BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75110.1
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476650 jgi|Araly1|476650|fgenesh2_kg.2__1780__AT1G75110.1 1840 0.0
Ahg476651 jgi|Araly1|476651|fgenesh2_kg.2__1781__AT1G75120.1 1013 0.0
Ahg472163 jgi|Araly1|472163|fgenesh2_kg.1__2117__AT1G19360.1 1003 0.0
> Ahg476650 jgi|Araly1|476650|fgenesh2_kg.2__1780__AT1G75110.1
Length=1346
Score = 1840 bits (996), Expect = 0.0
Identities = 1237/1353 (91%), Gaps = 17/1353 (1%)
Strand=Plus/Plus
Query 25 TTTGGCTTCTGCGTCATTTCGGCAATGGCGGGTCGCAGAGACAGGATCCAAC-AGCTCCG 83
||| ||||||||||| ||||||||||||||||||| | ||||| |||| || || | ||
Sbjct 1 TTTAGCTTCTGCGTCTTTTCGGCAATGGCGGGTCGTAAAGACAAAATCC-ACAAGTTGCG 59
Query 84 TGGATCTCGAATTGCGATTGCCATCTTTGTCGGAATTCTTATCGGCTGTGTCTGTTCCGT 143
|||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 60 TGGATCTCGAATTGCGGTTGCCATCTTGGTCGGAATTCTTATCGGGTGTGTCTGTTCCGT 119
Query 144 CTTGTTCCCGAACGGCTTCTTTAACTCGGGATCATC--C-TTGATTGCTAACGAAGAACG 200
||||||||||||||||||||| ||||||| |||||| | |||||| ||||||||||||
Sbjct 120 CTTGTTCCCGAACGGCTTCTTGAACTCGGAATCATCATCGCTGATTGTTAACGAAGAACG 179
Query 201 CATTTCGAAATCAACCTCTACGGATGGATTGGCTTCATGTGAATCATCTGAACGAGTCAA 260
| |||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||||
Sbjct 180 CCTTTCGAAATCAACCTCTAAGGATGGACTGGCTTCATGTGAATCGTCTGAACGGGTCAA 239
Query 261 AATGCTCAAATCAGACTTTTCAATTATCTCGGTAA-AGAACGCAGAGTTAAGGAAGCAGG 319
||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||
Sbjct 240 AATGCTCAAATCAGACTTTGCAATTATCTCCG-AAGAGAACGCAGAGTTAAGGAAGCAGG 298
Query 320 TAAGAGAACTAACGGAGAAGGTACGGTTGGCGGAAC-AGGAAACAGAGAATGCAAGGAAA 378
| || || |||||||| ||||||||||||||||||| ||| ||| || ||||| ||||||
Sbjct 299 TCAGGGAGCTAACGGAAAAGGTACGGTTGGCGGAACAAGG-AACGGATAATGCTAGGAAA 357
Query 379 CAAGTCTTAGTTTTGGGATCAGAGATAAAGGCAGGGCCTTTTGGTACTGTCAAGAGTCTG 438
|||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 358 CAAGTCTTAGTTTTGGGATCAGAGATTAAGGCAGGATCTTTTGGCACTGTCAAGAGTCTG 417
Query 439 AGAACTAATCCAACTGTTGTTCCTGATGAGTCTGTTAACCCGAGATTAGCTAAGCTTTTA 498
||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||
Sbjct 418 AGAACTAATCCAACTGTGGTTCCCGACGAGTCTGTTAACCCCAGATTAGCTAAGCTTTTA 477
Query 499 GAGAAAGTAGCTGTCAATAAAGAGATCATTGTGGTTCTTGCAAATTCAAATGTGAAACCA 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GAGAAAGTAGCTGTCAATAAAGAGATCATTGTGGTTCTTGCAAATTCAAATGTGAAACCA 537
