BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75140.1
Length=2227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476653 jgi|Araly1|476653|fgenesh2_kg.2__1783__AT1G75140.1 3175 0.0
Ahg920881 jgi|Araly1|920881|scaffold_102162.1 891 0.0
> Ahg476653 jgi|Araly1|476653|fgenesh2_kg.2__1783__AT1G75140.1
Length=2201
Score = 3175 bits (1719), Expect = 0.0
Identities = 2072/2235 (93%), Gaps = 53/2235 (2%)
Strand=Plus/Plus
Query 12 GAAGAAGACCAGAGACTATAGAGTTTCGGACACAAAAAGATCTCAAATCAGACAACTTTA 71
||||||||||||||| || |||||||||||||||||| ||||||||| ||||||| ||||
Sbjct 1 GAAGAAGACCAGAGAGTAGAGAGTTTCGGACACAAAAGGATCTCAAAGCAGACAATTTTA 60
Query 72 TTTTATTACTCTTAGCTCAACGTTGTTTGACTTACAAAAGAAAATCTCAGATAGATTCTG 131
||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 61 TTTTATTTCTCTTACCTCAACGTTGTTTGACTTAGAAAAGAAAATCTCAGATAGA-T-T- 117
Query 132 ACCGGATAAATCGTCTTCCTTCCAGATCCGAATTTC-T-CCATCTCCTGTAGATCTGCAT 189
| | ||||| |||| |||||||| ||| | || ||| ||||||||| ||
Sbjct 118 --C-------T--TCTTCTTTCCGGATCCGAA-TTCTTGCC--CTCTTGTAGATCTACAC 163
Query 190 AAATGGCGGTTACTGATTGACTTCAGG-----AAAATAAAAGGGAGACCTTTCTGCTTCT 244
|||||||||||||| | ||| |||||| |||| |||| |||| |||||||| |
Sbjct 164 AAATGGCGGTTACTTACTGATTTCAGGAAAAAAAAAAAAAAAGGAG-CCTTTCTG---C- 218
Query 245 TTTCTTACCATCTTGAATGGCGGATTCTCAAAACGGCAAGTCCGCATTT-TTCTTCTTCT 303
||| | | || |||||||||| ||| ||||||||||||| | ||| ||||||||||
Sbjct 219 -TTC-T----T-TT-AATGGCGGATACTCGAAACGGCAAGTCC-CTTTTCTTCTTCTTCT 269
Query 304 TTGTCTCGCTTATTTTGCTTTTCCTTTCGCCGTCTTATTCGGATGTCACCGCTTCCGAGT 363
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 270 TTGTCTCGCTTATTTTGCTTTTCCTTTCGCCGTCTTTTTCGGATGTCACAGCTTCCGAGT 329
Query 364 CCGATCCGATTCCGTACGAGAACTCAGATGCTTCTCCTGGAGTAGTGACCAGCAGTGAAT 423
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 330 CCGATCCGATTCCGTACGAGAACTCAGATGCTTCTCCTGGAGTCGTGACCAGCAGTGAAT 389
Query 424 CCGACAGGCAAGGTGTTTCATTGCATAGACTTGAGGAACTCGTTAGGAATCTTACGGAAC 483
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 390 CCGACAGGCAAGGTGTTTCATTGCATAGACTAGAGGAACTTGTTAGGAATCTTACGGAAG 449
Query 484 TAGTTGCTAGATTAGACGCTAAGTTATCTGAAACTCCGTTTAAGGTAAAGAAAGAGATCA 543
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TAGTCGCTAGATTAGATGCTAAGTTATCTGAAACTCCGTTTAAGGTAAAGAAAGAGATCA 509
Query 544 CTCGTGATGAGATCGAAGAGAAAGCTAAGGCTTTTTCCGTTACAAAGTATAGTCCTTTCT 603
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 510 GTCGTGATGAGATCGAAGAGAAAGCTAAGGCTTTTTCCGTGACAAAGTACAGTCCTTTCT 569
Query 604 GGTCTGAGAGATTCGAATTCACATCAGCTGTGAAATTAGACTCTGAAGCGACTTGTATCA 663
