAACATTTAATTTAGCAGCTACTCGTAG 495
||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 414 ATTCAGTCTTCCTGCAAAAGCAACAGAGATTCCTACATTTGGTTT---AGCTACTCGTAG 470
Query 496 TTTGAACAAGAACAAAGAAACTGTTTCGAGCTCTCCTTTGTCAAGAACTTCAAGCAAAGC 555
||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 471 TTTGAGCAAGAACAAAGAAACAGTCTCGAGCTCTCCTTTGTCAAGAACTTCAAGCAAAGC 530
Query 556 AGATGTGGTCTCTACTGCTAAATCATATTCAGATGATTGTGATGATCCTCCACAAGTTTT 615
||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 531 CGATATGGTCTCTACTGCTAAATCATATTCAGATGATTGTGATGATCCTGCACGAGTTGT 590
Query 616 TGTTACTGGGAAAGGAAGGCAATTTCATTTCTCTATCTACAAGTGGCCTAATAAAGGAGT 675
||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 591 TGTTACTGGCAAAGGCAGGCAGTTTCATTTCTCTATTTACAAGTGGCCTAATAAAGGTGT 650
Query 676 TCCTGTTGTTATTTGGGGAAGCTCTAGATTGAGTTCTATGTCTAAAGCTGAGGAGACAAC 735
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 651 TCCTGTTGTTATTTGGGGAAGCTCTAGATTGAGTTCTATGTCTAAAGCTGAGGGGACAAC 710
Query 736 ACCTGT-ACCATTGAGTGATTATCGAAAAACTTCAGTTGTTGAGAAATTGGGTAAAAATG 794
|| || | ||||||||||| ||||||||||| || ||||||||| |||| ||||||
Sbjct 711 GCCGGTGA-CATTGAGTGATCATCGAAAAACTCCA---GTTGAGAAAGCGGGTGAAAATG 766
Query 795 AAGAAGGAGATGGAAAAAGTGGTTTATCTGGTTTGAAAGATGTGAAGAAGACCTCGCTAA 854
||||| | || | ||| | |||||||||||| | |||||||||||| ||||
Sbjct 767 AAGAA-G-GA--G--AAA---G------TGGTTTGAAAGAGGAGAAGAAGACCTCACTAA 811
Query 855 AGCGTCCTGGTGTCCAGACAAAAGAAGAGAAAACAGAAA-CAGATTTGAAGTCTGAACAA 913
||||||||||||| ||||||||||||||||||||||||| | |||| | ||||||| ||
Sbjct 812 AGCGTCCTGGTGTTCAGACAAAAGAAGAGAAAACAGAAATC-GATTCGGTGTCTGAAAAA 870
Query 914 GCCTTCTTTGGTGTCTCAAAAGCACGTGAGGCTAATGTGAAGCCTCTTGATTC-A--G-- 968
|||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |
Sbjct 871 GCCTTCTTTGGTGTGTCAAAAGCACGTGAGGCTAATGTGAAGCCTCTTTATTCAATTGAT 930
Query 969 TTG-AGTCTGAACAGGCCTTCTCTGGTGTGTCAAAAGCACATGAAGCTACTACTGTGAAG 1027
||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 931 TTGAAGTCTAAACAGGCCTTCTCTGGTGTGTCAAAAGCTCATGAAGCTACTACTGTGAAG 990
Query 1028 CCTCTTCATTCAATTTTTCAtgaagaa-gatgagagacaagatgagaaaatagtatcaga 1086
|||||||||||||||| |||||| || ||||||||||||| ||||||||||||||||||
Sbjct 991 TCTCTTCATTCAATTTTGCATGAA-AACGATGAGAGACAAGGTGAGAAAATAGTATCAGA 1049
Query 1087 gagagaagtgagaaaaggtaaaagCAAAGCGAAGAACACTCGAAGTTTTACCGAAGATTC 1146
||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 1050 GAGAGAAGTGAGAAAAGGTAAAAGCAAAGCGAAGAACACGCAAAGTTTTACTGAAGATTC 1109
Query 1147 AAGAACCAAGAAGAAATCACAAGGCACTAAAAGTTCTTTGGATAGTAGCCCGATACCCGA 1206
|||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1110 AAGAACAAAAAAGAAACCACAAGGCATTAAAAGTTCTTTGGATAGTAGCCCGATACCCGA 1169
Query 1207 TAAATCCAGCTTCGCAAGTTCATCAGCAGCACCAGAAGTTGGCAAAGATGGAGTCAAAGG 1266
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1170 TAAATCCAGCTTCGCAAGTTCATCCGCAGCACCAGAAGTTGGCAAAGATGGAGTCAAAGG 1229
Query 1267 AAAAGTGAGTGACTTCGTTAAGATTTTCAGTAAAGGAGCTTCAGTTGGAGCAGGTGGGGA 1326
