BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75280.1
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476671 jgi|Araly1|476671|fgenesh2_kg.2__1801__AT1G75280.1 1696 0.0
Ahg476672 jgi|Araly1|476672|fgenesh2_kg.2__1802__AT1G75290.1 1188 0.0
Ahg316461 jgi|Araly1|316461|fgenesh1_pm.C_scaffold_2001494 449 2e-125
Ahg926907 jgi|Araly1|926907|scaffold_202468.1 102 6e-21
> Ahg476671 jgi|Araly1|476671|fgenesh2_kg.2__1801__AT1G75280.1
Length=1197
Score = 1696 bits (918), Expect = 0.0
Identities = 1094/1177 (93%), Gaps = 19/1177 (2%)
Strand=Plus/Plus
Query 67 AAACATGGCGACGGAGAAAAGCAAGATTCTGGTGATCGGAGGAACTGGTTACATCGGGAA 126
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 22 AAACATGGCTTCGGAGAAAAGCAAGATTCTGGTGATCGGCGGAACTGGTTACATCGGAAA 81
Query 127 ATTCCTAGTAGAAGCGAGCGCCAAAGCTGGCCACTCCACATTCGCTCTCGTTAGAGAAGC 186
|||| | ||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 82 ATTCATTGTAGAAGCGAGCGCCAAAGCTGGCCACACCACATTCGCTCTGGTTAGAGAAGC 141
Query 187 AACTCTATCCGATCCTGTCAAGGGCAAAACCGTCCAGAGTTTCAAAGATCTCGGCGTCAC 246
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 AACTCTCTCCGATCCCGTCAAGGGCAAAACCGTCCAGAGTTTCAAAGATCTCGGCGTCAC 201
Query 247 AATACTACACGGAGATTTGAATGATCACGAGAGCTTAGTGAAGGCTATTAAACAGGTTGA 306
|||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||
Sbjct 202 AATACTACACGGAGATTTGAATGATCACGAAAGCTTAGTAAAGGCCATTAAACAGGTCGA 261
Query 307 TGTGGTGATATCTACCGTTGGGAGCATGCAAATCTTGGATCAAACCAAGATCATTTCCGC 366
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 262 TGTGGTGATATCGACCGTTGGGAGCTTGCAAATCTTGGATCAAACCAAGATCATTTCCGC 321
Query 367 CATCAAAGAAGCCGGTAATGTCAAGAGATTCTTGCCGTCTGAGTTTGGGGTGGATGTGGA 426
||| |||||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 322 CATTAAAGAAGCTGGTAACGTCAAGAGATTCTTGCCGTCTGAGTTTGGGGCGGACGTGGA 381
Query 427 TAGGACGAGTGCGGTTGAGCCAGCTAAATCGGCTTTTGCAGGGAAGATACAGATCAGGAG 486
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 382 CAGGACAAGTGCGGTTGAGCCAGCGAAATCGGCTTTTGCAGGGAAGATACAGATCAGGAG 441
Query 487 AACCATCGAAGCGGAAGGAATACCATACACTTACGCTGTTACCGGTTGCTTTGGTGGTTA 546
| || | ||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct 442 AGCCGTTGAAGCGGAAGGAATACCATACACGTACGCTGTCACCGGTTGCTTTGCCGGTTA 501
Query 547 CTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCTAGAGACAAAGT 606
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 CTACTTGCCTACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCTAGAGACAAAGT 561