Query 559 ATGTTGGAGTTGCAGATTGCTAGTGTAAAGAGAGTTGGTATTCAAAACTACCTCATTGTC 618
||| ||||||||||||||||||| | ||||| |||||||||| ||||||||| ||| ||
Sbjct 538 ATGCTGGAGTTGCAGATTGCTAGCATCAAGAGGGTTGGTATTCTAAACTACCTAATTATC 597
Query 619 GCGTTGGATGATTCCATGGAAAGTTTCTGCGAATCGAAGGAGGTTGTGTT-TTACAAGCG 677
|| |||||||||||| | || |||||||| ||||||||||||||| | | ||||||| |
Sbjct 598 GCCTTGGATGATTCCGTAGAGAGTTTCTGTGAATCGAAGGAGGTT-TCATATTACAAGAG 656
Query 678 AGATCCAGATAAAGCAGTGGACATGGTTGGAAAAAGCGGAGGTAATCACGCTGTTTCCGG 737
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 657 AGATCCAGATAAAGCAGTTGACATGGTTGGGAAAAGCGGAGGTAATCACGCTGTTTCCGG 716
Query 738 ACTGAAGTTCCGCGTCTTAAGAGAGTTCTTGCAGCTTGGTTACAGTGTTCTTCTATCGGA 797
|||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 717 ACTGAAATTCCGTGTGTTAAGAGAGTTCTTGCAGCTTGGCTACAGTGTTCTTCTATCGGA 776
Query 798 TGTGGACATTGTCTT-CTTGCAGAATCCTTTTAGTCATTTACACAGAGACTCTGATGTTG 856
|||||||||||| || || |||||| |||||| ||||| | |||||||||||||||| |
Sbjct 777 TGTGGACATTGTATTTCT-GCAGAACCCTTTTGGTCATCTGTACAGAGACTCTGATGTGG 835
Query 857 AGTCAATGAGTGATGGTCACGACAATAACACGGCTTATGGCTTCAACGATGTGTTTGATG 916
|||||||||| ||||| |||||||| | || || |||||||||||||||||||||||||
Sbjct 836 AGTCAATGAGCGATGGCCACGACAACATGACAGCGTATGGCTTCAACGATGTGTTTGATG 895
Query 917 AACCATCAATGGGATGGGCTAGGTATGCACACACAATGAGGATATGGGTTTTCAATTCAG 976
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 896 AACCATCCATGGGATGGGCTCGGTATGCACACACAATGAGGATATGGGTTTTCAATTCAG 955
Query 977 GGTTTTTCTATCTAAGACCAACTATTCCTTCAATAGACCTACTCGATCGTGTGGCAGATA 1036
||||||||||||||||||||||| |||||||||| || ||||| || || ||||| |||
Sbjct 956 GGTTTTTCTATCTAAGACCAACTCTTCCTTCAATCGAGCTACTGGACCGAGTGGCTTATA 1015
Query 1037 CACTCTCTAAGTCAGAGGCATGGGACCAAGCGGTTTTCAACGAGCAACTCTTTTACCCTT 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CACTCTCTAAGTCAGAGGCATGGGACCAAGCGGTTTTCAACGAGCAACTCTTTTACCCTT 1075
Query 1097 CGCATCCAGGGTACACTGGCTTACACGCTTCCAAGAGAGTCATGGATATGTACGAGTTCA 1156
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1076 CGCATCCCGGGTACACTGGCTTACACGCTTCCAAAAGAGTCATGGATATGTACGAGTTCA 1135
Query 1157 TGAACAGTAAGGTACTCTTCAAAACAGTGAGAAAGAATCAAGAACTGAAGAAGTTGAAGC 1216
|||| |||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 1136 TGAATAGTAAGGTTCTCTTCAAAACCGTGAGAAAGAATCATGAACTGAAGAAATTGAAGC 1195
