BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75120.1
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476651 jgi|Araly1|476651|fgenesh2_kg.2__1781__AT1G75120.1 1986 0.0
Ahg476650 jgi|Araly1|476650|fgenesh2_kg.2__1780__AT1G75110.1 1051 0.0
> Ahg476651 jgi|Araly1|476651|fgenesh2_kg.2__1781__AT1G75120.1
Length=1373
Score = 1986 bits (1075), Expect = 0.0
Identities = 1288/1389 (93%), Gaps = 22/1389 (2%)
Strand=Plus/Plus
Query 35 TTATATAAGATTAACTTGCACTACTAGGATTTGATCACAGAAGAAAGAAAGGGGTTTATT 94
|||||||||||||||||||||| ||| |||||||||| ||| |||||||||||||||||
Sbjct 1 TTATATAAGATTAACTTGCACTTCTACGATTTGATCATAGAGGAAAGAAAGGGGTTTATC 60
Query 95 AATTTGGTTACTGTAT-CTTACTCTTTTTACTTTCGGATAACTTCAATTGGCAATGGCGG 153
||||||| ||||| || ||| || ||| ||||||||| || ||||||||||||||||||
Sbjct 61 AATTTGGCTACTGCATCCTT-TTC-TTTCACTTTCGGAGAAATTCAATTGGCAATGGCGG 118
Query 154 TTCGTAAAGAGAAAGTCCAACCATTCCGCGAATGTGGAATTGCGATCGCCGTCCTGGTTG 213
||||||||||||| | ||||||||| ||| ||||||||||||||||||| |||||||||
Sbjct 119 GTCGTAAAGAGAAAATGCAACCATTCAGCGGATGTGGAATTGCGATCGCCATCCTGGTTG 178
Query 214 GAATCTTTATCGGGTGCGTCTGCACTATTTTGATACCCAATGATTTCGTCAACTTCAGAT 273
||||| |||||||||||||||||||| | ||| |||| ||||||||| |||| | | |||
Sbjct 179 GAATCATTATCGGGTGCGTCTGCACTGTCTTGTTACCAAATGATTTCTTCAAGTCCGGAT 238
Query 274 CATCAAAGGTTGCATCGGCTTCATGTGAATCGCCTGAACGGGTCAAGATGTTCAAAGCAG 333
||| ||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 239 CATTGAAGGTTGCATCGGCTTC------AT-G--TGAACGGGTCAAGATGTTCAAAGCAG 289
Query 334 AATTCGCAATCATCTCCGAAAAGAATGGCGAGTTAAGGAAGCAGGTCAGTGACCTAACAG 393
|||| |||||||||||||||||||||| ||||||||| |||||||||||||| |||||||
Sbjct 290 AATTTGCAATCATCTCCGAAAAGAATGCCGAGTTAAGCAAGCAGGTCAGTGAGCTAACAG 349
Query 394 AAAAGGTACGGTTGGCGGAACAAAAAGA-AGTGATCAAGGCAGGGCCTTTTGGCACTGTC 452
|||||||||||||||||||||||||| | || ||||||||| ||||||||||||||| ||
Sbjct 350 AAAAGGTACGGTTGGCGGAACAAAAA-ACAGAGATCAAGGCCGGGCCTTTTGGCACTCTC 408
Query 453 ACGGGTCTGCAAACTAATCCAACTGTGGCTCCCGACGAGTCTGCTAACCCCAGATTAGCT 512
|||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 409 ACGGGTCTGCAAACCAATCCAACTGTGGTTCCCGACGAGTCTGTTAACCCCAGATTAGCT 468
Query 513 AAGCTTTTAGAGAAAGTAGCTGTCAATAAAGAGATCATTGTAGTTCTTGCAAATAACAAT 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AAGCTTTTAGAGAAAGTAGCTGTCAATAAAGAGATCATTGTAGTTCTTGCAAATAACAAT 528
Query 573 GTGAAACCAATGTTGGAGGTGCAGATTGCTAGCGTAAAGAGAGTGGGTATTCAAAACTAC 632
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 529 GTGAAACCAATGTTGGAGGTGCAGACTGCTAGCGTAAAGAGAGTGGGTATTCAAAACTAC 588
Query 633 TTGGTCGTCCCGTTGGATGATTCCTTAGAAAGCTTTTGTAAATCGAATGAAGTCGCATAT 692
||||| |||| |||||||||||| |||||||||| |||| |||||||||||||||||||
Sbjct 589 TTGGTTATCCCATTGGATGATTCCATAGAAAGCTTCTGTAGATCGAATGAAGTCGCATAT 648
Query 693 TACAAGAGAGATCCAGATAACGCGATAGATGTGGTTGGGAAAAGCAGAAG-GAGTTCTGA 751
| ||||||||||||||||||||||||||||||||||||||||||| |||| | |||| |
Sbjct 649 TTCAAGAGAGATCCAGATAACGCGATAGATGTGGTTGGGAAAAGCGGAAGTG-GTTCAGC 707
Query 752 TGTATCTGGACTGAAATTCCGCGTCTTAAGGGAGTTCTTGCAGCTTGGTTATGGTGTTCT 811