Query 607 CACCATTCTTGGCGATGGAAATGCCAAAGCTGTGATCAACAAAGAGGAAGATATTGCTGC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 CACCATTCTTGGCGATGGAAATGCCAAAGCTGTGATCAACAAAGAGGAAGATATTGCTGC 621
Query 667 TTACACGATCAAGGCGGTGGATGATCCTAGGACTCTGAACAAAATCCTATACATTAAGCC 726
||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||
Sbjct 622 TTACACGATCAAGGCTGTGGATGACCCTAGGACTCTGAACAAAATTCTCTACATTAAGCC 681
Query 727 TTCTAACAACACTTTATCGATGAACGAAATAGTCACCTTGTGGGAGAAAAAGATTGGCAA 786
| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 682 TCCTAACAATACTTTATCTATGAACGAAATTGTCACCTTGTGGGAGAAAAAGATCGGCAA 741
Query 787 GTCTCTTGAGAAGACTCACCTCCCAGAGGAACAACTACTTAAAAGCATCCAAGAGTCTCC 846
||||||||||||||||||| | ||||| |||||| |||||||||||||||||||||||||
Sbjct 742 GTCTCTTGAGAAGACTCACATTCCAGACGAACAAATACTTAAAAGCATCCAAGAGTCTCC 801
Query 847 GATTCCCATCAATGTTGTTCTGTCGATAAACCACGCGGTGTTTGTGAATGGAGAT-A--C 903
| |||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 802 GGTTCCCATCAATGTTGTTCTGTCGATAAACCACGCGGTGTTTGTGAAAGGAGATCAGAC 861
Query 904 CAATATCAGTATAGAGCCTTCCTTTGGTGTGGAAGCCTCTGAGCTTTACCCTGATGTCAA 963
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 CAATTTCACTATAGAGCCTTCCTTTGGTGTGGAAGCCTCTGAGCTTTACCCTGATGTCAA 921
Query 964 GTACACAAGTGTTGACGAGTATCTCAGTTATTTCGCTTGATGAACTTCATTATAA-ACGT 1022
|||||| ||||||||||||||||||||||| |||| ||||| || ||||| | || ||||
Sbjct 922 GTACACGAGTGTTGACGAGTATCTCAGTTACTTCGTTTGATAAATTTCATAA-AACACGT 980
Query 1023 AATTTACCACCATGACGCGCTAGTTTCATGTTCTGTAT--CAATAAAAGAATGGTTCTTG 1080
|||||||||||||||||| |||| |||||||| ||||| |||||||||| |||| |||
Sbjct 981 AATTTACCACCATGACGCCCTAGCTTCATGTT-TGTATTTCAATAAAAGACTGGTGCTTC 1039
Query 1081 TAATGGTGAAtgtgtgtgt--gt--at--gtgtgACTAATCAGTAATCACAGTGCTTTAC 1134
||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1040 TAATGGTGAATGTGTGTGTTAGTGTATTTGTGTGACTAATCAGTAATCACAGTGCTTTAC 1099
Query 1135 CTCTGTTTCCGAGCTTCCCAAGAAATATGAATTAGTAATATATAATTCATACCTATA-GT 1193
|||||||||||| ||||||||| | ||||||||||||||||||||||||||||| || ||
Sbjct 1100 CTCTGTTTCCGATCTTCCCAAGGATTATGAATTAGTAATATATAATTCATACCTTTAAGT 1159
Query 1194 CTATACAT----GATTATCAATATGTTAGGTACCTAA 1226
|||||||| |||||||||||||||||||||||||
Sbjct 1160 CTATACATACATGATTATCAATATGTTAGGTACCTAA 1196
> Ahg476672 jgi|Araly1|476672|fgenesh2_kg.2__1802__AT1G75290.1
Length=1113
Score = 1188 bits (643), Expect = 0.0
Identities = 878/990 (89%), Gaps = 22/990 (2%)
Strand=Plus/Plus
Query 51 ATCATCGTTTGAAA-CTAAACATGGCGACGGAGAAAAGCAAGATTCTGGTGATCGGAGGA 109