Query 1217 CAGTGATTGTGCATCTCAATTACCATCCAGATAAACTCGAACGAATGCACGCTGTGGTAG 1276
| |||||||| ||||| |||||||||||||||||||||||||||||||| || || || |
Sbjct 1196 CGGTGATTGTTCATCTGAATTACCATCCAGATAAACTCGAACGAATGCAAGCAGTAGTGG 1255
Query 1277 AGTTCTACGTTAATGGCAAACAAGATGCG-TTGGATAGCTTTCCC-GATGGTTCAGATTG 1334
||||||| ||||||||||||||||| ||| ||| ||||||| ||| ||||||||||||||
Sbjct 1256 AGTTCTATGTTAATGGCAAACAAGACGCGCTTG-ATAGCTT-CCCAGATGGTTCAGATTG 1313
Query 1335 ATAAAAGAGATGGATGCTTGTTAAGCAAGATAT 1367
|||||||||||||||||||||||||||||||||
Sbjct 1314 ATAAAAGAGATGGATGCTTGTTAAGCAAGATAT 1346
> Ahg476651 jgi|Araly1|476651|fgenesh2_kg.2__1781__AT1G75120.1
Length=1373
Score = 1013 bits (548), Expect = 0.0
Identities = 860/1008 (85%), Gaps = 31/1008 (3%)
Strand=Plus/Plus
Query 398 CAGAGATAAAGGCAGGGCCTTTTGGTACTGTCAAGAGTCTG-AGAACTAATCCAACTGTT 456
||||||| ||||| ||||||||||| ||| ||| | ||||| | ||| |||||||||||
Sbjct 377 CAGAGATCAAGGCCGGGCCTTTTGGCACTCTCACGGGTCTGCA-AACCAATCCAACTGTG 435
Query 457 GTTCCTGATGAGTCTGTTAACCCGAGATTAGCTAAGCTTTTAGAGAAAGTAGCTGTCAAT 516
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 436 GTTCCCGACGAGTCTGTTAACCCCAGATTAGCTAAGCTTTTAGAGAAAGTAGCTGTCAAT 495
Query 517 AAAGAGATCATTGTGGTTCTTGCAAATT-CAAATGTGAAACCAATGTTGGAGTTGCAGAT 575
|||||||||||||| |||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct 496 AAAGAGATCATTGTAGTTCTTGCAAATAACAA-TGTGAAACCAATGTTGGAGGTGCAGAC 554
Query 576 TGCTAGTGTAAAGAGAGTTGGTATTCAAAACTACCTCATTGTCGCGTTGGATGATTCCAT 635
|||||| ||||||||||| ||||||||||||||| | || || | ||||||||||||||
Sbjct 555 TGCTAGCGTAAAGAGAGTGGGTATTCAAAACTACTTGGTTATCCCATTGGATGATTCCAT 614
Query 636 GGAAAGTTTCTGC-GAATCGAAGGAGGTTGTGT-TTTACAAGCGAGATCCAGATAAAGC- 692
||||| ||||| || ||||| || || | | ||| |||| ||||||||||||| ||
Sbjct 615 AGAAAGCTTCTGTAGA-TCGAATGAAGTCGCATATTT-CAAGAGAGATCCAGATAACGCG 672
Query 693 AGTGGACATGGTTGGAAAAAGCGGAGGTAAT-CACGCTGTTTCCGGACTGAAGTTCCGCG 751
| | || ||||||| ||||||||| || | || || || || ||||| || |||||||
Sbjct 673 A-TAGATGTGGTTGGGAAAAGCGGAAGTGGTTCA-GCCGTATCTGGACTAAAATTCCGCG 730
Query 752 TCTTAAGAGAGTTCTTGCAGCTTGGTTACAGTGTTCTTCTATCGGATGTGGACATTGTCT 811
| ||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||| |
Sbjct 731 TATTAAGGGAGTTCTTGCAGCTTGGTTATGGTGTTCTTCTAGCGGATGTGGACCTTGTAT 790
Query 812 TCTTGCAGAATCCTTTTAGTCATTTACACAGAGACTCTGATGTTGAGTCAATGAGTGATG 871
|||||||||| |||||| ||||| | |||||||||||||||| ||||| ||||| ||||