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 708 CGTATCTGGACTAAAATTCCGCGTATTAAGGGAGTTCTTGCAGCTTGGTTATGGTGTTCT 767
Query 812 TCTATCGGATGTGGACATTGTATTCTTGCAGAACCCTTTTGGTCATCTGTACAGAGACTC 871
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TCTAGCGGATGTGGACCTTGTATTCTTGCAGAACCCTTTTGGTCATCTGTACAGAGACTC 827
Query 872 TGATGTGGAGTCCATGAGCGATGGTCATGACAATAACACAGCTTATGGCTTCAACGATGT 931
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 828 TGATGTGGAGTCCATGAGCGATGGCCATGACAATAACACGGCTTATGGCTTCAACGATGT 887
Query 932 GTTTGATGACCCAACCATGACACGGTCTCGGACTGTCTACACAAACA-GGATATGGGTTT 990
||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 888 GTTTGATGACCCATCCATGACACGGTCTCGGACTGTCTACACAA-CAAGGATATGGGTTT 946
Query 991 TCAATTCAGGGTTTTTCTATCTAAGACCAACTCTTCCTTCAATCGAGCTACTAGATCGGG 1050
| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 947 TTAATTCCGGGTTTTTCTATCTAAGACCAACTCTTCCTTCTATCGAGCTACTAGATCGCG 1006
Query 1051 TGACAGATACACTCTCTAAGTCGGGGGGATGGGACCAAGCAGTTTTCAATCAGCACCTCT 1110
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1007 TGACAGATACACTCTCTAAGTCAGGGGGATGGGACCAAGCAGTTTTCAATGAGCACCTCT 1066
Query 1111 TTTACCCTTCGCATCCTGGATACACTGGCTTATACGCTTCCAAGAGAGTCATGGATGTGT 1170
|||||||||| ||||| ||||||| ||||||| ||||||||||| ||| ||||||| | |
Sbjct 1067 TTTACCCTTCACATCCCGGATACATTGGCTTACACGCTTCCAAGCGAGCCATGGATATAT 1126
Query 1171 ACGAGTTCATGAACAGTAGGGTCCTCTTCAAAACGGTGAGAAAGGATGAGGAAATGAAGA 1230
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1127 ACGAGTTCATGAACAGTAGGGTCCTCTTCAAAACGGTGAGAAAGAATGAGGAACTGAAGA 1186
Query 1231 AGCTGAAGCCGGTGATTATTCATATGAATTACCATTCAGATAAACTCGAAAGAATGCAAG 1290
|| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1187 AGTTGAAGCCGGTGATTGTTCACATGAACTACCATTCAGATAAACTCGAAAGAATGCAAG 1246
Query 1291 CTGCAGTGGAGTTCTACGTTAATGGCAAGCAAGATGCGCTTGATAGGTTC-CGTGATGGT 1349
|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 1247 CTGCAGTGGAGTTCTACGTTAATGGCAAGCAAGATGCGCTTGATAGCTTCTC-TGATGGT 1305
Query 1350 TCATAGAGG-AGTATATGCTTGTTAAGCAAGATATCGAAAGAACCAAACTTCTTCTTCTT 1408
||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1306 TCATAGAGGGA-TATATGCTTGTTAAGCAAGATATCGAAAGAACCAAACTTCTTTTTCTT 1364
Query 1409 CTGATGTTT 1417
|||||||||
Sbjct 1365 CTGATGTTT 1373
> Ahg476650 jgi|Araly1|476650|fgenesh2_kg.2__1780__AT1G75110.1
Length=1346
Score = 1051 bits (569), Expect = 0.0
Identities = 848/979 (87%), Gaps = 33/979 (3%)
Strand=Plus/Plus
Query 425 GATCAAGGCAGGGCCTTTTGGCACTGTCACGGGTCTGCA-AACTAATCCAACTGTGGCTC 483
||| |||||||| ||||||||||||||| | ||||| | ||||||||||||||||| ||
Sbjct 381 GATTAAGGCAGGATCTTTTGGCACTGTCAAGAGTCTG-AGAACTAATCCAACTGTGGTTC 439
Query 484 CCGACGAGTCTGCTAACCCCAGATTAGCTAAGCTTTTAGAGAAAGTAGCTGTCAATAAAG 543
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 CCGACGAGTCTGTTAACCCCAGATTAGCTAAGCTTTTAGAGAAAGTAGCTGTCAATAAAG 499
Query 544 AGATCATTGTAGTTCTTGCAAA-TAACAATGTGAAACCAATGTTGGAGGTGCAGATTGCT 602
|||||||||| ||||||||||| | | ||||||||||||||| ||||| |||||||||||
