BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75130.1
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476652 jgi|Araly1|476652|fgenesh2_kg.2__1782__AT1G75130.1 2342 0.0
> Ahg476652 jgi|Araly1|476652|fgenesh2_kg.2__1782__AT1G75130.1
Length=1532
Score = 2342 bits (1268), Expect = 0.0
Identities = 1449/1537 (94%), Gaps = 10/1537 (1%)
Strand=Plus/Plus
Query 30 ACGTCAAGATATGGCAGTGTTCTTCATCTTGGTCTTGGTCTTTTTCTTCCTTGTCTTCAG 89
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ACGTCAAAATATGGCAGTGTTCTTGATCTTGGTCTTGGTCTTTTTCTTCCTTGTCTTCAG 60
Query 90 ATTCATCTACAGTAATATATGGGTTCCGTGGAGAATCCAATCTCACTTCAAGAAGCAGAG 149
|||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||
Sbjct 61 ATTCATCTACAGTAATCTATGGGTTCCGTGGAGAACCCAATCTCACTTCAAGAACCAGAG 120
Query 150 CGTGACGGGTCCTAGTTACCGGATATTCAGTGGAAACTCCGGCGAGGTTAGCCGGCTAAC 209
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 121 CGTGACGGGTCCTAGTTACCGGATATTCAGTGGAAACTCCGGTGAGGTGAGCCGACTAAC 180
Query 210 GGCGGAGGCGAAGTCAAAGCCGATTCCTTCCGGGAGA-AATCCTCATGAGTTCGTCCACC 268
|||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 181 GGCGGAGGCGAAATCAAAGCCGATTCCTTCCGGGA-ACAATCCTCATGAGTTCGTCCACC 239
Query 269 GTGTGGCGCCTCACTACCACGAATGGTCACGTGTCTACGGGAAGACGTTCCTCTACTGGT 328
| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 240 GAGTGGCGCCTCACTACCACGCATGGTCACGTGTCTACGGGAAGACGTTCCTTTACTGGT 299
Query 329 TCGGGTCGAAACCTGTGGTGGCTACGTCGGATCC-AAGACTAATCCGGGAAGCTTTGACG 387
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 300 TCGGGTCGAAACCTGTGGTGGCCACGTCGGATCCGAA-ACTAATCCGGGAAGCTTTGACG 358
Query 388 ACGGGTGGGTCGTTTGACCGAATTGGGCATAACCCTTTGTCTAAGCTGCTTTATGCTCAA 447
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 359 ACGGGTGGGTCGTTTGACCGAATCGGGCATAACCCTTTGTCTAAGCTGCTTTATGCTCAG 418
Query 448 GGTCTTCCTGGTCTTAGAGGTGATCAATGGGCTTTCCATAGAAGAATCGCCAAACAAGCT 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGTCTTCCTGGTCTTAGAGGTGATCAATGGGCTTTCCATAGAAGAATCGCCAAACAAGCT 478
Query 508 TTTACAATGGAGAAACTCAAGAGGTGGGTGCCACAAATGGTAACAAGTACTATGATGTTG 567
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 479 TTTACAATGGAGAAACTCAAGCGGTGGGTGCCACAAATGGTGACAAGTACTATGATGTTG 538
Query 568 ATGGAGAAGTGGGAAGATATGAGAAACGGAGGAGAAGAGATTGAGTTAGAGGTACACAAA 627
| ||||| ||||| || ||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 539 CTTGAGAAATGGGAGGAGATGAGAAACGGAGAAGAAGAGATTGAGTTAGAGGTGCACAGA 598
Query 628 GAGATGCACAATTTGTCTGCAGAAATGTTATCAAGAACAGCTTTTGGGAACAGCGTGGAA 687
|||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 599 GAGATGCACAGTTTGTCTGCAGATATTTTATCAAGAACAGCTTTTGGGAACAGCGTGGAA 658
Query 688 GAAGGGAAAGGAATCTTTGAATTGCAGGAGCGTATGATGCGTCTTTTTTATCTGGTTCGA 747
||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 659 GAAGGGAAAGGAATCTTTGCTTTGCAGGAGCGCATGATGCGTCTTTTTTATCTCGTTCGA 718
Query 748 TGGAGCGTTTATATCCCAGGATTCAGATTCTTTCCTTCGAAGACGAATAGAGAGATATGG 807