|||| ||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 35 ATCA-CGTTTCAAATCTAATCATGGCGTCGGAGAAAAGCAAGATTCTGGTGATCGGAGGA 93
Query 110 ACTGGTTACATCGGGAAATTCCTAGTAGAAGCGAGCGCCAAAGCTGGCCACTCCACATTC 169
|||||| ||||||| ||| || || |||||||||||| ||||| || ||||||||| |
Sbjct 94 ACTGGTCACATCGGTAAACTCATAATAGAAGCGAGCGTGAAAGCCGGACACTCCACACTG 153
Query 170 GCTCTCGTTAGAGAAGCAACTCTATCCGATCCT-GTCAAGGGCAAAACCGTCCAGAGTTT 228
||||| ||||||||||| || | |||||| || | |||||||||||||||||||| |||
Sbjct 154 GCTCTGGTTAGAGAAGCCTCTGTCTCCGAT-CTCGACAAGGGCAAAACCGTCCAGAATTT 212
Query 229 CAAAGATCTCGGCGTCACAATACTACACGGAGATTTGAATGATCACGAGAGCTTAGTGAA 288
||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 213 TAAAGATCTCGGCGTCACAATACTTCACGGGGATTTGAACGATCACGAGAGCTTAGTGAA 272
Query 289 GGCTATTAAACAGGTTGATGTGGTGATATCTACCGTTGGGAGCATGCAAATCTTGGATCA 348
||| |||||||| | |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 273 GGCCATTAAACAAGCCGATGTGGTTATATCAACCGTTGGGAGCATGCAAATCTTGGATCA 332
Query 349 AACCAAGATCATTTCCGCCATCAAAGAAGCCGGTAATGTCAAGAGATTCTTGCCGTCTGA 408
||||||||||||||| || || |||||||||||||| |||||||||||||| ||||||||
Sbjct 333 AACCAAGATCATTTCAGCTATTAAAGAAGCCGGTAACGTCAAGAGATTCTTTCCGTCTGA 392
Query 409 GTTTGGGGTGGATGTGGATAGGACGAGTGCGGTTGAGCCAGCTAAATCGGCTTTTGCAGG 468
||||||| |||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 393 GTTTGGGATGGATGTGGACAGGACGAGTGCGGTTGAGCCGGCGAAATCGGCTTTTGCAGG 452
Query 469 GAAGA-TACAGATCAGGAGAACCATCGAAGCGGAAGGAATACCATACACTTACGCT-GTT 526
||| | |||||| |||||||||| | ||||| ||||||||||||||||||||| || |||
Sbjct 453 GAA-ACTACAGACCAGGAGAACCGTTGAAGCCGAAGGAATACCATACACTTAC-CTTGTT 510
Query 527 ACCGGTTGCTTTGGTGGTTACTACTTGCCAACATTGGTTCAGTTCGAGCCTGGTCTCACT 586
||| || ||||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 511 ACCAATTACTTTGCTGGTTACTACTTGCCCACATTGGTTCAGTTAGAGCCTGGTCTCACT 570
Query 587 TCTCCTCCTAGAGACAAAGTCACCAT-TCTTGGCGATGGAAATGCCAAAGCTGTGATCAA 645
|||||||||| ||| ||||||| || | |||| || |||||||||||||||||||||||
Sbjct 571 TCTCCTCCTAAAGATAAAGTCAAAATAT-TTGGAGACGGAAATGCCAAAGCTGTGATCAA 629
Query 646 CAAAGAGGAAGATATTGCTGCTTACACGATCAAGGCGGTGGATGATCCTAGGACTCTGAA 705
||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct 630 CAAGGAGGAAGATATTGCTGCTTACACTATCAAAGCGGTGGATGATCCGAGGACTCTAAA 689
Query 706 CAAAATCCTATACATTAAG-CCTTCTAACAACACTTTATCGATGAACGAAATAGTCACCT 764
|||| ||| ||||||| | ||| |||||||||||||||| |||||||||||||||||||
Sbjct 690 TAAAACCCTCTACATTA-GTCCTCCTAACAACACTTTATCAATGAACGAAATAGTCACCT 748