|||||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1230 AAAAGTCAGTGACTTTGTTAAGATTTTCAGTAAAGGAGCCTCAGGTGGAGCAGGTGGGGA 1289
Query 1327 ATCTCTTGGACAAAGCTCTAGATGGAGAGCTAAAGAAACTCCCAAGACTGATATCATTCA 1386
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1290 ATCTCTTGGACAAAGCTCTAGATGGAGAGCTAAGGAAACTCCCAAGACTGATATCAATCA 1349
Query 1387 TGATGGTTCTAATGCCAAGGAAACTGTAAACATTCCTGATCAACAAAAGAAATCGACTCC 1446
||||| | ||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1350 TGATGCTGCTAATGCCAAGGAAAATGTAAACATTCCTGATCAGCAAAAGAAATCGACTCC 1409
Query 1447 AGATATCCCCGCTATGAATCGGGA-TCAGAAACCTTCACAGT-CAACTCAGAAAAAAGAT 1504
|||||||||||||||||||||||| || |||||||||||| | ||||||||||||| |||
Sbjct 1410 AGATATCCCCGCTATGAATCGGGATTC-GAAACCTTCACA-TGCAACTCAGAAAAAGGAT 1467
Query 1505 TCAGACCGGGAGAGCATGAACTATAAGGCTCCTGGTGATACTGTACAAGAAGAGAGACAA 1564
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1468 TCAGACCGGGAGAGCATGAACTATAAGGCTACTGGTGTTACTGTACAAGAAGAGAGACAA 1527
Query 1565 GAACCTAGCACAACACATACTACCTCAGAGGATATAGATGAGCCCTTCCATGTAAATTTC 1624
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 GAACCGAGCACAACACATACTACCTCAGAGGATATAGATGAGCCCTTCCATGTAAATTTC 1587
Query 1625 GATGTGGAGGATATAACACAAGATGAAAACAA-AA--TGGAAGAGGCCAATAAGGATGCT 1681
|||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||
Sbjct 1588 GATGTGGAGGATATAACACAAGATGAAAACAACAAAATGGAAGAAACCAATAAGGATGCT 1647
Query 1682 GAAGAAATCAAGAACATCGATGCTAAAATCCGCAAGTGGTCAAGCGGAAAGAGTGGAAAC 1741
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1648 GAAGAAATCAAGAACATCGATGCTAAAATCCGCAAGTGGTCAAGTGGAAAGAGCGGAAAC 1707
Query 1742 ATTCGGTCTCTTCTATCCACGCTGCAATATATTCTTTGGTCTGGGAGCGGGTGGAAGCCG 1801
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1708 ATTCGGTCTCTTCTATCTACGCTGCAATATATTCTTTGGTCCGGGAGCGGGTGGAAGCCA 1767
Query 1802 GTTCCTCTAATGGATATGATCGAAGGAAACGCGGTTCGAAAATCGTACCAGAGGGCATTA 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 GTTCCTCTAATGGATATGATCGAAGGAAACGCGGTTCGAAAATCGTACCAGAGGGCATTA 1827
Query 1862 CTAATACTTCATCCAGACAAACTACAACAAAAGGGTGCTTCTGCAAACCAGAAATACATG 1921
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1828 CTAATCCTTCATCCAGATAAACTACAACAAAAGGGTGCATCTGCAAACCAGAAATACATG 1887
Query 1922 GCCGAGAAAGTTTTCGAATTATTACAGGAAGCATGGGACCACTTCAACACTCTCGGACCG 1981
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1888 GCTGAGAAAGTTTTCGAATTATTACAGGAAGCATGGGACCACTTCAACACTCTCGGACCG 1947
Query 1982 GTTTAAAGGAAGAAAACGAGTCTTTAGTCTTTTAGTTCTTTACACAAAGGCTATGTACAG 2041
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1948 GTTTAAAGGAAGACAACGAGTCTTTAGTCTTTTAGTTCTT-ACACAAAGGCTATGTACAG 2006
Query 2042 A--TACGGTTCTGAATCAAAAGATGTTGCAGAATTTTAGTTGTCACAGGTATACTTACAT 2099
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2007 AGATACGGTTCTGAATCAAAAGATGTTGCAGAATTTTAGTTGTCACAGGTTTACTTACAT 2066
Query 2100 CAAATTTTTGTTGGTTTGTTGAGA 2123
||| ||||||||||||||||||||
Sbjct 2067 CAATTTTTTGTTGGTTTGTTGAGA 2090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85817321985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5