BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75260.1
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926906 jgi|Araly1|926906|scaffold_202467.1 1912 0.0
> Ahg926906 jgi|Araly1|926906|scaffold_202467.1
Length=1483
Score = 1912 bits (1035), Expect = 0.0
Identities = 1325/1461 (91%), Gaps = 36/1461 (2%)
Strand=Plus/Plus
Query 170 GCATCGCTCAGCCGTCGAAGTCAGAAACAAA-GCCCAAGGCGTCTCCGTCACTTTCTAGG 228
|||||||||||||||| ||| |||||| ||| | |||||| ||| ||||||||||||| |
Sbjct 40 GCATCGCTCAGCCGTCAAAGCCAGAAA-AAAGGTCCAAGGTGTCACCGTCACTTTCTAAG 98
Query 229 AGTAGAAGTAATGTTGCAGCCCTAGCTGCTTCTTCGTCCGCGTCTCAATTGCCTTCT-CT 287
|||||||| |||||||| |||||||| |||||||| |||||||||||||||||||| |
Sbjct 99 AGTAGAAGCAATGTTGCGGCCCTAGCAGCTTCTTCACCCGCGTCTCAATTGCCTTCTAGT 158
Query 288 CGGTGCAGCCACGCCAACTCGCCTGGCGAAACAGACTAACCAACAATCTGGTTCTCCATC 347
|| |||||||||||||| || |||| ||||||||||||||||||||||| |||||||||
Sbjct 159 -GGCGCAGCCACGCCAACCCGGCTGGTGAAACAGACTAACCAACAATCTGCTTCTCCATC 217
Query 348 AAAGAAACTGGATTCTCTGAGGATGGAGGAACAAAAGGTGGCGACAAAAGAGAAGCCACC 407
|||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||
Sbjct 218 AAAGAAACTGGATTCTCTGAGGATTGAGGAACAAAAGGTGACGACGAAAGAGAAGCCACA 277
Query 408 GGGAGAAACTGAAAAA-ATAGCTGAAGAGAATATCAGTCCTGTAAAAGAGAAACCTCCGA 466
|||||||||| ||||| |||||| |||||||||| ||| |||||||||||||| ||||
Sbjct 278 GGGAGAAACT-AAAAATGTAGCTGGCGAGAATATCAATCCGGTAAAAGAGAAACCACCGA 336
Query 467 TTGGAGCTCGTCCAGAAGAGCATTTAGAACAG-AAAGAAACAGAGGCAGTGCAAGAACAG 525
|| ||||||| ||||||||||||||||| | ||||||||||||||||| || ||||||
Sbjct 337 TT---GCTCGTCTAGAAGAGCATTTAGAAC-GAAAAGAAACAGAGGCAGTTCAGGAACAG 392
Query 526 GGGAGGAATACTGAAGCAGCGAGACTTGTGGTGCAAGAAAATAAGAAAGTCCTTCCTGAA 585
||| ||| || ||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 393 AGGAAGAAGACAGAAGCAGAGAGACTTGTGATGCAAGAAAATAAGAAAGTCCTTCCTGAA 452
Query 586 GGCAGTGGGAAGAAGTCAGCAGCAAATCA-GGGACAACAGAAGATAGAAGAAATCGAGAA 644
|||| |||| ||||||||||| || || | |||||||||||||| | |||||||||||||
Sbjct 453 GGCAATGGGGAGAAGTCAGCATCAGAT-ATGGGACAACAGAAGAGAAAAGAAATCGAGAA 511
Query 645 AATTGCGTTACAAGAAAGGAAGAAAGTTCTTCATGACGACGGTGTACAGAAGTTAGAAGC 704
| ||| | |||||||||||||||||||||||||||| | | ||| | |||||| ||| |
Sbjct 512 ACTTGTGCTACAAGAAAGGAAGAAAGTTCTTCATGAAGGCAGTGGAGAGAAGTCGGAAAC 571
Query 705 AGATCAGGGACAACAGAAGAGCAAAGAAACT-GAGAAACTTGCATTACAAGAAACGAAGA 763
||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct 572 AGATCAGGGACAACAGAAGAGCAAAGAAA-TCGAGAAACTTGCATCACAAGAAACGAAGA 630
Query 764 GATCACTTCAGGCGGTAGGTAGAGAAGATGCAACGCGAAGCAAAACCACACGACATATGG 823
|| | ||||||| |||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 631 GACCGCTTCAGGTGGTAGGCAGAGAAGATACAACGCGAAGCAAAACCACACGACATATTG 690
Query 824 CAGCAGCATCAGAAACCACGAGAGGACCGAGAGATCTACCGGAGAAAAAGACAGAAACGC 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 CAGCAGCATCAGAAACCACGAGAGGACCGAGAGATCTACCGGAGAAAAAGACAGAAACGC 750