Query 765 TGTGGGAGAAAAAGATTGGCAAGTCTCTTGAGAAGAC-TCACCTCCCAGAGGAACAACTA 823
|||||||||||||||| ||||||||||||||||||| | || | ||||||||||| |
Sbjct 749 TGTGGGAGAAAAAGATCGGCAAGTCTCTTGAGAAGATAT-ACATGTCAGAGGAACAAAT- 806
Query 824 CTT-AAAAGCATCCAAGAGTCTCCGATTCCCATCAATGTTGTTCTGTCGATAAACCACGC 882
||| ||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||
Sbjct 807 CTTTAAAAGCATCCAAGAGTCTCCGGTTCCCTTCAACGTTCTTCTGTCGATAAACCACGC 866
Query 883 GGTGTTTGTGAATGGAGAT-A--CCAATATCAGTATAGAGCCTTCCTTTGGTGTGGAAGC 939
||||||||||| || ||| | ||||| |||||||||||||||| || ||| | |||||
Sbjct 867 AGTGTTTGTGAAAGGTGATCAAACCAATTTCAGTATAGAGCCTTCGTTCGGTTTTGAAGC 926
Query 940 CTCTGAGCTTTACCCTGATGTCAAGTACACAAGTGTTGACGAGTATCTCAGTTATTTCGC 999
||||||||||||||||||| |||||||||| ||| |||| ||||||||||||||||||||
Sbjct 927 CTCTGAGCTTTACCCTGATATCAAGTACACGAGTATTGAGGAGTATCTCAGTTATTTCGC 986
Query 1000 TTGATGAACTTCATTATAA-ACGTAA-TTT 1027
|| ||||||||||||| || || ||| |||
Sbjct 987 TTAATGAACTTCATTA-AACACCTAACTTT 1015
Score = 62.1 bits (33), Expect = 1e-08
Identities = 52/60 (87%), Gaps = 5/60 (8%)
Strand=Plus/Plus
Query 1079 TGTAATGGTGAAtgtgtgtgtgtatgtgtgACTAATCAGTAATCACAGTGCTTTACCTCT 1138
|||||||||||| | |||| |||| |||||||||||||||||||||||||||||||
Sbjct 1036 TGTAATGGTGAA---GAATGTG--TGTGAGACTAATCAGTAATCACAGTGCTTTACCTCT 1090
> Ahg316461 jgi|Araly1|316461|fgenesh1_pm.C_scaffold_2001494
Length=846
Score = 449 bits (243), Expect = 2e-125
Identities = 331/373 (89%), Gaps = 8/373 (2%)
Strand=Plus/Plus
Query 71 ATGGCGACGGAGAAAAGCAAGATTCTGGTGATCGGAGGAACTGGTTACATCGGGA-AATT 129
||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct 1 ATGGCGACGGAGAAATGCAAGATTCTGGTGATCGGAGGTACTGGTTACAT-GGGAGAATT 59
Query 130 CCTAGTAGAAGCGAGCGCCAAAGCTGGCCACTCC-ACATTCGCTCTCGTTAGAGAAGCAA 188
| | || |||| |||||| |||||| | || || ||||||||||| || ||||||||
Sbjct 60 CATCGTTGAAGGGAGCGCGAAAGCTAGTAAC-CCAACATTCGCTCTTGTCCGAGAAGCAT 118
Query 189 CTCTATCCGATCCTGTCAAG-GGCAAAACCGTCCAGAGTTTCAAAGATCTCGGCGTCACA 247
|||| ||||||||||||||| || |||||| |||||||||||||||||||||| ||||||
Sbjct 119 CTCTCTCCGATCCTGTCAAGAGG-AAAACCATCCAGAGTTTCAAAGATCTCGGGGTCACA 177
Query 248 ATACTACACGGAGATTTGAATGATCACGAGAGCTTAGTGAAGGCTATTAAACAGGTTGAT 307
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 178 ATACTACACGGAGATTTGAATGATCATGAGAGCTTAGTGAAGGCCATTAAACAGGTTGAT 237
Query 308 GTGGTGATATCTACCGTTGGG-AGCATGCAAATCTTGGATCAAACCAAGATCATTTCCGC 366
||||||||||| ||| | ||| | || |||||||||||||||||||||||||||||||||