Sbjct 791 TCTTGCAGAACCCTTTTGGTCATCTGTACAGAGACTCTGATGTGGAGTCCATGAGCGATG 850
Query 872 GTCACGACAATAACACGGCTTATGGCTTCAACGATGTGTTTGATGAACCATCAATGGGAT 931
| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 851 GCCATGACAATAACACGGCTTATGGCTTCAACGATGTGTTTGATGACCCATCCATGACAC 910
Query 932 GGGCTAGGTA-TG-CACACACAATGAGGATATGGGTTTTCAATTCAGGGTTTTTCTATCT 989
|| || || | || | |||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 911 GGTCTCGG-ACTGTCT-ACACAACAAGGATATGGGTTTTTAATTCCGGGTTTTTCTATCT 968
Query 990 AAGACCAACTATTCCTTCAATAGACCTACTCGATCGTGTGGCAGATACACTCTCTAAGTC 1049
|||||||||| ||||||| || || ||||| ||||| ||| |||||||||||||||||||
Sbjct 969 AAGACCAACTCTTCCTTCTATCGAGCTACTAGATCGCGTGACAGATACACTCTCTAAGTC 1028
Query 1050 AGAGGCATGGGACCAAGCGGTTTTCAACGAGCAACTCTTTTACCCTTCGCATCCAGGGTA 1109
|| || |||||||||||| |||||||| ||||| |||||||||||||| ||||| || ||
Sbjct 1029 AGGGGGATGGGACCAAGCAGTTTTCAATGAGCACCTCTTTTACCCTTCACATCCCGGATA 1088
Query 1110 CACTGGCTTACACGCTTCCAAGAGAGTCATGGATATGTACGAGTTCATGAACAGTAAGGT 1169
|| ||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| |||
Sbjct 1089 CATTGGCTTACACGCTTCCAAGCGAGCCATGGATATATACGAGTTCATGAACAGTAGGGT 1148
Query 1170 ACTCTTCAAAACAGTGAGAAAGAATCAAGAACTGAAGAAGTTGAAGCCAGTGATTGTGCA 1229
||||||||||| |||||||||||| | |||||||||||||||||||| |||||||| ||
Sbjct 1149 CCTCTTCAAAACGGTGAGAAAGAATGAGGAACTGAAGAAGTTGAAGCCGGTGATTGTTCA 1208
Query 1230 TC-TCAATTACCATCCAGATAAACTCGAACGAATGCACGCTGTGGTAGAGTTCTACGTTA 1288
| | || |||||| |||||||||||||| ||||||| |||| || |||||||||||||
Sbjct 1209 -CATGAACTACCATTCAGATAAACTCGAAAGAATGCAAGCTGCAGTGGAGTTCTACGTTA 1267
Query 1289 ATGGCAAACAAGATGCG-TTGGATAGCTT-TCCCGATGGTTCAGATTGATAAAAGAGATG 1346
||||||| ||||||||| ||| ||||||| || ||||||||| | || || ||
Sbjct 1268 ATGGCAAGCAAGATGCGCTTG-ATAGCTTCTCT-GATGGTTCATA--GAGG---GATAT- 1319
Query 1347 GATGCTTGTTAAGCAAGATATCGAAA-AACCCAATCATCTTCTTCTTC 1393
||||||||||||||||||||||||| |||| || | |||| ||||||
Sbjct 1320 -ATGCTTGTTAAGCAAGATATCGAAAGAACCAAA-CTTCTTTTTCTTC 1365
> Ahg472163 jgi|Araly1|472163|fgenesh2_kg.1__2117__AT1G19360.1
Length=1739
Score = 1003 bits (543), Expect = 0.0
Identities = 1073/1323 (81%), Gaps = 60/1323 (5%)
Strand=Plus/Plus
Query 44 CGGCAATGGCGGGTCGCAGAGACAGGATCCAACAGCTCCGTGGATCTCGAATTGCGATTG 103
|||| ||||||||||| ||||| || | |||||||||||||||||||||||||||||| |