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 719 TGGAGCGTTTATATCCCCGGATTCAGATTCTTTCCTTCGAAAACGAATAGAGAAATATGG 778
Query 808 AGAATTGAGAAGCAAATCCGTGTTTCTATCTTGAAACTGATCGAAAACAATAAAACAGCT 867
|| ||||||| |||||||||| ||||||| ||||||||||||||||||| |||||||||
Sbjct 779 AGGGTTGAGAAACAAATCCGTGGTTCTATCCTGAAACTGATCGAAAACAACAAAACAGCT 838
Query 868 GTTGAGAAATCAGGAACTCTGCTTCA-GGCTTTTATGTCTCCTTACACAAATCAGAATGG 926
|||||||||||||||||||||||||| || ||||||||||||||| || |||||||||||
Sbjct 839 GTTGAGAAATCAGGAACTCTGCTTCACGG-TTTTATGTCTCCTTATACGAATCAGAATGG 897
Query 927 TCAAGAAGAGAAGCTTGGGATAGAAGAAGTTACAGATGAATGCAAAACGTTCTACTTTGC 986
|||||||||||| |||||||| |||||||||| ||||||||||||||| |||||||||||
Sbjct 898 TCAAGAAGAGAAACTTGGGATTGAAGAAGTTATAGATGAATGCAAAACTTTCTACTTTGC 957
Query 987 AGCTAAGGAAACAACTGCTAACCTTATGACGTTTGTTTTAGTCCTCTTAGCTATGAACCA 1046
||||||||||||||||| ||||||||| || | || |||||||||||||||||| ||||
Sbjct 958 AGCTAAGGAAACAACTGGTAACCTTATAACATGGGTCTTAGTCCTCTTAGCTATGCACCA 1017
Query 1047 AGAATGGCAAAACATTGCTCGGGAAGAAGTCATATGCGTTC-TCGGACAAACCGGGCTTC 1105
|||||||||||| ||||||||||||||||||||| | | || |||||| ||| |||||||
Sbjct 1018 AGAATGGCAAAAGATTGCTCGGGAAGAAGTCATACG-GCTCCTCGGACCAACAGGGCTTC 1076
Query 1106 CTACTCTAGACATCTTACAAGACCTCAAGACTCTAAGTATGATAATCAATGAGACTCTCC 1165
| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1077 CCACTCTAGACATCTTACAAGACTTCAAGACTCTAAGTATGATAATCAACGAGACTCTCC 1136
Query 1166 GGCTCTACCCTCCAGCAATGACATTAAACCGTGACACTCTTAAAAGAGCTAAGCTAGGAG 1225
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1137 GGCTCTACCCTCCAGCAATGACATTAAACCGTGACACTCTTAAGAGAGCTAAGCTCGGAA 1196
Query 1226 ACCTTGACATCCCTGCAGGAACTCAACTCTATTTATCAGTAGTCGCGATGCACCACGATA 1285
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1197 ACCTTGACATCCCTGCAGGAACTCAACTCTATTTATCAGTGGTCGCAATGCACCACGATA 1256
Query 1286 AAGAAACATGGGGAGACGACGCAGAGGAGTTTAATCCGCGTAGGTTTGAAGATCCTAAGA 1345
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1257 AAGAAACATGGGGAAACGACGCAGAGGAGTTTAATCCGCGTAGGTTTGAAGATCCCAAGA 1316
Query 1346 AACAATCAGCTCTGCTTGTACCGTTTGGGTTAGGGCCTAGGACTTGTGTGGGACAGAATC 1405
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AACAATCAGCTCTGCTTGTGCCGTTTGGGTTAGGGCCTAGGACTTGTGTGGGACAGAATC 1376
Query 1406 TTGCTGTGAATGAGGCTAAAACTGTTCTGGCTACGATCTTGAAGTATTACAGTTTCAGGT 1465
|||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1377 TTGCTGTGAATGAGGCCAAAACAGTTCTGGCTACGATCTTGAAGCATTACAGTTTCAGGT 1436
Query 1466 TGTCTCCAAGTTATGCTCATGCTCCTGTTTTATTTGTGACGTTGCAGCCTCAAAATGGTG 1525
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1437 TGTCTCCAAGTTATGCTCATGCTCCTGTTTTGCTTGTGACCTTGCAGCCTCAAAATGGTG 1496
Query 1526 CTCATCTTCTCTTTACTAGGAT-ATCAAGTTAAAAAA 1561
||||||||||||||| |||||| | | ||||||||||
Sbjct 1497 CTCATCTTCTCTTTAGTAGGATTA-CGAGTTAAAAAA 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62239460330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5