BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75240.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926904 jgi|Araly1|926904|scaffold_202465.1 1544 0.0
> Ahg926904 jgi|Araly1|926904|scaffold_202465.1
Length=971
Score = 1544 bits (836), Expect = 0.0
Identities = 932/975 (96%), Gaps = 19/975 (2%)
Strand=Plus/Plus
Query 409 ttaatctCCAAGaa-aaaaaaTGGATATGAGAAGCCATGAAATGATAGAGAGAAGAAGAG 467
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTAATCTCCAAGAAGACAAAATGGATATGAGAAGCCATGAAATGATAGAGAGAAGAAGAG 61
Query 468 AAGACAATGGCAACAACAATGGTGGTGTTGTTATTAGTAACATCATTAGTACTAATATTG 527
||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | | ||
Sbjct 62 AAGACAATGGCAACAACAATGGTGGTGGTGTTATTAGTAACATCATTAGCACT-A-A-TG 118
Query 528 ATGATAATTGCAATGGTAAT------AACAACAACACTCGTGTCTCTTGCAACTCTCAAA 581
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 119 ATGATAATTGCAATGGTAATAACAACAACAACAACACTCGTGTCGCTTGCAACTCTCAAA 178
Query 582 CCCTAGATCACCACCAATCCAAGTCTCCCTCTTCGTTTTCCATCTCCGCCGCAGCTAAAC 641
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 179 CCCTAGATCACCACCAATCCAAGTCTCCGTCTTCGTTTTCCATCTCCGCCGCAGCTAAAC 238
Query 642 CCACCGTAAGATACCGTGAGTGTCTAAAGAATCATGCGGCGAGCGTCGGCGGAAGTGTTC 701
|||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| |
Sbjct 239 CCACCGTAAGGTACCGTGAGTGTCTGAAGAATCACGCGGCCAGCGTCGGCGGAAGTGTAC 298
Query 702 ACGACGGATGCGGCGAGTTTATGCCGAGTGGTGAAGAAGGAACAATCGAAGCTCTCAGAT 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ACGACGGATGCGGCGAGTTTATGCCGAGTGGTGAAGAAGGAACAATCGAAGCTCTCAGAT 358
Query 762 GCGCTGCTTGTGATTGTCACCGTAATTTCCACCGGAAAGAAATGGACGGCGTTGGAAGCT 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GCGCTGCTTGTGATTGTCACCGTAATTTCCACCGGAAAGAAATGGACGGCGTTGGAAGCT 418
Query 822 CGGATTTGATCTCTCACCACCGTCATCACCACTACCACCATAACCAATACGGTGGAGGAG 881
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 419 CGGATTTGATCTCTCACCACCGTCATCACCACCACCACCATAACCAGTACGGTGGAGGAG 478
Query 882 GAGGGAGAAGACCTCCGCCGCCGAATATGATGCTTAACCCACTCATGCTTCCTCCGCCAC 941
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 G-G--AGAAGACCTCCGCCGCCGAATATGATGCTTAACCCACTCATGCTTCCTCCGCCGC 535
Query 942 CGAATTATCAGCCGATTCACCACCACAAGTATGGAATGAGTCCTCCCGGAGGAGGAGGAA 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CGAATTATCAGCCGATTCACCACCACAAGTATGGAATGAGTCCTCCCGGAGGAGGAGGAA 595
Query 1002 TGGTGACGCCGATGAGCGTTGCTTACGGCGGTGGAGGAGGAGGAG---CTGAGTCGTCTA 1058
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 596 TGGTGACGCCGATGAGCGTTGCTTACGGCGGAGGAGGAGGAGGAGGAGCTGAGTCGTCTA 655
Query 1059 GTGAAGATCTGAATCTGTACGGACAATCAAGCGGAGAAGGAGCTGGTGCGGCGGCGGGAC 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GTGAAGATCTGAATCTGTACGGACAATCAAGCGGAGAAGGAGCTGGTGCGGCGGCGGGAC 715
Query 1119 AAATGGCGTTTTCGATGTCGTCGTCTAAGAAAAGATTCAGGACAAAGTTCACGACGGATC 1178
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 716 AAATGGCGTTTTCGATGTCGTCGTCGAAGAAAAGATTCAGGACAAAGTTCACGACGGAGC 775
Query 1179 AGAAGGAGAGGATGATGGACTTTGCGGAGAAGCTAGGGTGGAGGATGAACAAGCAAGACG 1238
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 776 AGAAGGAGAGGATGATGGAGTTTGCGGAGAAGCTAGGGTGGAGGATGAACAAACAAGACG 835
Query 1239 AAGAAGAGCTTAAGAGATTCTGCGGCGAGATCGGAGTGAAGAGACAAGTCTTCAAAGTTT 1298
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 836 AAGAAGAGCTTAAAAGATTCTGCGGTGAGATCGGAGTTAAGAGACAAGTCTTCAAAGTTT 895
Query 1299 GGATGCATAACAACAAGAACAATGCTAAGAAACCACCAACACCAACAACTACTCTC-T-A 1356
||||||||||||||||||||||||| ||||||||| |||||||||||||| |||| | |
Sbjct 896 GGATGCATAACAACAAGAACAATGCCAAGAAACCAGCAACACCAACAACT-CTCTAATCA 954
Query 1357 ATCAGTGATCATATG 1371
|||||||||||||||
Sbjct 955 ATCAGTGATCATATG 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5