BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75270.1
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476670 jgi|Araly1|476670|fgenesh2_kg.2__1800__AT1G75270.1 1190 0.0
> Ahg476670 jgi|Araly1|476670|fgenesh2_kg.2__1800__AT1G75270.1
Length=851
Score = 1190 bits (644), Expect = 0.0
Identities = 725/764 (95%), Gaps = 6/764 (1%)
Strand=Plus/Plus
Query 103 AAGAAAGATCGATGGCTCTAGATATCTGCGTGAAGGTTGCCGTCGGTGCTCCTGATGTTC 162
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 31 AAGAAAGATCGATGGCTCTCGATATCTGCGTCAAGGTTGCCGTCGGTGCTCCTGATGTTC 90
Query 163 TCGGCGACTGTCCGTTTAGCCAACGTGTTCTTCTGACACTTGAGGAGAAGAAGCTTCCCT 222
|||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 91 TCGGAGATTGTCCGTTTAGCCAACGTGTTCTTCTGACCCTTGAGGAGAAGAAGCTTCCTT 150
Query 223 ACAAGACCCATCTGATTAACGTCTCCGACAAACCCCAATGGTTCTTAGACATTAGTCCAG 282
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 151 ACAAGACCCATCTGATTAACGTCTCCGACAAACCCCAGTGGTTCTTAGACATTAGTCCGG 210
Query 283 AGGGGAAAGTTCCGGTGGTGAAGCTTGATGGCAAATGGGTGGCTGATTCTGACGTAATTG 342
||||||||||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct 211 AGGGGAAAGTTCCGGTGGTGAAGCTTGATGGCAAATGGGTGGCTGATTCAGATGTTATCG 270
Query 343 TTGGACTTCTTGAAGAGAAATATCCAGAGCCTTCTCTCAAGACTCCTCCTGAATTTGCTT 402
||||||||||||| || |||||| ||||||||||||||||||| ||||||||||| || |
Sbjct 271 TTGGACTTCTTGAGGATAAATATGCAGAGCCTTCTCTCAAGACACCTCCTGAATTCGCCT 330
Query 403 CTGTAGGATCCAAAATCTTTGGTGCTTTTGTGACTTTCTTGAAGAGCAAAGACGCTAATG 462
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 CTGTGGGATCCAAAATCTTTGGTGCTTTTGTGACTTTCTTGAAGAGCAAAGACGCTAATG 390
Query 463 ACGGATCCGAGAAGGCTTTGGTTGATGAGTTAGAAGCGTTGGAGAATCACTTGAAGACAC 522
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 ACGGATCCGAGAAGGCGTTGGTTGATGAGTTAGAAGCGTTGGAGAATCACTTGAAGACAC 450
Query 523 ATTCTGGTCCTTTTGTAGCTGGAGAG-AAGATTACTGCAGTGGATTTGAGTTTAGCACCA 581
|||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||
Sbjct 451 ATTCTGGTCCTTTTGTAGCTGGAGAGAAAG-TTACTGCTGTGGATCTGAGTTTAGCACCA 509
Query 582 AAGCTTTACCATCTTGAGGTTGCTCTTGGTCATTACAAGAACTGGTCTGTCCCTGAGAGC 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 AAGCTTTACCATCTTGAGGTTGCTCTTGGTCATTACAAGAACTGGTCTGTCCCTGAGAGC 569
Query 642 TTGACCAGTGTTCGTAACTACGCCAAGGCTTTGTTCTCTAGGGAGTCGTTTGAGAACACC 701
||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 570 TTGACCAATGTTCGTAACTACGCCAAGGCTTTGTTCTCTAGAGAGTCGTTCGAGAAAACC 629
Query 702 AAGGCTAAGAAAGAGATTGTGGTTGCGGGTTGGGAATCGAAGGTGAATGCGTGATGTGGA 761
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 630 AAAGCTAAGAAAGAGATTGTGGTCGCGGGTTGGGAATCGAAGGTGAACGCGTGATGTGGA 689
Query 762 TCCATGCTTCTCTAGTTAATGTTGCTTTAGAACTATTCTTCACTGAATAAT-AAGAATGC 820
||||||||||||||||||||||||||| ||||||||||||||| ||||||| || |||||
Sbjct 690 TCCATGCTTCTCTAGTTAATGTTGCTTAAGAACTATTCTTCACAGAATAATGAA-AATGC 748
Query 821 ACGAGTATGTG--TGTGTTCTTGTTTTTGTTAGAGTTGGTTATC 862
|||| ||| || |||||||||||||||||||||||||||||||
Sbjct 749 ACGAATATATGCGTGTGTTCTTGTTTTTGTTAGAGTTGGTTATC 792
Score = 60.2 bits (32), Expect = 3e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 21 TTTGCCTATTTCATTCATATTTTGCTTTTAAA 52
||||||||||||||||||||||||||||||||
Sbjct 1 TTTGCCTATTTCATTCATATTTTGCTTTTAAA 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34691854470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5