BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75220.1
Length=1944
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926902 jgi|Araly1|926902|scaffold_202463.1 2510 0.0
Ahg472174 jgi|Araly1|472174|fgenesh2_kg.1__2128__AT1G19450.1 1537 0.0
> Ahg926902 jgi|Araly1|926902|scaffold_202463.1
Length=1505
Score = 2510 bits (1359), Expect = 0.0
Identities = 1456/1504 (97%), Gaps = 2/1504 (0%)
Strand=Plus/Plus
Query 207 TAGAAGATAGAATCAAAAGATGAGTTTCAGGGATGATAATGAGGAGGCTAGGAATGATTT 266
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 3 TAGAAGATAGAATCAAAAGATGAGTTTCAGAGATGATAATGAGGAGGGTAGGAATGATTT 62
Query 267 GCGTCGGCCGTTTATTCACACCGGAAGCTGGTACCGGATGGGTTCGAGACAATCGAGTAT 326
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 63 GCGACGGCCGTTTATACACACCGGAAGCTGGTACCGGATGGGTTCGAGACAGTCGAGTAT 122
Query 327 GATGGGTTCCTCTCAAGTTATTCGAGACAGCTCTATCTCTGTTCTTGCATGTGTTTTGAT 386
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GATGGGCTCGTCTCAAGTTATTCGAGACAGCTCTATCTCTGTTCTTGCATGTGTTTTGAT 182
Query 387 CGTTGCTCTTGGCCCTATTCAATTCGGATTCACTTGTGGTTATTCATCTCCAACTCAAGC 446
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CGTTGCTCTTGGTCCTATTCAATTCGGATTCACTTGTGGTTATTCATCTCCAACTCAAGC 242
Query 447 TGCAATCACCAAGGATCTCGGTTTAACAGTATCTGAGTACTCTGTGTTTGGTTCTCTTTC 506
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 243 TGCAATCACTAAGGATCTCGGTTTAACGGTATCTGAGTACTCTGTATTTGGTTCTCTGTC 302
Query 507 CAATGTGGGTGCTATGGTTGGTGCAATTGCCAGTGGTCAGATTGCAGAATACATTGGACG 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CAATGTGGGTGCTATGGTTGGTGCAATTGCCAGTGGTCAGATTGCAGAATACATTGGACG 362
Query 567 AAAAGGGTCTCTTATGATTGCTGCAATTCCCAATATCATTGGATGGCTTTGCATATCATT 626
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AAAAGGGTCTCTGATGATTGCTGCAATTCCCAATATCATTGGATGGCTTTGCATATCATT 422
Query 627 TGCAAAAGATACTTCTTTTCTTTACATGGGAAGACTTTTAGAAGGCTTTGGCGTTGGGAT 686
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 423 TGCAAATGATACTTCTTTTCTTTACATGGGACGACTTTTAGAAGGCTTTGGCGTTGGGAT 482
Query 687 CATCTCTTACACTGTACCTGTATATATCGCTGAGATAGCTCCACAAAATATGAGAGGAGG 746
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 483 CATCTCTTACACTGTACCTGTATATATCGCGGAGATAGCTCCACAAAATATGAGAGGAGG 542
Query 747 ATTGGGTTCGGTTAACCAGCTTTCTGTGACAATTGGAATAATGTTGGCGTATTTACTTGG 806
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 543 ATTGGGTTCGGTTAACCAGCTTTCTGTGACAATTGGAATAATGTTGGCGTATCTACTTGG 602
Query 807 CCTCTTTGTTCCATGGAGAATTCTTGCAGTTCTGGGGATATTGCCGTGTACATTATTGAT 866
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 603 CCTCTTTGTTCCATGGAGAATTCTTGCAGTTCTGGGGATATTGCCGTGCACAGTATTGAT 662
Query 867 ACCAGGTCTCTTTTTCATCCCCGAATCCCCTCGCTGGCTGGCAAAAATGGGTATGACAGA 926
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 ACCCGGTCTCTTTTTCATCCCCGAATCCCCTCGCTGGCTGGCAAAAATGGGTATGACAGA 722