|||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 570 GGTCTGAGAGATTCGATTTCACATCGGCTGTGAAACTAGACTCTGAAGCGACTTGTATCA 629
Query 664 ACGTGTTACCGTTTCGAGATCACGAAGGTTTAAGCAAGTATTTCGCAGTTGGAGATTCAA 723
|||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 630 GCGTGTTGCCGTTTCGAGATCACGAAGGTTTTAGCAAGTATTTCGCAGTTGGGGATTCAA 689
Query 724 GTGGTAGGGTTTTTGTCTTCTTGAGAAATGGCGATGTTTTGGTTGAGTTTTTCACCACCT 783
|||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 690 GTGGTAGGGTTTTTGTGTTCTTGAGAAATGGGGATGTTTTGGTTGAG---TTCACCACCT 746
Query 784 GCGATTCACCAATCACGGCAATGGTGTCTTACATGTCTGTGTATAAGAATGAGAGCTTTG 843
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 747 GCGATTCACCAATTACGGCAATGGTGTCTTACATGTCTGTGTATAAGAACGAGAGCTTCG 806
Query 844 TGGTGACGGGACACCAAAGCGGAGTCATCTTGTTGCATAGACTCCGAGAGGGCTCGATCG 903
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 807 TGGTGACGGGCCACCAAAGCGGAGTCATCTTGTTGCATAGACTCCGCGAGGGCTCGATCG 866
Query 904 GGGAAGATTTGAATTCCGCTGTGATGGAAAATGTTGGCAAGTTTGATGGCACGGAGGATG 963
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 867 GGGAAGGTTTGAATTCCGCTGTGATGGAAAATGTTGGCAAGTTTGATGGCACGGAGGACG 926
Query 964 GTTTGCAAGTGACTCTATTGGAAGTGCATCATGTGGGTCGGGTTAGGTATATATTGGCGA 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 GTTTGCAAGTGACTCTATTGGAAGTGCATCATGTGGGTCGGGTTAGGTATATATTGGCGA 986
Query 1024 CAGATCTTAGCGGAAAGCTTACGGTTTTCACTGAGAACAGAACGGTTTATGGCTCTGTTA 1083
| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 987 CGGATCTTAGCGGAAAGCTCACGGTTTTCACTGAGAAGAGAACGGTTTATGGCTCGGTTA 1046
Query 1084 GCCCAACGAGTAGACCGCTTGTGTTCTTGAAGCAGAGGCTTTTGTTTCTCACTGAGACTG 1143
|||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 1047 CCCCAACGAGTAGACCGCTCGTGTTCTTGAAGCAGAGGCTGTTGTTTCTCACCGAGACTG 1106
Query 1144 GTGCTGGTTCATTGGACTTAAGAAGCATGAAGATCAGGGAATCTGAGTGTGAAGGTCTTA 1203
|||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1107 GTGCTGGTTCGTTGGATTTAAGAAGCATGAAGATCAGAGAATCCGAGTGTGAAGGTCTTA 1166
Query 1204 ACCATTCTCTAGCAAGAAGTTATGTTTTTGATGCGTCCGAACGGGCTAAAGCTTATGGAT 1263
|||||||||||||||||||||| ||||||||||| || |||||| |||||||||| ||||
Sbjct 1167 ACCATTCTCTAGCAAGAAGTTACGTTTTTGATGCATCGGAACGGTCTAAAGCTTACGGAT 1226
Query 1264 TCACATCCGAAGGCGAAATCATTCACGTGTTGCTTCTCGGAGACATTATGAACTTCAAAT 1323
||||||| ||||| |||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 1227 TCACATCTGAAGGTGAAATCATTCACGTATTACTTCTCGGAGACATCATGAACTTCAAAT 1286
Query 1324 GTAGAGTGAGATCAAAGAAGAAGGTACAAATGGAGGAGCCTGTAGCGTTACAAGCCATCA 1383
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1287 GTAGAGTGAGATCAAAGAAGAAGGTTCAAATGGAGGAGCCTGTAGCGTTACAAGCCATCA 1346
Query 1384 AAGGCTATCTACTTATAGTCAACCAAGAGAAAGTCTTTGTATACAATGTATCGACTCAAC 1443
