BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75150.1
Length=2738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476654 jgi|Araly1|476654|fgenesh2_kg.2__1784__AT1G75150.1 3422 0.0
> Ahg476654 jgi|Araly1|476654|fgenesh2_kg.2__1784__AT1G75150.1
Length=2671
Score = 3422 bits (1853), Expect = 0.0
Identities = 2453/2725 (90%), Gaps = 111/2725 (4%)
Strand=Plus/Plus
Query 49 ATTACAATCGAAGATGATGAACGATGATCAGCTTTCTCCTATTGGAGAATCGAGTGTCCC 108
|||||||||| ||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 23 ATTACAATCGGAGATGATGAACGACGAGCAGCTTTCTCCTATCGGAGAATCGAGTGTCCC 82
Query 109 AGTTCCTAACAGGATGCTAAGACGATTGAAGAAAGCTAAATTGATCTCCGATTCATGTCC 168
|||||| ||||||||||| || ||||||||||||||||||| ||||||||||| |||| |
Sbjct 83 AGTTCCAAACAGGATGCTTAGGCGATTGAAGAAAGCTAAATCGATCTCCGATTTATGT-C 141
Query 169 TGGATCTGAAACCTTCGATTCCGAAAACCCCGACGGCGAGGATCTGGGTAAGTCTGAATT 228
||| || | |||||||||| ||||||||||||||||||||
Sbjct 142 -----CTG--------GA-T---------CCGACGGCGATGATCTGGGTAAGTCTGAATT 178
Query 229 GCAGTCTGCGAAGGGTTGCGATGGGATTGAGGAAGAAGATGGGGTTCCATCTGATCTCGA 288
||||||||||||||||| ||||||| ||||||||||||| || |||| ||||||||||||
Sbjct 179 GCAGTCTGCGAAGGGTTTCGATGGGTTTGAGGAAGAAGACGGCGTTCGATCTGATCTCGA 238
Query 289 CGGTTTGGGTGTAGAGGATGGAGTTACCGCGAGGAAGGT-ACTTGATTTTGATTATGTGC 347
||||||||||| ||||||| ||||||||| | ||||| | |||||||||||| |||||
Sbjct 239 GGGTTTGGGTGTGGAGGATGAAGTTACCGCAAAAAAGGTTA-TTGATTTTGATTCTGTGC 297
Query 348 CTGAGTTTAATCAGACGATCGAAGATCTGGGCGAGAAAAGTG--GAAG-CGAAATCTCTG 404
|||||||||||||||| | |||||||||||||| ||| ||| |||| |||||||||||
Sbjct 298 CTGAGTTTAATCAGACTCTTGAAGATCTGGGCGATAAAGGTGAAGAAGACGAAATCTCTG 357
Query 405 ATTCGGAAACAAGAGATGAAATTAGGGTT-TCTGAAACGACGGAATCTGAAAAGGAG-GA 462
|||||||||| |||||||||||||||| | | |||||| |||||| ||| ||||||| |
Sbjct 358 ATTCGGAAACTAGAGATGAAATTAGGGCTGT-TGAAACAACGGAAGCTGGAAAGGAGCGG 416
Query 463 TCCGGATTTCGAGACGACTGTGCATGAATTTGATTCCCCAATG-GAGGAATTGGGTGAGA 521
|| ||| | | | | | | || |||||| ||| | | | |||| | | |
Sbjct 417 -CCA-ATT---A-ATG-C-GCCC--GAGTTTGATGG---AATCTGTG-ATTTGGAT-ACA 461
Query 522 AAGGTGAAGACGAAGAGGAAATTAGGGTTCCGGAAAC---GAAGGAAGCTGGAAAGAAGC 578
| |||| | || || |||||||| ||||||| ||||||||||||||||||||
Sbjct 462 --G---AAGA--A-GA--AA-TTAGGGTTTCGGAAACAACGAAGGAAGCTGGAAAGAAGC 510
Query 579 GACCAATTGTGGAGACACGTGATggagagggaaaggagagaaagagagataagaagagga 638
|| | ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 511 GATCGATTCCGGAGACAAGTGATGGAGAGGGGAAGGAGAGAAAGAGAGATAAGAAGAGGA 570
