BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G75166.1

Length=86
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926897 jgi|Araly1|926897|scaffold_202458.1                        139    2e-33


> Ahg926897 jgi|Araly1|926897|scaffold_202458.1
Length=241

 Score =  139 bits (75),  Expect = 2e-33
 Identities = 85/89 (96%), Gaps = 3/89 (3%)
 Strand=Plus/Plus

Query  1    AACAATGATGAGATATTAGCAGACGGGCGGTCTGAATTGATGCCGTGTAGATTGTCTGCC  60
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  144  AACAATGATGAGATATTAGCAGACGGGCGGTCTGAATTGATGCCATGTAGATTGTCTGCC  203

Query  61   ATCGCTAC--TAT-GTAGCTTCTCTGAGT  86
            ||||||||  ||| |||||||||||||||
Sbjct  204  ATCGCTACAATATCGTAGCTTCTCTGAGT  232



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 2446139712


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5