BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75160.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926896 jgi|Araly1|926896|scaffold_202457.1 1882 0.0
> Ahg926896 jgi|Araly1|926896|scaffold_202457.1
Length=1228
Score = 1882 bits (1019), Expect = 0.0
Identities = 1160/1229 (94%), Gaps = 6/1229 (0%)
Strand=Plus/Plus
Query 80 aaaaaaaaaaaaTTATAAATGAAAATGAGGAAGCTTTGTCCAAATTTGGACAGAGAAGAC 139
||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3 AAAAAAAAATATTTATAAATGAAAATGAGGAAGCTTTGTCCAAACTTGGACAGAGAAGAC 62
Query 140 GGGTTAGAGACGGTGTTAGAGGTTCCGGTGCCGGAAGAAATGTTTACAAAGATGGGAAGC 199
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 63 GGGTTAGAGACGGTGTTAGAGGTTCCGGTGCCGGAAGAAATGTTTACGAAGATGGGAAGC 122
Query 200 AACGC-CCAAGGGCGGTGGAGGAATATGCACGCTCTCATGAAGGCACACGCCGTTGTGAC 258
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 AATGCGGC-GGGGCGGTGGAGGAATATGCACGCTCTCATGAAGGCACACGCCGTTGTGAC 181
Query 259 CGCGGTGGCGACTGATGT-AAGAACGCCGGCGTCATCGTCATCGATGAGTAATGTCAACA 317
||||||||||||||| || || |||||||||||||||||||||||||||||||||||| |
Sbjct 182 CGCGGTGGCGACTGACGTCAA-AACGCCGGCGTCATCGTCATCGATGAGTAATGTCAATA 240
Query 318 TGCATTTGCAGTCAAAATCAGACAACGAGTTTGTGGCCTTGTTGAAAATCGTAGGAAGTC 377
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 TGCATTTGCAGTCAAAATCAGACAACGAGTTTGTGGCCTTGTTGAAAATCGTGGGAAGTC 300
Query 378 CTCTTATTCCTTTTCATGTCCCGCTCGAGTTTTGTCTATCCCGACCAATCAACGACACTT 437
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 301 CTCTTATTCCTTTTCATGTCCCTCTCGAGTTTTGTCTCTCCCGACCCATCAACGACACTT 360
Query 438 CCATCGAGGCGTCGACGGCTAAATACATAGTGCAACAGTACGTGGCAGCGTGCGGAGGTC 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCATCGAGGCGTCGACGGCTAAATACATAGTGCAACAGTACGTGGCAGCGTGCGGAGGTC 420
Query 498 CAACGGCTTTGAACGCAGTGAAAAGTATGTACGCGGTGGGGCAAGTAAGGATGCAAGGCT 557
|| |||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 421 CAGCGGCTTTGAACGCAGTGAAAAGCATGTACGCGGTGGGGCAGGTGAGGATGCAAGGCT 480
Query 558 CCGAGATGGTTGCTGGAGAGGACGAAGGGACGGGTACGCCGGTGCGACTTGGTAAAGGCA 617
||||||||||||||||||||||| |||||||||||||||||||| | || ||||||||||
Sbjct 481 CCGAGATGGTTGCTGGAGAGGACCAAGGGACGGGTACGCCGGTGAGGCTGGGTAAAGGCA 540
Query 618 GTTTCGAGGTCGGAGGTTTTGTTTTATGGCAAAAGAATCCAAATCTTTGGTTCTTGGAGC 677
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 GTTTCGAGGTCGGAGGTTTTGTTTTATGGCAGAAGAATCCAAATCTTTGGTTCTTGGAGC 600
Query 678 TAGTGGTTTCCGGTTTCAAGATTAGCGCTGGTAGTGACGGCAAAGTGGCTTGGAACCAAT 737
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 601 TAGTGGTTTCCGGTTTCAAAATTAGCGCCGGTAGTGACGGCAAAGTGGCTTGGAACCAAT 660
Query 738 CCTCTACTCAACCTTCTCAGGCCCACCGTGGTCCTCCTCGTCCTCTCCGCCGATTTTTTC 797
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 661 CCTCTACTCAACCTTCTCAGGCCCACCGTGGCCCTCCTCGTCCTCTCCGCCGCTTTTTTC 720
Query 798 AGGGACTAGACCCGAGATGCACAGCGAGTTTGTTCTTAGACGCCGTTTGCATCGGTGAAC 857
|||||||||||||||||||||| || ||| | ||||||||||| ||||||||||| ||||
Sbjct 721 AGGGACTAGACCCGAGATGCACGGCAAGTCTATTCTTAGACGCTGTTTGCATCGGCGAAC 780
Query 858 AACCCGTTAACGGTGAAGACTGTTTCGTCTTAAAAG-TAGAAACACCGTCAGATATTCTC 916
|| | |||||||||||||||||||| |||||||| | |||||||||||||||||||||||
Sbjct 781 AATCAGTTAACGGTGAAGACTGTTTTGTCTTAAA-GCTAGAAACACCGTCAGATATTCTC 839
Query 917 AAAGCACAATGCTCACCAAACACGGAGGTGATCCACCACACGGTATGGGGTTACTTCAGC 976
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 840 AAGGCACAATGCTCACCAAACACGGAAGTGATCCACCACACGGTGTGGGGTTACTTCAGT 899
Query 977 CAACGAACCGGACTTCTCGTAAAGTTCGGTGACACAAAACTCGTGAGAGTCAAATCCGGA 1036
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 CAACGAACGGGACTTCTCGTCAAGTTCGGTGACACAAAACTCGTGAGAGTCAAATCCGGT 959
Query 1037 AGAGGCAAAAACGACGGCGTTTTTTGGGAGACAAGTATGGAGTCCATCATCGACGATTAC 1096
|||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 AGAGGCAAAAGCGATGGCGTTTTTTGGGAGACAAGTATGGAGTCAATCATCGACGATTAC 1019
Query 1097 ATATTCGTTGACGCAGTCAACATTGCTCATGGTGGTCAAACCGTGACCACACTCTACCGC 1156
|||||||||||||| || ||||| ||||| || |||||||| ||||| || || || |||
Sbjct 1020 ATATTCGTTGACGCTGTAAACATAGCTCACGGCGGTCAAACTGTGACAACGCTTTATCGC 1079
Query 1157 TACGGTGGAGCTGTTAATCACCGGAGAAGAATAGAGGAGAAATGGCGTATCGAGGAGGTG 1216
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1080 TACGGCGGAGCTGTAAATCACCGGAGAAGAATAGAGGAGAAATGGCGGATCGAGGAGGTG 1139
Query 1217 GATTTCAATATTTGTGGATTGTGTTTGGAGAGCTTTTTACCACCGTCGGATATCAACAAT 1276
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1140 GATTTTAATATTTGTGGATTGTGTTTGGAGAGCTTTTTGCCACCGTCGGATATCAACAAC 1199
Query 1277 GATCATTAGGCACGATGGAGAAATCGTTA 1305
|||||||||| ||| ||||||||||||||
Sbjct 1200 GATCATTAGGTACGGTGGAGAAATCGTTA 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5