Query 639 agaagaagagTGATGACTTTGATGAGCTGCCAGTCTCTACTGCTTCCATGAACATGACTA 698
| ||||||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct 571 ACAAGAAGAGTGACGATTTTGATGAACTACCAGTCTCTACTGCCTCCATGAACATGACTA 630
Query 699 AGAAGGAAAGAAGGGAATATCTTGATCAGCTTCGTGCAGAAAACCAGAGACTCTTGCGAG 758
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 631 AGAAGGAAAGAAGGGAATATCTTGATCAGCTTCGTGCAGAAAATCAGAGGCTCTTGCGAG 690
Query 759 AAACGAGAGATGCTGCCTTTGAAGCAGCCCCTCTTGTCCGAAAGCCGATTTCATCTGTCT 818
|||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 691 AAACTAGAGATGCTGCCTTTGAACCCGCCCCTCTTGTCCGAAAGCCGATTTCATCTGTCT 750
Query 819 TGGAGAAAATTCGCAGAAGAAAAGAAGAGATTTCAAAACAATTCCTTAGTAGGAAGAAGT 878
||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 751 TGGCGAAAATTCGAAGAAGAAAAGAGGAGATTTCAAAACAATTCCTTAGCAGGAAGAAAT 810
Query 879 CCAAATCTATTGACATATGCGACCG-GGATGATTTTGAAGATGTTGTAGCTGAAGAGATG 937
||||||||||||| ||||||||| | |||||||||||| || |||||||||||||||| |
Sbjct 811 CCAAATCTATTGATATATGCGAC-GAGGATGATTTTGAGGAAGTTGTAGCTGAAGAGAAG 869
Query 938 AATGAAGATATGAATTTAACAAGCAAGCAAAATTC-TGCAGGACAGCATTGCTCGGAGGA 996
|||||||| | | | | |||||||||||| | || |||||||||||||||||||||
Sbjct 870 AATGAAGAAA-G--T--A-CAAGCAAGCAAAGC-CATGGAGGACAGCATTGCTCGGAGGA 922
Query 997 CTCTGCAGGTCCGTCGGAGAACTCAGACAGTCCCTCT-A-AAAGAGAAGCTGAAAGTAAC 1054
|||||||||||| | ||||||||||| |||||||||| | ||| | |||||||||||| |
Sbjct 923 CTCTGCAGGTCCATTGGAGAACTCAGGCAGTCCCTCTTACAAA-A-AAGCTGAAAGTAGC 980
Query 1055 CCTACTCATCAGGATCCATCCGTGTGTCCACAAACGATTAACTCTGGAGATGAACTTCTT 1114
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 981 CCTACTCATCAGGATCCATCCCTGCGTCCACAAACGATTAACTCTGGAGATGAACTTCTA 1040
Query 1115 GAGAAGATGTCAAGCAGATCTTTGGAAGAAGTAATGACACCGTCGGTAGTTGCCATGAAC 1174
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1041 GAGAAGACGTCAAGCAGATCTTTGGAAGAAGTAATGACACCGTCAGTAGTTGCCATGAAC 1100
Query 1175 CTCAAACTAAACCTGTCTCCTGTGCCTGACAAATCTTCCGAAGAAGCAGAGTACATAAAG 1234
|||||||| |||||||||||||||||||| |||||||| |||||| ||||||||| ||||
Sbjct 1101 CTCAAACTTAACCTGTCTCCTGTGCCTGATAAATCTTCTGAAGAAACAGAGTACAGAAAG 1160
Query 1235 GGAAATTCTGATCCGGAGATCCATGATTC-TCC--TGGCGACCCTGTTAGAAAATTTATT 1291
| |||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct 1161 GAAAATTCTGATCCTGAGACCCATGATTCATCCCCTGGCGACCCTGTTAGAAAATTTATT 1220
Query 1292 GATGAGGATGCTGAAGAGGAAGATGACAGTGACAATGATTTACTCCGATTTGAGGATGAG 1351
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1221 GATGAGGATGCTGAAGAGGAAGATGACAGCGACAATGATCTACTCCGATTTGAGGATGAG 1280