Sbjct 241 CGGCCATGGCGGGTCGTAGAGATAGAAGCCAACAGCTCCGTGGATCTCGAATTGCGATCG 300
Query 104 CCATCTTTGTCGGAATTC-TTATCGGCTGTGTCTGTTCCGTCT-TGTTCCCGA-ACGGCT 160
||||| | |||| | || ||||||| || || || |||| | ||||||| | ||||||
Sbjct 301 CCATCCTCATCGGTA-TCTTTATCGGTTGCGTGTGCGCCGT-TATGTTCCC-ATACGGCT 357
Query 161 TCTTTAACTCGGGATCATCCT-TGATTGCTAACGAAGAACG-CATTTCGAAATCAACCTC 218
|||| ||||| | |||| || ||| | ||| | ||||| | |||||||||||| |
Sbjct 358 TCTTCAACTCAAGCTCAT-CTCTGAAAG-TAA--ACGAACGTC-TTTCGAAATCAA-GT- 410
Query 219 TA-C-GGATGGATTGGCTTCATGTGAATCATCTGAACGAGTCAAAATGCTCAAATCAGAC 276
| | || ||||| | | |||||||| | |||||||| || ||||| |||||| ||
Sbjct 411 GACCAGGTTGGATCATCAGCTTGTGAATCGCCGGAACGAGTGAATATGCTAAAATCAAAC 470
Query 277 TTTTCAAT-TATCTCGGTA-AAGAACGCAGAGTTAAGGAAGCAGGTAAGAGAACTAACGG 334
||| | || | |||| | | ||||| |||||||||| |||||| || ||||| |||| |
Sbjct 471 TTTGC-ATCTCTCTCAG-AGAAGAATGCAGAGTTAAAGAAGCAAGTCAGAGAGTTAACAG 528
Query 335 AGAAGG-TACGGTTGGCGGAAC-AGGAAACAGAGAATGCAAGGAAACAAG-TCTTAGTTT 391
|| ||| ||||||| ||||| | ||| | |||| |||||||| ||||| | || ||| ||
Sbjct 529 AG-AGGCTACGGTTAGCGGAGCAAGG-ATCAGACAATGCAAGAAAACAGGTTC-TAGCTT 585
Query 392 TGGGATCAGAGATAAAGGCAGGG-CCTTTTGGTACTGTCAAGAGTCTGAGAACTAATCCA 450
||||| || |||| ||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 586 TGGGAACACAGATCAAGGC-GGGTCCTTTTGGAACTGTCAAGAGTCTGAGAACTAATCCA 644
Query 451 ACTGTTGTT-CCTGATGAGTCTGTTAACCCGAGATTAGCTAAGCTTTTAGA-GAAAGTAG 508
||| | || || ||||| ||| | ||||| ||||| | ||| || |||| || | | |
Sbjct 645 ACTATCCTTTCC-GATGAATCTATAAACCCTAGATTGGGAAAGATTCTAGAAGAGATT-G 702
Query 509 CTGTCAATAAAGAGATCATTGTGGTTCTTGCAAATTCAAATGTGAAACCAATGTTGGAG- 567
||||| |||||||| | || |||| |||||||||| ||||||||||| | |||||||||
Sbjct 703 CTGTCGATAAAGAGGTAATCGTGGCTCTTGCAAATGCAAATGTGAAAGCTATGTTGGAGG 762
Query 568 TTGCAGATTGCTAGTGTAAAGAGAGTTGGTATT-CAAAACTACCTCATTGTCGCGTTGGA 626
|| ||||||||||| | |||||||| ||||| |||| |||||| |||| || |||||
Sbjct 763 TT-CAGATTGCTAGCATTAAGAGAGTGGGTATAACAAA-CTACCTGGTTGTTGCATTGGA 820
Query 627 TGATTCCATGGA-AAGTTTCTGCGAATCGAAGGAGGTTGTGTTTTACAAGCGAGATCCAG 685
|||| ||| || || |||||| || ||| || |||| || ||||||| |||||||||
Sbjct 821 CGATTACATAGAGAA-TTTCTGTAAAGAGAAAGATGTTGCGTATTACAAGAGAGATCCAG 879
Query 686 ATAAAG-CAGTGGACA-TGGTTGGAAAAAGCGGAGGTAATCACGCTGTTTCCGGACTGAA 743
| || | | ||||||| || | || |||||||||||||| || || || || ||| ||||
Sbjct 880 ACAAGGAC-GTGGACACTG-TCGGGAAAAGCGGAGGTAACCATGCCGTCTCTGGATTGAA 937