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1347 AAGGCTATCTTCTTATAGTCAACCAAGAGAAAGTCTTTGTGTACAACGTATCGACTCAAC 1406
Query 1444 ACTACGTCCGAACCACGGGTCCTCGGCTTCTTTTTCCGGCTGCATTAGAAGATATCAGGT 1503
||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1407 ACTACGTTCGAACCACGGGTCCTCGGCTTCTTTTCCCTGCTGCATTAGAAGATATCAGGT 1466
Query 1504 CAACGTTCTTGAGCCATCGAGAATCAACTAAAACCACAGATCACCAGAAGCTAGAAAAGG 1563
|||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 1467 CAACGTTCTTGAGCCATCGAGAATCATCAAAAACCACCGATCACCAGAAGCTAGAAAAGG 1526
Query 1564 TAACTCCTTTAATAGCAAGCGACCGCGAAAAGCTGCTTGTGATGGGTTTAGGAGACGGAT 1623
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 TAACTCCTCTGATAGCAAGCGACCGCGAAAAGCTGCTTGTGATGGGTTTAGGAGACGGAT 1586
Query 1624 ACGTAGCTACATACAAATCAAAGCTTCCAATCTCCAAAGCAGAATTCAACACAATGCTTT 1683
| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1587 ATGTCGCTACATACAAATCAAAGCTTCCGATCTCCAAAGCAGAGTTCAACACAATGCTTT 1646
Query 1684 GGAGCAGTCCTGTCTTCTTCTTCATACTTTTCTTATTCGGCGCTTGGCATTTTTTCTCTA 1743
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1647 GGAGCAGTCCTGTCTTCTTCTTCATACTTTTCTTATTCGGCGCTTGGCATTTTTTCGCTA 1706
Query 1744 AGAAGAAAGAATCTCTCACAGCTTGGGGACCTGACGATCCTTTCTCCTCCACGACAATGT 1803
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1707 AGAAGAAAGAATCTCTCACAGCTTGGGGACCTGATGATCCTTTCACCTCCACGACAATGT 1766
Query 1804 CTTCTTC-T--TCTACAACAACTGCACAAAATAGTTCCGCATTCTCTGAATCAACTAGGA 1860
||||||| | ||||| |||||||||||||| || ||||||||| ||||| ||| ||| |
Sbjct 1767 CTTCTTCTTCGTCTACTACAACTGCACAAAACAGATCCGCATTCGCTGAACCAATTAGAA 1826
Query 1861 GAAACGACGACCACATGGATCTTCGGAGAAGATACGTTTCGCCATCTCGGTATCCTCCTG 1920
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1827 GAAACGACGACCACATGGATCTTCGAAGAAGGTACGTTTCGCCATCTCGGTATCCTCCTG 1886
Query 1921 GAGCAGCAACAGGTGCTTACCGTTCAGTAGGGTCTAACGACCCGAGCTCAAGAGCTCCAG 1980
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1887 GAGCAGCAACAGGTGCATACCGATCAGTGGGGTCTAACGACCCGAGCTCAAGAGCTCCAG 1946
Query 1981 TGGAAACTACTAACTACAGAACAACCGCACAGGAGATGAAGTATCGTGGTGGGTCAGGTC 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1947 TGGAAACTACTAACTACAGAACAACCGCACAGGAGATGAAGTATCGTGGTGGGTCAGGTC 2006
Query 2041 TTGATTCTGGCGGATTTGGTAAAAGAAGAGAGAGTTTGTTTGGTAATAACAAAGCTTTAG 2100
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2007 TTGATTCAAGTGGATTTGGTAAAAGAAGAGAGAGTTTGTTTGGTAATAACAAAGCTTTAG 2066
Query 2101 ACGACGAAAGTTAGTTCCttttt-t-ttt------CATAGTTCGTTATGTTCtttttttA 2152
| ||||||||||||| ||||||| | ||| |||||||||||||||||||||||||