Query 1352 GATGATGACGAAGATGAAGACGATGATGATCTCAGGGATATGATTGTCAGTCAATTTAAG 1411
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1281 GATGATGACGAAGATGAAGAAGATGATGATCTCAGGGATATGATTGTCAGTCAATTTAAG 1340
Query 1412 GAAGATCCAACTGATAAAGATAGACGTAATGAACTGCATCAGAAGTGGCTCGAGCAACAA 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1341 GAAGATCCAACTGATAAAGATAGACGTAATGAACTGCATCAGAAGTGGCTCGAACAACAA 1400
Query 1472 GATGCTGCAGGGACAGAGAAACTCTTACAGAAGCTTAAACGTGGTGTGCAGCatgatgaa 1531
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1401 GATGCTGCAGGGACAGAGAAACTCTTACAGAAGCTTAAACGTGGTTTGCAGCATGATGAA 1460
Query 1532 acattattgtctgaagatgaagatgacgatgttgatgatgatgatgaagagag-gcctga 1590
|||||||||||||||||||||||||| ||| |||| ||||||||||||||| || |||
Sbjct 1461 ACATTATTGTCTGAAGATGAAGATGAAAATGACGATGCTGATGATGAAGAGAGAGC-TGA 1519
Query 1591 aggtgctgatggtgaagaagtgcaaaaacctgaagccaatgaagatgaagatgaagatga 1650
|| |||||||| |||||||||||||||||||||||||| |||||| | | || |||||
Sbjct 1520 AGATGCTGATGATGAAGAAGTGCAAAAACCTGAAGCCAGTGAAGA--A-G--GA-GATGA 1573
Query 1651 agatgaagaagatCCAAGTCATGCAAATTCCATGCGAATGACCATAAAGAAAATAAAGGA 1710
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1574 AGATGAAGAAGATCCAAGTCATGCAAATTCCATGCGAATGACCATAAAGAAAATTAAGGA 1633
Query 1711 AATGATCCCTTTAATGTTCACAGATGAAGATGATGTTTATGTGTCATCAGACGATGAGGA 1770
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1634 AATGATCCCTTTAATGTTCACAGATGAAGATGATGTTTATGTGTCATCTGACGACGAGGA 1693
Query 1771 AATGGAAAAGAAGCTTCTGCAACAGCGACTGTACAAGAAAATGGAGCTAAAGGCCAAGTC 1830
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1694 AATGGAAAAGAAGCTTATGCAACAGCGATTGTACAAGAAAATGGAGCTAAAGGCCAAGTC 1753
Query 1831 TTCATCATCCACTGCGGATGAAAACTCTGAAGAAATTCTTCGCCACATCAAGAAGCCTGA 1890
||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1754 TTCGTCATCCACTGGGGATGAAAACTCTGAGGAAATTCTTCGCCACATCAAGAAGCCTGA 1813
Query 1891 GATCAAGAAGAAAGCAAAACCTTCTTCTTTTAAAGAGAGGGCACTCATGGAAATAAACAA 1950
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1814 GATCAAGAAGAAGGCAAAACCTTCTTCTTTTAAAGAGAGGGCACTCATGGAAATAAACAA 1873
Query 1951 AAACCCTGCAGCATCCAAGTCATCGTTCTTGGGTAGACTTACAAAGAGTTCCATATCAGA 2010
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1874 AAACCCTGCGGCATCCAAGTCATCGTTCTTGGGTAGACTTACAAAGAGTTCCATGCCAGA 1933
Query 2011 AGGATCTCGCAAGCGCGGTTCAAATGTTGTACGTGGCTATATATTCGAACGCGATGACAG 2070
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1934 CGGATCTCGCAAGCGCGGTTCAAACGTTGTACGTGGCTATATATTCGAACGTGATGACAG 1993
Query 2071 TAACAGCAAAAGCTCAAATTCAGTGGCAGAGGAACCTTCAGTTCCAGAGACGATTATTCA 2130
