BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75230.2
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476667 jgi|Araly1|476667|fgenesh2_kg.2__1797__AT1G75230.1 1764 0.0
> Ahg476667 jgi|Araly1|476667|fgenesh2_kg.2__1797__AT1G75230.1
Length=1536
Score = 1764 bits (955), Expect = 0.0
Identities = 1171/1270 (92%), Gaps = 35/1270 (3%)
Strand=Plus/Plus
Query 1 GGCTAATTCTCCGATTAGG---TT--TTCGATTC-TCTTCGTCTTCGTCTCTGAAGCGAC 54
|||| |||||||||||||| || ||| ||| |||||||||||||||||||||||||
Sbjct 1 GGCTTATTCTCCGATTAGGTCTTTGATTCTCTTCGTCTTCGTCTTCGTCTCTGAAGCGAC 60
Query 55 CAAAAACCCTAATTCTATCAATTCGAAATCTTCAATTTCACATGGGTGAACATTCACCTT 114
|||||||||||||| || |||| |||||| | | ||||||||||||||||||||||||||
Sbjct 61 CAAAAACCCTAATTTTACCAATCCGAAAT-TCCGATTTCACATGGGTGAACATTCACCTT 119
Query 115 CTCAACCATCATCTCATACTCTTCCTCC-AAACCAACCGGAATCACCCAATCACGAAACC 173
|||||||||| ||||| |||| ||| || ||| ||||| ||||||||||||| |||||||
Sbjct 120 CTCAACCATCGTCTCAAACTCATCC-CCAAAATCAACCAGAATCACCCAATCCCGAAACC 178
Query 174 CCTAATCCAATTCCACCGGAAACCAACGATGACGACTCCGCCTCATCCGCCGGAGTTTCT 233
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 179 CCTAATCCAATTCCACCGGAAACTAACGATGATGACTCCGCCTCATCCGCCGGAGTTTCT 238
Query 234 GGCTCAATCGTCTCATCAACCACCATTGAAGCACCACAAGTCACTGAATTAGGCAATGTA 293
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 239 GGCTCAATCGTCTCATTAACCACCATTGAAGCACCACGAGTCACTGAATTAGGCAATGTA 298
Query 294 TCGTCTCCACCTACCAAGATCCCTCTCCGTCCTCGAAAAATCAGAAAACTTTCACCCGAC 353
|||||||||||| |||| ||||| |||||||||||||||||| | |||||||||||||||
Sbjct 299 TCGTCTCCACCTTCCAAAATCCCACTCCGTCCTCGAAAAATCCGGAAACTTTCACCCGAC 358
Query 354 GACGACGC-T----T--C--CGACGGATTCAATCCGGAGCATAACCTTTCTCAGATGACG 404
|| ||||| | | | ||||||||||||||||||||||||||||| | | ||||
Sbjct 359 GATGACGCTTCCGGTAACGGCGACGGATTCAATCCGGAGCATAACCTTT-T--GGCGACG 415
Query 405 ACGACGAAACCGGCAACGAAGAGTAAATTATCACAGTCACGCACTGTAACCGTGCCGAGA 464
|| | ||||||||| |||||||||||| |||||||||||| |||||||||||||||||
Sbjct 416 ACTTCAAAACCGGCAGTGAAGAGTAAATTGTCACAGTCACGCTCTGTAACCGTGCCGAGA 475
Query 465 ATCCAAGCAAGGTCTCTCACTTGTGAAGGCGAGCTTGAAGCAGCTCTTCACCATCTCCGA 524
||||| || |||||||| || ||||||||||||||||||||||| ||||| |||||||||
Sbjct 476 ATCCACGCGAGGTCTCTAACCTGTGAAGGCGAGCTTGAAGCAGCGCTTCAGCATCTCCGA 535
Query 525 AGTGTTGATCCTCTGCTCGCGTCTTTAATCGACATTCATCCACCACCAACGTTCGAGACT 584
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 536 AGTGTTGATCCTCTGCTCGCGTCGTTAATTGACATTCACCCACCACCAACGTTCGAGACT 595
Query 585 TTTCAGACTCCGTTCTTGGCGTTGATTCGAAGCATTCTTTATCAGCAATTAGCAGCTAAA 644
||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 596 TTTCATACCCCGTTCTTGGCTTTGATTCGAAGCATTCTTTATCAGCAGTTAGCAGCTAAA 655
Query 645 GCAGGTAATTCAATCTACACACGCTTCGTTGCCTTATGCGGCGGTGAAAACGGCGTCGTG 704
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GCAGGGAATTCAATCTACACACGCTTCGTTGCCTTATGCGGCGGTGAAAACGGCGTCGTT 715
Query 705 CCAGAGAATGTATTGCCTTTAACACCTCAACAGCTTCGTCAAATTGGTGTTTCCGGGCGT 764
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 716 CCAGAGAATGTATTGCCTTTAACACCTCAACAGCTTCGTCAAATCGGTGTTTCCGGGCGT 775
Query 765 AAAGCGAGTTACCTTCATGATCTTGCTAGGAAATATCAAAATGGGATCTTGTCGGATTCT 824
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AAAGCCAGTTACCTTCATGATCTTGCTAGGAAATATCAAAATGGGATCTTGTCGGATTCT 835
Query 825 GGAATAGTGAATATGGATGAGAAATCTTTGTTCACGATGTTAACAATGGTGAATGGGATT 884
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 836 GGAATAGTGAATATGGATGAGAAATCTTTGTTCACCATGTTAACAATGGTGAATGGGATT 895
Query 885 GGGTCATGGTCGGTCCATATGTTTATGATAAACTCTCTTCATAGACCTGATGTGTTACCA 944
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 896 GGGTCATGGTCCGTTCATATGTTTATGATAAACTCTCTTCATAGACCCGATGTGTTACCA 955
Query 945 GTTAATGATCTTGGTGTAAGGAAGGGTGTGCAGATGCTTAATGGTATGGAGGATTTGCCT 1004
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 956 GTTAATGATCTTGGTGTAAGGAAGGGTGTGCAGATGCTTAATGGCATGGAGGATTTGCCT 1015
Query 1005 CGTCCATCCAAAATGGAGCAGCTTTGCGAGAAATGGCGTCCGTATAGATCAGTAGCGTCT 1064
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CGTCCATCGAAAATGGAGCAGCTTTGCGAGAAATGGCGTCCGTATAGATCAGTAGCGTCG 1075
Query 1065 TGGTACTTGTGGCGGCTCATTGAATCTAAAAATACACCACCTAATGCTGCGGCTGCT-AC 1123
|||||| ||||||||||||||||||||||| ||||||||| ||||||||||||| | ||
Sbjct 1076 TGGTACATGTGGCGGCTCATTGAATCTAAAGGTACACCACCGAATGCTGCGGCTG-TGAC 1134
Query 1124 GGCCGGAGCTGCTCTTTCGTTTCCACAGTTGGAAGacattcagcaacaagaacaagaaca 1183
||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |||
Sbjct 1135 GGCTGGAGCTGCTCTTTCGTTTACACAGTTGGAAGACATTCAACAACAAGAA---GAA-- 1189
Query 1184 gcaacatcaacaacatcagcaacaacagcCGCAGCTTATGGACCCTCTTAATAATGTGTT 1243
| |||| | |||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1190 G-AACA--A-CAACATCA--A-CAACAGCCGCAGCTTATGGACCCTCTTAATAATGTGTT 1242
Query 1244 CAGTATCGGG 1253
||||||||||
Sbjct 1243 CAGTATCGGG 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53707245450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5