Query 927 TGAATTTGAAACTTCATTACAAGTTCTTCGAGGATTTGAGACTGATATTACCGTTGAAGT 986
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 723 TGATTTTGAAACTTCATTACAAGTTCTTCGAGGATTCGAGACTGATATTACAGTTGAAGT 782
Query 987 TAATGAAATCAAGAGATCTGTGGCATCATCTACAAAGCGAAATACAGTTCGGTTTGTAGA 1046
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 783 TAATGAAATCAAGAGATCTGTGGCATCATCTACAAAGCGAAATACAGTTCGGTTTGCAGA 842
Query 1047 TCTCAAACGCAGGAGATACTATTTCCCACTTATGGTTGGTATAGGGTTGCTTGTACTTCA 1106
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 843 TCTCAAACGCAGGAGATACTATTTCCCACTTACGGTTGGTATAGGGTTGCTTGTACTTCA 902
Query 1107 ACAACTTGGTGGAATTAATGGTGTCCTATTCTATTCCAGTACAATATTTGAATCTGCAGG 1166
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 903 ACAACTTGGTGGAATTAATGGCGTCCTATTCTATTCCAGTACAATATTTGAATCTGCAGG 962
Query 1167 AGTTACATCGAGTAACGCAGCAACATTTGGGGTCGGGGCTATTCAGGTAGTAGCGACTGC 1226
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 963 AGTTACATCGAGTAACGCAGCAACATTTGGGGTCGGGGCTATTCAGGTAGTCGCTACTGC 1022
Query 1227 AATATCCACTTGGTTGGTGGACAAAGCAGGTCGTCGGCTTCTGCTTACTATCTCTTCGGT 1286
|||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1023 AATATCGACATGGTTGGTGGACAAAGCAGGTCGTCGACTTCTGCTTACCATCTCTTCGGT 1082
Query 1287 TGGGATGACGATTAGCCTTGTAATTGTTGCAGCTGCTTTCTATCTTAAGGAATTTGTGTC 1346
||||||||| ||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 1083 TGGGATGACAATTAGCCTTGTAATTGTCGCAGCTGCTTTCTACCTTAAGGGATTTGTGTC 1142
Query 1347 TCCTGATTCAGACATGTACAGTTGGCTGAGCATATTGTCAGTAGTTGGAGTTGTGGCAAT 1406
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TCCTGATTCAGACATGTACAATTGGCTGAGCATATTGTCAGTAGTTGGAGTTGTGGCAAT 1202
Query 1407 GGTTGTCTT-TTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAGATCC 1465
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 GGTTGT-TTCTTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAGATCC 1261
Query 1466 TTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCCAATTGGTTCTTTT 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCCAATTGGTTCTTTT 1321
Query 1526 CTTGGTTGATCACCATGACAGCAAATTTGCTGTTAGCCTGGAGCAGTGGAGGAACTTTCA 1585
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1322 CTTGGTTGATCACTATGACAGCAAACTTGCTCTTAGCCTGGAGCAGTGGAGGAACTTTCA 1381
Query 1586 CTCTGTATGGATTGGTTTGTGCATTCACAGTGGTGTTCGTGACTCTATGGGTTCCTGAGA 1645
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 CTCTGTACGGGTTGGTTTGTGCATTCACAGTGGTGTTCGTGACTCTATGGGTTCCTGAGA 1441
Query 1646 CCAAAGGCAAAACTCTTGAAGAACTTCAATCCTTGTTCAGATGAACAAATTGAAACAACT 1705
||||||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 1442 CCAAAGGCAGAACTCTTGAAGAACTTCAAGCCTTGTTCAGATGAACATACTGAAACAACT 1501
Query 1706 TCAT 1709
||||
Sbjct 1502 TCAT 1505
> Ahg472174 jgi|Araly1|472174|fgenesh2_kg.1__2128__AT1G19450.1
Length=1896
Score = 1537 bits (832), Expect = 0.0