Sbjct 238 GTGGTGATATCAACCATCGGGCA-CAAGCAAATCTTGGATCAAACCAAGATCATTTCCGC 296
Query 367 CATCAAAGAAGCCGGTAATGTCAAGAGATTCTTGCCGTCTGAGTTTGGGGTGGATGTGGA 426
||| |||||||||||||| |||| ||||||||||||| ||||||||||| || |||||
Sbjct 297 CATTAAAGAAGCCGGTAACGTCAGGAGATTCTTGCCGGCTGAGTTTGGGACAGACGTGGA 356
Query 427 TAGGACGAGTGCG 439
|| || ||||||
Sbjct 357 GAGAACAAGTGCG 369
Score = 309 bits (167), Expect = 3e-83
Identities = 227/255 (89%), Gaps = 8/255 (3%)
Strand=Plus/Plus
Query 589 TCCTCCTAGAGACAAAGTCACCATTCTT-GGCGATGGAAATGCCAAAG-CTGTGATCAAC 646
||||||||||||||||||||||| | || ||||||||||||||||||| | | | ||
Sbjct 501 TCCTCCTAGAGACAAAGTCACCA-TATTAGGCGATGGAAATGCCAAAGAATCT-TTTAAG 558
Query 647 AAAGAGGAAGATATTGCTGCTTACACGATCAAGG-CGGTGGATGATCCTAGGACTCTGAA 705
||||||||||||||||||||||||||||||| || | ||||||||||| |||||||||||
Sbjct 559 AAAGAGGAAGATATTGCTGCTTACACGATCA-GGACAGTGGATGATCCAAGGACTCTGAA 617
Query 706 CAAAATCCTATACATTAAG-CCTTCTAACAACACTTTATCGATGAACGAAATAGTCACCT 764
||||| ||| ||||||| | ||| |||||||||||||||||||||||||||| |||||||
Sbjct 618 CAAAACCCTCTACATTA-GTCCTCCTAACAACACTTTATCGATGAACGAAATGGTCACCT 676
Query 765 TGTGGGAGAAAAAGATTGGCAAGTCTCTTGAGAAGACTCACCTCCCAGAGGAACAACTAC 824
|||||||||||||||| ||||||||| |||||||||||||| | |||| |||||| | |
Sbjct 677 TGTGGGAGAAAAAGATCGGCAAGTCTGTTGAGAAGACTCACATATCAGAAGAACAAATCC 736
Query 825 TTAAAAGCATCCAAG 839
|||||||||||||||
Sbjct 737 TTAAAAGCATCCAAG 751
Score = 99.0 bits (53), Expect = 8e-20
Identities = 61/65 (94%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 927 TTGGTGTGGAAGCCTCTGAGCTTTACCCTGATGTCAAGTACACAAGTGTTGACGAGTATC 986
|||||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 770 TTGGTGAGGAAGCCTCTGAGCTTTACCCTGATGTCAAGTACACGAGTATTGATGAGTATC 829
Query 987 TCAGT 991
|||||
Sbjct 830 TCAGT 834
> Ahg926907 jgi|Araly1|926907|scaffold_202468.1
Length=739
Score = 102 bits (55), Expect = 6e-21
Identities = 91/108 (84%), Gaps = 4/108 (4%)
Strand=Plus/Plus
Query 96 TGGTGATCGGAGGAACTGGTTACATCGGGAAATTCCTAGTAGAAGCG-AGCGCCAAAGCT 154
|||||||||||||||||||||||||||| ||||| | ||||||| | ||||||||| |
Sbjct 70 TGGTGATCGGAGGAACTGGTTACATCGGAAAATTTATCGTAGAAG-GTAGCGCCAAATCC 128
Query 155 GGCCACTCCA-CATTCGCTCTCGTTAGAGAAGCAACTCTATCCGATCC 201
|||||| | | ||||||| ||||| |||||||| | || ||||||||
Sbjct 129 GGCCAC-CAAACATTCGCCCTCGTAAGAGAAGCCTCGCTTTCCGATCC 175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47348662914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5