BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75190.1
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476662 jgi|Araly1|476662|fgenesh2_kg.2__1792__AT1G75190.1 878 0.0
> Ahg476662 jgi|Araly1|476662|fgenesh2_kg.2__1792__AT1G75190.1
Length=689
Score = 878 bits (475), Expect = 0.0
Identities = 617/679 (91%), Gaps = 36/679 (5%)
Strand=Plus/Plus
Query 109 TTTGTTTCTGTCTGTAAAACATAAAAGAAAATTTTATTGCTCTTGAAGATATTAAAAATC 168
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1 TTTGTTTCTGTCTGTAAAACACAAAAGAAAA-TTTATTGCTCTTGAAGATATTAAAAATC 59
Query 169 AG---A-C-AAGCTGTTCAAGAAAAATATTATTCTGTTGA-ATAAAGT-AAACTGATGGG 221
|| | | |||||||||||||||||||||| |||||||| | ||||| |||||||||||
Sbjct 60 AGACAAGCTAAGCTGTTCAAGAAAAATATTACTCTGTTGAGA-AAAGTAAAACTGATGGG 118
Query 222 GAAGAGAAGGTTTCAGAAAGCAAAGGAAACGTCGTCAGTAGCAGAAGCTTCATCTCCGAC 281
||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||||||
Sbjct 119 AAAGAGAAGGTTTCAGAAAGCAAAGG-AAC--CGTCAGTTGCAGAAGTTTCATCTCCGAC 175
Query 282 GGAGTCTCAGGCTACAAGGAGACGAAGAGGAAGGCCAAGGAAGAATCTTGAGAACCCAGA 341
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 176 GGAGTCTCAGACTACAAGGAGACGAAGAGGAAGGCCAAGGAAGAATCTTGAGAATCCAGA 235
Query 342 AGATTTCaagaaggaagaatctgaggaagacgaggattacgaagagtacgaggacgaaga 401
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 236 AGATTTCAAGAAGGAAGAATCTGAAGAAGACGAGGATTACGAAGAGTACGAGGACGAAGA 295
Query 402 agaagaagacgaagaagctgaggtggttattaacagagagaagctgaagaagaaagTTAG 461
|||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 296 AGAAGAAGACGAAGAAGCTGAGGT--T-ATTAACAGAGAGAAGCAGAAGAAGAAAGTTAG 352
Query 462 GAGCAGTAGTGGTAGTATGGAAAAGGAGCAAAAGATGAAACATGAAGAGTTAGAGGAGGA 521
||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 353 GAGTAGTAGT---AGTATGGAAGAGGAGCAAAAGATGAAGCATGAAGAGTTAGAGGAGGA 409
Query 522 GGAG-A-A-GCCGGAGATGACGGTCAAGGTAGTGGTTCCACCGCCGTCGTCTAGACGGTC 578
|||| | | ||||||||||| | | ||||| |||||||||||||| ||||| ||||||||
Sbjct 410 GGAGGAGAAGCCGGAGATGAAGATGAAGGTGGTGGTTCCACCGCCCTCGTCCAGACGGTC 469
Query 579 GAGGAGGAAAAGCACGCCGGTGAAGAGCTGGTAAA-CTTTAATTACCGTATCATTAATTA 637
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||
Sbjct 470 GAGGAGGAAAAGCACGCCGGTGAAGAGCTGGTAAATCTTTA-TTACCGTATCATCAAT-- 526
Query 638 ATGGAGtttttgtttttgtgtgtgtttttGGATTTAACTATTGTTGGATTATAAATTAAT 697
|||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 527 --GGAGTTCTTGTGTTTGTGTGTGTTTTTGGATT-AACTATTGTTGGATTATAAATTAAT 583
Query 698 TGAAACTC-TCATGGGAAGaaaaaaaaaCA-ATTG-AT--TTT-T-GGATTTGTTAGTTC 750
|||||| | |||||||||||||||| || ||| || ||| | |||| |||||||||
Sbjct 584 TGAAAC-CATCATGGGAAGAAAAAACAATTGATTTTATAATTTCTTGGATCTGTTAGTTC 642
Query 751 AAAACAAGAAACAAATCTT 769
|||||||||||||||||||
Sbjct 643 AAAACAAGAAACAAATCTT 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31298914857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5