Identities = 1283/1497 (86%), Gaps = 46/1497 (3%)
Strand=Plus/Plus
Query 221 AAAAGATGAGTTTCAGGGATGATAATGAGGAGGCTAGGAATGAT-TTGCGTCGGCCGTTT 279
||||||||||||| |||||||||| || |||| || |||||| || || || ||| ||
Sbjct 230 AAAAGATGAGTTTTAGGGATGATACGGAAGAGGGAAGAAATGATCTT-CGGCGACCG-TT 287
Query 280 ATT-CACACCGGAAGCTGGTACCGGATGGGTTCGAGACAATCGAGTATGATGGGTTCCTC 338
|| ||||||||||| ||||| |||||||||||||||||||| |||||| ||| || ||
Sbjct 288 CTTACACACCGGAAGTTGGTATCGGATGGGTTCGAGACAATCTAGTATGTTGGAATCGTC 347
Query 339 TCAAGTTATTCGAGACAGCTCTATCTCTGTTCTT-GCATGTGTTTTGATCGTTGCTCTTG 397
||||||||||||||||||||| || |||| |||| || ||||||||||| ||||||||||
Sbjct 348 TCAAGTTATTCGAGACAGCTCAATTTCTG-TCTTAGCTTGTGTTTTGATTGTTGCTCTTG 406
Query 398 GCCCTATTCAATTCGGATTCACTTGTGGTTATTCATCTCCAACTCAAGCTGCAATCACCA 457
| |||||||||||||||||||||||||||||||| || |||||||||||||| || || |
Sbjct 407 GTCCTATTCAATTCGGATTCACTTGTGGTTATTCCTCACCAACTCAAGCTGCCATTACTA 466
Query 458 AGGATCTCGGTTTAACAGTATCTGAGTACTCTGTGTTTGGTTCTCTTTCCAATGTGGGTG 517
||||||| |||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||
Sbjct 467 AGGATCTTGGTTTAACTGTATCAGAGTACTCTGTCTTTGGGTCTCTATCCAATGTGGGTG 526
Query 518 CTATGGTTGGTGCAATTGCCAGTGGTCAGATTGCAGAATACATTGGACGAAAAGGGTCTC 577
|||||||||| |||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 527 CTATGGTTGGAGCAATTGCAAGTGGTCAGATTGCTGAATACATTGGACGGAAAGGGTCT- 585
Query 578 TT-ATGATTGCTGCAATTCCCAATATCATTGGATGGCTTTGC-ATATCATTTGCAAAAGA 635
|| ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct 586 TTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTT-CGATATCATTTGCAAAAGA 644
Query 636 TACTTCTTTTCTTTACATGGGAAGACTT-TTAGAAGGCTTT-GGCGTTGGGATCATCTCT 693
||||||||||||||||||||||||| || |||||||| ||| ||||||||||| ||||||
Sbjct 645 TACTTCTTTTCTTTACATGGGAAGA-TTGTTAGAAGG-TTTCGGCGTTGGGATAATCTCT 702
Query 694 TACACTGTACCTGTATATATCGCTGAGATAGCTCCACAAAATATGAGAGGAGGATTGGGT 753
|| || || || || ||||| |||||||| |||||||| | |||||||||| || |||
Sbjct 703 TATACGGTGCCCGTGTATATAGCTGAGATCGCTCCACAGCACATGAGAGGAGCCTTAGGT 762
Query 754 TCGGTTAACCAGCTTTCTGTGACAATTGGAATAATGTTGGCGTATTTACTTGGCCTCTTT 813
|| ||||||||||||||||| |||||||| |||||| ||||||||||||| || ||||||
Sbjct 763 TCAGTTAACCAGCTTTCTGTAACAATTGGGATAATGCTGGCGTATTTACTCGGTCTCTTT 822
Query 814 GTTCCATGGAGAATTCTTGCAGTTCTGGG-GATATTGCCGTGTACATTATTGATACCAGG 872
|||||||||||||||||||| ||| |||| | ||||||| |||||||| |||||||| ||
Sbjct 823 GTTCCATGGAGAATTCTTGCTGTTTTGGGAG-TATTGCCATGTACATTGTTGATACCGGG 881
Query 873 TCTCTTTTTCATCCCCGAATCCCCTCGCTGGCTGGCAAAAATGGG-TATGACAGATGAAT 931
||| |||||||| || ||||| ||||| ||| ||||||| ||||| | |||||||||| |
Sbjct 882 TCTGTTTTTCATTCCTGAATCTCCTCGGTGGTTGGCAAAGATGGGGT-TGACAGATGA-T 939
Query 932 TT-GAAACTTCATTACAAGTTCTTCGAGGATTTGAGACTGATATTACCGTTGAAGTTAAT 990
|| ||||||||||| ||||||||||| |||||||| |||||||| |||||||| ||||||