Sbjct 2067 ATGACGAAAGTTAGTCCCTTTTTATATTTATTTTTCATAGTTCGTTATGTTCTTTTTTTA 2126
Query 2153 CCGGTCAACGCTTGAAAATTTTCTAATGTGTAAAACTCCGGCGAAGAAATAAAATTTTTA 2212
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 2127 CCGGTCAACGCTTGAAATTTTTGTAATGTGTAAAACTCCGGCGAAGAAATAAAATTTTTA 2186
Query 2213 CCGGTTGCTTTGTTT 2227
||||| ||||| |||
Sbjct 2187 CCGGTAGCTTTATTT 2201
> Ahg920881 jgi|Araly1|920881|scaffold_102162.1
Length=1869
Score = 891 bits (482), Expect = 0.0
Identities = 1020/1269 (80%), Gaps = 79/1269 (6%)
Strand=Plus/Plus
Query 563 GAA-AGCTAAGGCTTTTTCCGTTAC-AAAGTATAGTCC-TTTCTGGTCTGAGA-GATTCG 618
||| ||||||||| ||||| || || ||| || ||||| ||| ||||| |||| | |||
Sbjct 342 GAAGAGCTAAGGCGTTTTCAGTGACTAAA-TACAGTCCGTTT-TGGTCGGAGAGGTTTC- 398
Query 619 AATTCACATCAGCTGTGAAA-TTAGACTCTGAAGCGACTTGTATCAACGTGTTACCGTTT 677
| || ||||||||||||||| | | | || || |||||||||||||| ||||| ||||||
Sbjct 399 AGTTTACATCAGCTGTGAAACTCA-ATTCCGATGCGACTTGTATCAATGTGTTGCCGTTT 457
Query 678 CGAGATCACGAAGGTTTAAGCAAGTA-TTTCGCAGTTGGAGA-TTCAAGTGGTAGGGTTT 735
|||| |||||||| |||||||| ||| ||| |||| || || || ||||| ||||
Sbjct 458 AAAGATTTCGAAGGTTCGAGCAAGTACTTT-GCAATTGGTGATTTTAA-AGGTAGAGTTT 515
Query 736 TTGTCTTCTTGAGAAATGGCGATGTTTTGGTTGAGTTTTTCACCACCTG-CGATTCACCA 794
||| |||||||||||||| ||||||||| ||||||||||||||| ||| ||||| ||
Sbjct 516 ATGTGTTCTTGAGAAATGGTGATGTTTTGATTGAGTTTTTCACCA-CTGTTGATTCTCCG 574
Query 795 ATCACGGCAATGGTGTCTTACATGTCTGTGTATAAGAA-TGAGAGCTTT-GTGGTGACGG 852
| || || ||||| || || | || |||| |||||| | ||| ||| ||||| ||||
Sbjct 575 GTTACTGCTATGGTTTCGTATTTATCGGTGTTTAAGAACT-CGAG-TTTCGTGGTTACGG 632
Query 853 GACACCA-AAGCGGAGTC-ATCTTGTTGCAT-AGACTCCGA-GAGGGCTCG-ATCGGGGA 907
| || || || || | | | ||||||||| || | | | ||||| ||| || || ||
Sbjct 633 GTCATCAGAA-TGGTG-CGGTTTTGTTGCATCGGA-TTC-ACGAGGGATCGAAT-GGCGA 687
Query 908 AGATT-----T-GAATTCCGCTGT-GATGGAAAATGTTGGCAAGTTTGATGGCACGGAGG 960
||||| | ||||| || | | ||||||| ||||||| ||||||||| | ||| |
Sbjct 688 AGATTGGAACTCGAATT-CGGTTTCGATGGAACATGTTGGGAAGTTTGAT-G--TGGATG 743
Query 961 A-T--GGT-TTGCAAGTGACTCTATTGGAAGTGCATCATGTGGGTCGGGTTAGGTATATA 1016
| | | | | | |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 744 ATTCAGCTGAT-CCTGTGACTTTGTTGGAAGTGCATCATGTGGGTCGGGTTAGGTATATA 802
Query 1017 TTGGCGACAGATCTTA-GCGGAAAGCTTACGGTTTTCACTGAGAACAGAACGGTTTATGG 1075
||| ||| ||| ||| | || ||||| |||||||| |||||||||||||||||||||||
Sbjct 803 TTGATGACGGAT-TTAAGTGGGAAGCTCACGGTTTTGACTGAGAACAGAACGGTTTATGG 861
Query 1076 CTCTGTTAGCCCAACGAGTAGACCGCTTGTGTTCTTGAAGCAGAGGCTT-TTGTTTCTCA 1134
|| |||| ||| ||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 862 GTCGGTTATTCCATCGAGTAGACCGCTTGTGTTCTTGAAGCAGAGA-TTGTTGTTTCTTA 920
