BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75250.1
Length=381
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476668 jgi|Araly1|476668|fgenesh2_kg.2__1798__AT1G75250.2 411 2e-114
> Ahg476668 jgi|Araly1|476668|fgenesh2_kg.2__1798__AT1G75250.2
Length=468
Score = 411 bits (222), Expect = 2e-114
Identities = 254/270 (94%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCAAACTCAAGAAGTTCAATCTCACCATGGACGTTTAGTCAAAACAAGATGTTC 60
||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||
Sbjct 33 ATGGCGTCAAACTCAAGAAGTTCAATCTCGTCATGGACCTTTAATCAGAACAAGATGTTC 92
Query 61 GAGAGGGCCTTGGCAGTTTACGACAAGGACACACCCGACCGATGGCACAATGTGGCAAAA 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 93 GAGAGGGCCTTGGCAGTTTACGACAAGGACACACCCGACCGTTGGCACAATGTGGCAAAA 152
Query 121 GCTGTCGGAGGGAAAACTGTAGAAGAAGTGAAGCGCCACTATGACATTCTCGTCGAGGAT 180
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 153 GCTGTCGGAGGGAAAACTGTAGAGGAAGTGAAACGTCACTATGACATTCTCGTCGAGGAT 212
Query 181 CTCATCAACATCGAGACTGGTCGTGTCCCTTTGCCCAATTACAAGACCTTCGAATCTAAC 240
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 CTTTTCAACATCGAAACTGGTCGTGTCCCTTTGCCCAATTACAAGACCTTCGAATCTAAC 272
Query 241 TCAAGAAGCATCAATGACTTTGACACAAGG 270
|||||| || |||| ||||||||||| |||
Sbjct 273 TCAAGAGGCGTCAACGACTTTGACACGAGG 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13621545273
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5