Query 744 GTTCCGCGTCTTAAGAGAGTTCTTGCAGCTTGGTTACAGTGTTCTTCTATCGGATGTGGA 803
||||| || || |||||||||||||| || ||||| |||||||||| || ||||||||
Sbjct 938 ATTCCGTGTGTTGAGAGAGTTCTTGCAACTCGGTTATGGTGTTCTTCTCTCCGATGTGGA 997
Query 804 CATTGTCTTCTTGCAGAATCCTTTTAGTCATTTACACAGAGACTCTGATGTTGAGTCAAT 863
||||||||||||||||| || ||||||||| || |||||||||||||||| ||||||||
Sbjct 998 TATTGTCTTCTTGCAGAACCCATTTAGTCATCTATACAGAGACTCTGATGTGGAGTCAAT 1057
Query 864 GAGTGATGGTCACGACAATAACACGGCTTATGGCTTCAACGATGTGTTTGATGAACCATC 923
||||||||| || ||||| | ||||||||||| |||||||||||||||||||||||| |
Sbjct 1058 GAGTGATGGCCATAACAATCATACGGCTTATGGATTCAACGATGTGTTTGATGAACCAGC 1117
Query 924 AATGGGATGGGCTAGGTATGCACACACAATGAGGATATGGGTTTTCAATTCAGGGTTTTT 983
|||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 1118 CATGGGATGGGCTCGGTATGCTCACACTATGAGGATATGGGTTTTCAATTCGGGGTTTTT 1177
Query 984 CTATCTAAGACCAACTATTCCTTCAATAGACCTACTCGATCGTGTGGCAGATACACTCTC 1043
|||||||| || || ||||| ||||| || || || ||||| |||||||||| ||||||
Sbjct 1178 TTATCTAAGGCCTACAATTCCATCAATCGAGCTGCTTGATCGCGTGGCAGATAGACTCTC 1237
Query 1044 TAAGTC-AGAG-GCATGGGACCAAGCGGTTTTCAACGAGCAACTCTTTTACCCTTCGCAT 1101
|||| | | || | |||||||||||||||||||||||| |||| ||||| ||||| |||
Sbjct 1238 TAAGGCTAAAGTG--TGGGACCAAGCGGTTTTCAACGAGGAACTGTTTTATCCTTCACAT 1295
Query 1102 CC-AGGGTACACTG-GCTTACACGCTTCCAAGAGAGTCATGGATATGTACGAGTTCATGA 1159
|| | || |||| ||| ||| || ||||||||||||||||||||||| ||||| ||||
Sbjct 1296 CCTAAT-TATACTGCGCT-ACATGCATCCAAGAGAGTCATGGATATGTATGAGTTTATGA 1353
Query 1160 ACAGTAAGGTACTCTTCAAAACAGTGAGAAAGAATCAAGAACTGAAGAAGT---TGAAGC 1216
|||||||||| || ||||| || || ||||||||||| |||||||||||| |||| |
Sbjct 1354 ACAGTAAGGTCCTTTTCAAGACTGTAAGAAAGAATCATGAACTGAAGAAGAAAGTGAAAC 1413
Query 1217 CAGTGATTGTGCATCTCAATTACCATCCAGATAAACTCGA-ACGAATGCACGCTGTGGTA 1275
| |||||||| ||| | ||||||||||||||||| ||| | | ||||||| || || ||
Sbjct 1414 CGGTGATTGTTCATGTGAATTACCATCCAGATAAGCTCAATA-GAATGCAAGCCGTCGTT 1472
Query 1276 GAGTTCTACGTTAATGGCAAACAAGATGCG-TTGGATAGCTTTCCC-GATGGTTCAGATT 1333
|| ||||||||||| || || ||||| || ||| ||||||| ||| |||||||| || |
Sbjct 1473 GACTTCTACGTTAACGGTAAGCAAGACGCACTTG-ATAGCTT-CCCAGATGGTTCTGAAT 1530
Query 1334 GAT 1336
|||
Sbjct 1531 GAT 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58735157790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5