Sbjct 500 AGATCATTGTGGTTCTTGCAAATTCA-AATGTGAAACCAATGCTGGAGTTGCAGATTGCT 558
Query 603 AGCGTAAAGAGAGTGGGTATTCAAAACTACTTGGTCGTC-CCGTTGGATGATTCCTTAGA 661
||| | ||||| || ||||||| ||||||| | | || || |||||||||||| ||||
Sbjct 559 AGCATCAAGAGGGTTGGTATTCTAAACTACCTAATTATCGCC-TTGGATGATTCCGTAGA 617
Query 662 AAGCTTT-TGTAAATCGAATGAAGTCGCATATTACAAGAGAGATCCAGATAACGCGA-TA 719
|| ||| ||| ||||||| || || ||||||||||||||||||||||||| || | |
Sbjct 618 GAG-TTTCTGTGAATCGAAGGAGGTTTCATATTACAAGAGAGATCCAGATAAAGC-AGTT 675
Query 720 GATGTGGTTGGGAAAAGCAGAAGG-AGTTC-TGATGTATCTGGACTGAAATTCCGCGTCT 777
|| |||||||||||||| | ||| | || | ||| || |||||||||||||| || |
Sbjct 676 GACATGGTTGGGAAAAGC-GGAGGTA-ATCACGCTGTTTCCGGACTGAAATTCCGTGTGT 733
Query 778 TAAGGGAGTTCTTGCAGCTTGGTTATGGTGTTCTTCTATCGGATGTGGACATTGTA-TTC 836
|||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 734 TAAGAGAGTTCTTGCAGCTTGGCTACAGTGTTCTTCTATCGGATGTGGACATTGTATTTC 793
Query 837 TTGCAGAACCCTTTTGGTCATCTGTACAGAGACTCTGATGTGGAGTCCATGAGCGATGGT 896
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 794 -TGCAGAACCCTTTTGGTCATCTGTACAGAGACTCTGATGTGGAGTCAATGAGCGATGGC 852
Query 897 CATGACAATAACACAGCTTATGGCTTCAACGATGTGTTTGATGACCCAACCATGACACGG 956
|| ||||| | ||||| |||||||||||||||||||||||||| ||| ||||| | ||
Sbjct 853 CACGACAACATGACAGCGTATGGCTTCAACGATGTGTTTGATGAACCATCCATGGGATGG 912
Query 957 TCTCGG-ACTGTCTACACA-AA-CAGGATATGGGTTTTCAATTCAGGGTTTTTCTATCTA 1013
||||| | || | ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 913 GCTCGGTA-TG-C-ACACACAATGAGGATATGGGTTTTCAATTCAGGGTTTTTCTATCTA 969
Query 1014 AGACCAACTCTTCCTTCAATCGAGCTACTAGATCGGGTGACAGATACACTCTCTAAGTCG 1073
||||||||||||||||||||||||||||| || || ||| | ||||||||||||||||
Sbjct 970 AGACCAACTCTTCCTTCAATCGAGCTACTGGACCGAGTGGCTTATACACTCTCTAAGTCA 1029
Query 1074 GGGGGATGGGACCAAGCAGTTTTCAATC-AGCACCTCTTTTACCCTTCGCATCCTGGATA 1132
| || |||||||||||| |||||||| | |||| |||||||||||||||||||| || ||
Sbjct 1030 GAGGCATGGGACCAAGCGGTTTTCAA-CGAGCAACTCTTTTACCCTTCGCATCCCGGGTA 1088
Query 1133 CACTGGCTTATACGCTTCCAAGAGAGTCATGGATGTGTACGAGTTCATGAACAGTAGGGT 1192
|||||||||| |||||||||| |||||||||||| |||||||||||||||| |||| |||
Sbjct 1089 CACTGGCTTACACGCTTCCAAAAGAGTCATGGATATGTACGAGTTCATGAATAGTAAGGT 1148
Query 1193 CCTCTTCAAAACGGTGAGAAAGGATGAGGAAATGAAGAAGCTGAAGCCGGTGATTATTCA 1252
||||||||||| ||||||||| || | ||| ||||||| |||||||||||||| ||||
Sbjct 1149 TCTCTTCAAAACCGTGAGAAAGAATCATGAACTGAAGAAATTGAAGCCGGTGATTGTTCA 1208
Query 1253 TATGAATTACCATTCAGATAAACTCGAAAGAATGCAAGCTGCAGTGGAGTTCTACGTTAA 1312
| ||||||||||| |||||||||||||| |||||||||| | |||||||||||| |||||
Sbjct 1209 TCTGAATTACCATCCAGATAAACTCGAACGAATGCAAGCAGTAGTGGAGTTCTATGTTAA 1268
Query 1313 TGGCAAGCAAGATGCGCTTGATAGGTTCCGTGATGGTTCATA--GAG----GAGTAT--A 1364
|||||| ||||| ||||||||||| |||| ||||||||| | || ||| || |
Sbjct 1269 TGGCAAACAAGACGCGCTTGATAGCTTCCCAGATGGTTCAGATTGATAAAAGAG-ATGGA 1327
Query 1365 TGCTTGTTAAGCAAGATAT 1383
|||||||||||||||||||
Sbjct 1328 TGCTTGTTAAGCAAGATAT 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56906826030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5