Sbjct 940 TTCGAAACTTCATTGCAAGTTCTTCGTGGATTTGATACTGATATCACCGTTGAGGTTAAT 999
Query 991 GAAATCAAGAGATCTGTGGCATCATCTA-CAAAGCGAAATACAGTTCGGTTTGTAGATCT 1049
||||||||||||||||||||||||||| |||| || | || ||||||||||||| ||
Sbjct 1000 GAAATCAAGAGATCTGTGGCATCATCTGGCAAA-CGTTCTGCAATTCGGTTTGTAGACCT 1058
Query 1050 CAAACGCAGGAGATACTATTTCCCACTTATGGTTGGTATAGGGTTGCTTGTACTTCAACA 1109
||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1059 CAAGCGCAGGAGATACTATTTCCCACTGATGGTTGGTATAGGGCTGCTTGTACTTCAACA 1118
Query 1110 ACTTGGTGGAATTAATGGTGTCCTATTCTATTCCAGTACAATATTTGAATCTGCAGGAGT 1169
|||||| ||||||||||||||| | |||||||| |||||||| |||||||||||||| ||
Sbjct 1119 ACTTGGAGGAATTAATGGTGTCTTGTTCTATTCGAGTACAATTTTTGAATCTGCAGGGGT 1178
Query 1170 TACATCGAGTAACGCAGCAACATTTGGGGTCGGGGCTATTCAGGTAGTAGCGACTGCAAT 1229
||||| ||||| | || |||||||| || || | | |||||||||| ||||||||| |
Sbjct 1179 GACATCAAGTAATGTGGCGACATTTGGAGTTGGCGTTGTTCAGGTAGTGGCGACTGCAGT 1238
Query 1230 ATCCACTTGGTTGGTGGACAAAGCAGGTCGTCGGCTTCTGCTTACT-ATCTCTTCGGTTG 1288
| | || ||||||||||| ||| |||||||||| |||||||| | | ||||| || | |
Sbjct 1239 AGCGACATGGTTGGTGGATAAATCAGGTCGTCGACTTCTGCTCA-TGATCTCATCCATCG 1297
Query 1289 GGATGACGATTAGCCTTGTAATTGTTGCAGCTGC-TTTCTATCTTAAGGAATTTGTGTCT 1347
| |||||||| ||||| || ||||| |||| ||| ||| |||||||||||||| | ||
Sbjct 1298 GAATGACGATAAGCCTCGTGATTGTAGCAGTTGCATTT-TATCTTAAGGAATTCATATCA 1356
Query 1348 CCTGATTC-AGACATGTACAG--TTGGCTGAGCATA-TTGTCAGTAGTTGGAGTTGTGGC 1403
|||||||| | ||||||||| || || ||||| || || |||||||||||||||||
Sbjct 1357 CCTGATTCCA-ACATGTACAACATT--CTAAGCATGGTT-TCCGTAGTTGGAGTTGTGGC 1412
Query 1404 AATGGTTGTCTT--T-TTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGA 1460
|||||| | || | ||||| | || |||||||||||| || ||||| |||||||||||
Sbjct 1413 TATGGTTAT-TTCATGTTCTC-TAGG-AATGGGACCAATTCCATGGCTGATTATGTCTGA 1469
Query 1461 GATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCCAAT-TGGT 1519
||| || || ||||| |||||||||||||| |||||||| |||||| | || || ||||
Sbjct 1470 GATTCTGCCAGTGAATATAAAGGGTTTAGCCGGAAGTATAGCAACTTT-GCTAAACTGGT 1528
Query 1520 TCTTTTCTTGGTT-GATCACCATGACAGCAAATTTGCTGTTAGCCTGGAGCAGTGGAGGA 1578
|| | || ||||| | | || ||||| |||||| |||| ||||| |||||||||||||||
Sbjct 1529 TCGTGTCATGGTTAG-TGACAATGACTGCAAATATGCTCTTAGCGTGGAGCAGTGGAGGA 1587
Query 1579 ACTTTCACTCTGTATGGATTGGTTTGTGCATTCACAGTGGTGTTCGTGACTCTATGGGTT 1638
||||||||||| || | |||||||||| |||||| ||||| || |||| ||| ||||||
Sbjct 1588 ACTTTCACTCTATACGCTTTGGTTTGTGGATTCACTGTGGTCTTTGTGAGTCTTTGGGTT 1647
Query 1639 CCTGAGACCAAAGGCAAAACTCTTGAAGA-ACTTCAATCCTTGTTCAGATGAACAAA 1694
|||||||| ||||||||||| |||||||| | ||||| | |||||||||||| ||||
Sbjct 1648 CCTGAGACTAAAGGCAAAACGCTTGAAGAGA-TTCAAGCTTTGTTCAGATGATCAAA 1703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73057089910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5