|||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| |
Sbjct 1994 TAACAGCAAAAGCTCAAACACAGTGCCAGAGGAACCTTCAGCTCCAGAGACGATTATTAA 2053
Query 2131 AGAAAAAAGCCGACCAAAAAGAGCTCCAGCAAAATTCACTGCCTCACAGTCACAAGAGAG 2190
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2054 AGAAAAAAGCCGACCAAAAAGAGCTCCGGCAAAATTCACTGCCTCACAGTCACAAGAGAG 2113
Query 2191 ATCAACAACATTACAGGCGACGGTGGTGGAGAAGGAGACGAGCACGAGGCAACGATCAAC 2250
|||| |||||||||||||||| | |||||| | |||||||||||||||||||| | ||
Sbjct 2114 ATCAGCAACATTACAGGCGACAGCAGTGGAG--G-AGACGAGCACGAGGCAACGAACGAC 2170
Query 2251 CTTGTACGAGATTCTAAAGATGTCATCAAAGAAAACTTCCTTCAATTCACGCGAGACAAT 2310
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 2171 CTTGTACGAGATTCTAAAGATGTCATCAAAGAAAACTTGCTTCAATTCACGGGAGACAAT 2230
Query 2311 GATAAGCAGCAACCACACTGAGTCTATATTTGCTGCTTTCAAACTGGATAAGAAACCAGT 2370
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2231 GATAAGCAGCAACCACACCGAGTCTATATTTGCTGCTTTCAAACTGGATAAGAAACCAGT 2290
Query 2371 TAAGACAAATCCACAATTGCAATGCAACGGCACGTGTGGTGAATGAACGTGAATCACTGG 2430
|||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 2291 TAAGACGAATCCACAATTGCAAAGAAACAGCACGTGTGGTGAATGAACGTGAATCACTGG 2350
Query 2431 ATCGTGACCCTTTTTGTTAAC-ATGTGGCCACCAAAACGGCGTAGGACCGCGCGTTTTGG 2489
|||||| | ||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2351 ATCGTGTCACTTTTTGCTAATGA-GTGGCCACCAAAACGGCGTAGGACCGCGCGTTTTGG 2409
Query 2490 CCT-TTATCTGATCAGA--CT-CAGTCT--C-GATTCTCAAGTACATAGGTTGGTTGCTG 2542
| | || ||||||||| || || ||| | ||||||||||||||||||||||||||||
Sbjct 2410 CATCTTG-CTGATCAGATTCTTCACTCTTTCCGATTCTCAAGTACATAGGTTGGTTGCTG 2468
Query 2543 TAACTACAGAGACTTTAGCG--AGA--GA--TTAGATCGTCCGTCTTAGTCATTCGAATC 2596
|||||||||||||||||| | ||| || |||||||||||||| ||||||| ||||||
Sbjct 2469 TAACTACAGAGACTTTAGTGGGAGATTGAGATTAGATCGTCCGTCGTAGTCATCCGAATC 2528
Query 2597 TTTTCTTAGAGATTGAGATCAGAATTTTCTATTCAAAGTTTTGTTTTATATATTCAATGT 2656
|||||||||| ||||||||||||||| | ||| ||||||||||||||||| ||| |||||
Sbjct 2529 TTTTCTTAGACATTGAGATCAGAATTAT-TATCCAAAGTTTTGTTTTATACATTGAATGT 2587
Query 2657 CT-ACACTATACTATTTCTTTA-TAATGGATAGGATTCTATTCAAGAATCATTCAACTAA 2714
| | | |||||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 2588 TTTATAGTATACTATTTCTTTTCTAATGGATAGAATT-TATTCAAGAATCATTCAACTAA 2646
Query 2715 -CATCCATTAAAGCAAACAGTTTTT 2738
|||||||||| |||||||||||||
Sbjct 2647 ACATCCATTAACGCAAACAGTTTTT 2671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103300744440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5