Query 884 AAAACAGAACAGAGATTC-CTACCGATGACAATCATCAGAAAACCAAAGGCGCATTAACG 942
||||||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 751 AAAACAGAACAAAGATTCAC-ACCGATGACAATCATCAGAAACCCAAAGGCGCATTAACG 809
Query 943 AGTAATCTTGGAAATCCGAGAGTTACGAATAGAGAAGGATCATC-T-T-CAATGAGCAGA 999
|||||||||||||||||||||||||||| | || | |||||||| | | |||||||||||
Sbjct 810 AGTAATCTTGGAAATCCGAGAGTTACGACTGGACAGGGATCATCATCTTCAATGAGCAGA 869
Query 1000 AAGATTAAAGAAGACATCAGAGATGGAATCAGTAAGCTAACTTGGGGAAAAAGCAACGGT 1059
||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 870 AAGATCAAAGAAGACATCAGAGATGGAATCAGTAAGCTTACTTGGGGAAAAGGCAACGGC 929
Query 1060 GATGATAAATCAGTGAGCGTCTACACTCTCACTGGAGAAAACAAAGGAGCCACAATGGGA 1119
||||| ||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 930 GATGAGAAATCCGTGAACGTCTATACTCTAACTGGAGAAAACAAAGGAGCCACAATGGGA 989
Query 1120 ATAGGTTCTGAGAAAGACAAGAAAGACGGTGAGGTTCATATTCGCCGTGGCTACAGAAGT 1179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 ATAGGTTCTGAGAAAGAGAAGAAAGACGGTGAGGTTCATATTCGCCGTGGCTACAGAAGT 1049
Query 1180 AACCCAGACGAGAGCTCTAACACCACAGCCACAGAAACCGAAAACCCTAAAGACGACGAA 1239
||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1050 AACCCAGACGAGAGCCCTAACACCACAACCATGGAAACCGAAAACCCTAAAGACGACGAA 1109
Query 1240 GCAGAGGAAGAAGCGAGTTTTACGGCATACATAAACGGAAACACTCAAGGGATAAACAAT 1299
||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 1110 GCAGAGGAAGAAGCGAGGTTGAAGGCATACATAAACGGAAACACTCAAGGGATAAACAAT 1169
Query 1300 TCAATTGTAGTCGAGAGTTCAGTAAGCGAGAATGATCCAGGAGTTCATATGAGTTTTAAG 1359
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1170 TCAATTGTAGTCGAGAGTTCAGTAAGTGAGAATGATCCAGGAGTTCATATGAGTTTAAAA 1229
Query 1360 TTTGAAATATTGAAGAAGGAAGTTATATATCCGCCAGAGAATGTGGAGGAG-A-A-GAAA 1416
|||||||||| ||||||||||||||| ||||||||||||||||||||||| | | ||||
Sbjct 1230 TTTGAAATATCAAAGAAGGAAGTTATAAATCCGCCAGAGAATGTGGAGGAGGAGAAGAAA 1289
Query 1417 CCGGAGACGGTGACCGTAACGAAGAAGTTAAAGAATGAGCCGAGAGTAAGGAGGAGATGC 1476
|||||||||||||| | ||| |||| || |||||| ||||||||||||||||||
Sbjct 1290 CCGGAGACGGTGACAG---CGACGAAG--AA----TGAGCCAAGAGTAAGGAGGAGATGC 1340
Query 1477 TTGAGAGGGTTACTTGCAGAGTCGAGTGAGTCGGAGCCAGATAATCCCTTGAAGCCACGG 1536
||||||||||||||||| |||||||||| |||||| || |||||||||||||||||||||
Sbjct 1341 TTGAGAGGGTTACTTGCGGAGTCGAGTGGGTCGGATCCGGATAATCCCTTGAAGCCACGG 1400
Query 1537 AGACATGGTTGCCGGTTTACTTGTAAAGATAAAGATATAGAGAACACTT-AAAA-ATCAT 1594
||||||||||||||||||||||||||||| |||||||| ||||| |||| |||| || ||
Sbjct 1401 AGACATGGTTGCCGGTTTACTTGTAAAGACAAAGATATCGAGAAAACTTCAAAATAT-AT 1459
Query 1595 GTAAATTGTATGAAATT-TAT 1614
||||||| ||||||||| |||
Sbjct 1460 GTAAATTTTATGAAATTCTAT 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61211023715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5