BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G75261.1

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926907 jgi|Araly1|926907|scaffold_202468.1                        479    6e-135


> Ahg926907 jgi|Araly1|926907|scaffold_202468.1
Length=739

 Score =  479 bits (259),  Expect = 6e-135
 Identities = 331/363 (91%), Gaps = 15/363 (4%)
 Strand=Plus/Plus

Query  13   AACAAAGAAGAAGACATTGCTGCATACACCATGAGAGC----CAT--T--GAGAACTCTC  64
            ||||||||||||||||||||||||||||||||||||||     ||  |  ||||||||||
Sbjct  357  AACAAAGAAGAAGACATTGCTGCATACACCATGAGAGCTATTGATGATCCGAGAACTCTC  416

Query  65   AACAAGACTCTCTACATCAATCCTCCAGAGAACACTGTTTCGCAGAACGACATCATCGAA  124
            |||||||||||||||| |||||||||| |||||| ||||||||| ||||| ||| ||| |
Sbjct  417  AACAAGACTCTCTACACCAATCCTCCAAAGAACATTGTTTCGCACAACGATATCGTCGCA  476

Query  125  TTGTGGGAGAGCAAGGTTGGTAAAAATCTGGAGAAGACTTACGTTTCATAGGAGA-AACT  183
            ||||||||||||||| ||||||||| |||| ||||||||||||||||| |||| | ||||
Sbjct  477  TTGTGGGAGAGCAAGATTGGTAAAACTCTGAAGAAGACTTACGTTTCAGAGGA-ACAACT  535

Query  184  TCTCAAGAAAAT--C-GAGTCTCCACATCCACTTGATCTTCTGTTGGCTTTAAATCATGC  240
            ||||||||||||  | ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  536  TCTCAAGAAAATCCCAGAGTCTCCACATCCACTTGATCTTCTGTTGGCTTTGAATCATGC  595

Query  241  CAT-TTTTGTGAAAGGAGATCAAACCTATTTTACAGTAGAGCCTTACTTTGAAGTGGAAG  299
            ||| |||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||
Sbjct  596  CATATTTT-TGAAAGGAGATCAAACCTATTTTACAATAGAGCCTTCCTTTGGAGTGGAAG  654

Query  300  CTTCTCAGCTTTATCCAGATATCAAGTACACAAGCGTCGATGAGTAACTCAGCCAGTTTG  359
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  655  CTTCTCAGCTTTATCCAGATATCAAGTACACAAGCGTCGATGAGTATCTCAGCCAGTTTG  714

Query  360  TCT  362
            |||
Sbjct  715  TCT  717



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12972900260


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5