BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75170.1
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926898 jgi|Araly1|926898|scaffold_202459.1 1520 0.0
> Ahg926898 jgi|Araly1|926898|scaffold_202459.1
Length=936
Score = 1520 bits (823), Expect = 0.0
Identities = 901/939 (96%), Gaps = 4/939 (0%)
Strand=Plus/Plus
Query 178 TGGACCCAAAGTGCAATTTTCAAAAATGTTTCGCTGGAAGAATTCTTCTCAAACCGAACA 237
||||||| |||||||||| || ||||||||||| |||||||||||||| |||||||||||
Sbjct 1 TGGACCC-AAGTGCAATTCTC-AAAATGTTTCGATGGAAGAATTCTTCGCAAACCGAACA 58
Query 238 AGAGCAGAAAGAGGCAGCTCTCAGAGAGGCAAAGATGAAAGAGCTTAAGACTCTCATAGG 297
|||||| || ||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 59 AGAGCATAATGAGACAGCTCTCAGAGAGGCAAAGATGAAAGAGCTTAAGGCTCTCATAGG 118
Query 298 TCAGCTTTCTGGAAGGAATTCACTGTATTGTTCAGATGCATGTCTGAAGAGATATCTGGA 357
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TCAGCTTTCTGGAAGGAGTTCACTGTATTGTTCAGATGCATGTCTGAAGAGATATCTGGA 178
Query 358 AGCTAGGAATTGGAATGTAGGCAAAGCCAAGAA-GATGCTCGAGGAGACGCTCAAATGGA 416
||||||||||||||| |||||||||||||| || ||||||||||||||| || |||||||
Sbjct 179 AGCTAGGAATTGGAACGTAGGCAAAGCCAA-AAGGATGCTCGAGGAGACTCTGAAATGGA 237
Query 417 GATCGAGTTTTAAACCCGAGGAAATCCGATGGAATGAAGTTTCAGGTGAAGGTGAGACTG 476
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GATCGACTTTTAAACCCGAGGAAATCCGATGGAATGAAGTTTCAGGTGAAGGTGAGACTG 297
Query 477 GTAAGGTTTACAAAGCTGGATTCCATGACAGGCATGGAAGAACGGTTCTTATACTGAGAC 536
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GTAAAGTTTACAAAGCTGGATTCCATGACAGGCATGGAAGAACGGTTCTTATACTGAGAC 357
Query 537 CCGGCTTGCAGAACACAAAATCGTTGGAGAACCAGATGAAACATCTGGTGTATCTCATTG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CCGGCTTGCAGAACACAAAATCGTTGGAGAACCAGATGAAACATCTGGTGTATCTCATTG 417
Query 597 AGAATGCTATTCTGAATCTGCCAGAGGATCAAGAACAGATGTCTTGGCTTATTGACTTCA 656
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGAATGCTATTCTGAATCTTCCAGAGGATCAAGAACAGATGTCTTGGCTTATTGACTTCA 477
Query 657 CGGGTTGGTCAATGAGCACTAGTGTGCCTATTAAATCTGCCAGAGAAACTATTAATATTC 716
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 478 CGGACTGGTCAATGAGCACTAGTGTGCCTATTAAATCTGCCAGAGAAACTATAAATATAC 537
Query 717 TGCAAAATCACTACCCTGAGAGACTAGCTGTAGCTTTCCTCTATAATCCTCCAAGACTCT 776
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 538 TGCAAAATCACTACCCAGAGAGACTAGCTGTAGCTTTCCTTTATAATCCTCCAAGAATCT 597
Query 777 TTGAGGCGTTCTGGAAGATTGTGAAGTACTTCATTGATGCAAAGACATTCGTCAAGGTGA 836
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 598 TTGAGGCATTCTGGAAGATTGTGAAGTACTTCATTGATGCAAAGACGTTCGTCAAGGTGA 657
Query 837 AGTTTGTTTACCCAAAGAACTCGGAAAGCGTGGAGCTTATGAGCACATTTTTCGACGAGG 896
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 658 AATTTGTTTACCCAAAGAACCCGGAAAGCGTGGAGCTTATGAGCACATTTTTCGACGAGG 717
Query 897 AAAATCTCCCAACCGAATTTGGAGGGAAAGCTTTGTTGCAGTATAACTATGAAGAGTTCT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 718 AAAATCTCCCAACCGAATTTGGAGGGAAAGCTTTGTTGCAGTATAACTATGAAGAATTCT 777
Query 957 CCAAGCAAATGAACCAAGACGATGTTAAAACTGCTAACTTTTGGGGATTGGGTCACAGTA 1016
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 778 CCAAGCAAATGAACCAAGACGATGTTAAAACTGCAAACTTTTGGGGATTGGGTCACAGTA 837
Query 1017 ACAATAACCAGCTGCACGCGAGCAACGGGTTTTCTGGAGCTGAGATTGCCCCTGAGCCAA 1076
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 838 ACAATAACCAGCTGCACGTGAGCAACGGGTTTTCTGGAGCCGAGATTGCCCCTGAGCCAA 897
Query 1077 TCCAAAACCACCCTTGACTGGTTCTGAAGGCAATGTATT 1115
|||||| ||||||||||| |||| |||||||| || |||
Sbjct 898 TCCAAACCCACCCTTGACCGGTTTTGAAGGCAGTGAATT 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48377981673
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5