Query 1135 CTGAGACTGGTGCTGGTTCATTGGACTTAAGAAGCATGAAGATCAGGGAATCTGAGTGTG 1194
||||| ||||||||||||| ||||||||||||||||||||||| || ||| |||||||||
Sbjct 921 CTGAGTCTGGTGCTGGTTCCTTGGACTTAAGAAGCATGAAGATAAGAGAAACTGAGTGTG 980
Query 1195 AAGGTCTTAACCATTCTCTAGCAAGAAGTTATGTTTTTGATGCGTCCG-AACGGGCTAAA 1253
|||| || ||||| || || || |||| ||||||||||||||| | || ||||| |||||
Sbjct 981 AAGGACTAAACCACTCGCTTGCGAGAACTTATGTTTTTGATGC-TGCGGAACGGTCTAAA 1039
Query 1254 GCTTATGGATTCACATCCGAAGGCGAAATCATTCACGTGTTGCTTCTCGGAGACATTATG 1313
|||||||||||||||||||| ||||| ||||||||||| ||||||| |||||| || |||
Sbjct 1040 GCTTATGGATTCACATCCGAGGGCGAGATCATTCACGTATTGCTTCACGGAGATATAATG 1099
Query 1314 AACTTCAAATGTAGAGTGAGATCAAAGAAGAAGGTACAAATGGAGGAGCCTGTAGCGTTA 1373
||||||||||||||||| ||||| ||||| ||| | |||||||||||||| ||||| |||
Sbjct 1100 AACTTCAAATGTAGAGTCAGATCCAAGAAAAAGTTCCAAATGGAGGAGCCAGTAGCTTTA 1159
Query 1374 CAAGCCATCAAAGGCTATCTACTTAT-AGTCAACCAAGAGAAAG-TCTTT-G-TATACAA 1429
||| | || ||||||||||| ||| | | |||| |||| |||| | ||| | | | |||
Sbjct 1160 CAATCAATTAAAGGCTATCTTCTTGTTA-TCAATGAAGA-AAAGGT-TTTCGCTTT-CAA 1215
Query 1430 TGTATCGACTCAACACTACGTCCGAACCACGGGTCCTCGGCTTCTTTTTC-CGGCTGCAT 1488
|||||||||||| || || || || || | |||||||||||| || ||| | || | |
Sbjct 1216 TGTATCGACTCAGCATTATGTTCGTACTGCTGGTCCTCGGCTT-TTGTTCTCTGCGGGTT 1274
Query 1489 TAGAAGATATCAGGTCAACGTTCTTGAGCCATCGAGAATCAACTAAAACCACAGATCACC 1548
||||||| ||||| || |||||||||| ||||| |||||| || | | ||| |||
Sbjct 1275 TAGAAGAGATCAGATCCGCGTTCTTGAGTCATCGTGAATCATCTT---C-A-AGA--ACC 1327
Query 1549 AGAAGCTAGAAAAGGTAACTCCTTTAATAGCAAGCGACCGCGAAAAGCTGCTTGTGATGG 1608
| || ||| |||| | ||||| ||||| |||||||| ||||| || |||||||| |
Sbjct 1328 -GCAG-TAGTAAAGACGAGGCCTTTGATAGCTAGCGACCGGGAAAACCTTCTTGTGATTG 1385
Query 1609 GTTTAGGAGACGGATACGTAGCTACATACAAATCAAAGCTTCCAA-TCTCCAAAGCAGAA 1667
|||||| | ||||||| | ||| |||||||| |||||||||| |||| |||| |||
Sbjct 1386 GTTTAGAAAACGGATATTTCGCTGTTTACAAATCGAAGCTTCCAACTCTC-AAAGGAGAC 1444
Query 1668 TTCAACACAATGCTTTGGAGCAGTCCTGTCTTCTTCTTCATACT-TTTCTTATTCGGCGC 1726
||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||| ||
Sbjct 1445 TTCAATACAATGCTTTGGAGCAGTCCTGTGTTCTTCTTCATACTATTTCT-ATTCGGGGC 1503
Query 1727 TTGGCATTT-TTT-CTCTAAGAAGAAAGAATCTCTCACAGCTTGGGGACCTGACGATCCT 1784
||||||||| ||| | | |||||||||||||| ||||| || |||||||| || ||||||
Sbjct 1504 TTGGCATTTCTTTGC-C-AAGAAGAAAGAATCGCTCACTGCATGGGGACCAGATGATCCT 1561
Query 1785 TTCTCCTCC 1793
|| | ||||
Sbjct 1562 TT-TACTCC 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83836629245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5