BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75290.1
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476672 jgi|Araly1|476672|fgenesh2_kg.2__1802__AT1G75290.1 1474 0.0
Ahg476671 jgi|Araly1|476671|fgenesh2_kg.2__1801__AT1G75280.1 1153 0.0
Ahg316461 jgi|Araly1|316461|fgenesh1_pm.C_scaffold_2001494 361 7e-99
> Ahg476672 jgi|Araly1|476672|fgenesh2_kg.2__1802__AT1G75290.1
Length=1113
Score = 1474 bits (798), Expect = 0.0
Identities = 908/961 (94%), Gaps = 8/961 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCAGAGAAAAGCAAGATTCTGGTGATCGGAGGGACTGGTCACATCGGAAAACTC 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 55 ATGGCGTCGGAGAAAAGCAAGATTCTGGTGATCGGAGGAACTGGTCACATCGGTAAACTC 114
Query 61 ATTATAGAAGCGAGCGTGAAAGCCGGACACTCCACACTGGCTCTCGTTAGAGAAGCCTC- 119
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 115 ATAATAGAAGCGAGCGTGAAAGCCGGACACTCCACACTGGCTCTGGTTAGAGAAGCCTCT 174
Query 120 GCTCTCCGATCCCAACAAGGGCAAAACCGTCCAGAATTTCAAAGATTTTGGCGTCACATT 179
| ||||||||| | ||||||||||||||||||||||||| |||||| | ||||||||| |
Sbjct 175 G-TCTCCGATCTCGACAAGGGCAAAACCGTCCAGAATTTTAAAGATCTCGGCGTCACAAT 233
Query 180 ACTTCACGGGGATTTGAACGATCATGAGAGCTTAGTGAAGGCCATTAAACAGGCCGATGT 239
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 234 ACTTCACGGGGATTTGAACGATCACGAGAGCTTAGTGAAGGCCATTAAACAAGCCGATGT 293
Query 240 GGTTATATCAACCGTTGGGAGCATGCAAATCTTGGATCAAACCAAGATCATTTCAGCTAT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GGTTATATCAACCGTTGGGAGCATGCAAATCTTGGATCAAACCAAGATCATTTCAGCTAT 353
Query 300 TAAAGAAGCCGGTAACGTCAAGAGATTCTTGCCGTCTGAGTTTGGGATGGACGTGGACAA 359
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 354 TAAAGAAGCCGGTAACGTCAAGAGATTCTTTCCGTCTGAGTTTGGGATGGATGTGGACAG 413
Query 360 GTCAAGTGCGGTTGAGCCTGCGAAATCGGCTTTTGGGAGG-AAACTACAGACAAGGAGAG 418
| | |||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||
Sbjct 414 GACGAGTGCGGTTGAGCCGGCGAAATCGGCTTTTGC-AGGGAAACTACAGACCAGGAGA- 471
Query 419 ACA-TAGAAGCGGAAGGAATACCATACACTTACCTTGTTACCAATTACTTTGCTGGTTAC 477
|| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 ACCGTTGAAGCCGAAGGAATACCATACACTTACCTTGTTACCAATTACTTTGCTGGTTAC 531
Query 478 TACTTGCCCACATTGGTTCAGCTGGAGCCAGGTCTCACTTCTCCTCCTAGAGATAAAGTC 537
||||||||||||||||||||| | ||||| ||||||||||||||||||| ||||||||||
Sbjct 532 TACTTGCCCACATTGGTTCAGTTAGAGCCTGGTCTCACTTCTCCTCCTAAAGATAAAGTC 591
Query 538 AAAAT-TTTCGGAGATGGAAATGTCAAAGCTGTGATCAACAAGGAGGAAGATATTGCTGC 596
||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 592 AAAATATTT-GGAGACGGAAATGCCAAAGCTGTGATCAACAAGGAGGAAGATATTGCTGC 650
Query 597 TTACACTATCAAAGCGGTGGATGATCCAAGGACTCTGAATAAAACCCTCTACATTAATCC 656
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct 651 TTACACTATCAAAGCGGTGGATGATCCGAGGACTCTAAATAAAACCCTCTACATTAGTCC 710
Query 657 TCCTAACAACACTTTATCGATGAACGAAATAGTCACCTTGTGGGAGAAAAAGATTGGCAA 716
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 711 TCCTAACAACACTTTATCAATGAACGAAATAGTCACCTTGTGGGAGAAAAAGATCGGCAA 770
Query 717 GTCTGTTGAGAAGATTTACATGTCAGAGGAACAAATCTTTAAAAGCATCCAAGAGTCTCC 776
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GTCTCTTGAGAAGATATACATGTCAGAGGAACAAATCTTTAAAAGCATCCAAGAGTCTCC 830
Query 777 GGTTCCCTTCAACGTTCTTCTGTCGATAAACCACGCGGTGTTTGTGAAAGGAGATCAGAC 836
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 831 GGTTCCCTTCAACGTTCTTCTGTCGATAAACCACGCAGTGTTTGTGAAAGGTGATCAAAC 890
Query 837 CAATTTCACTATAGAGCCTTCATTCGGTTTTGAAGCCTCTGAGCTTTACCCTGATATCAA 896
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 891 CAATTTCAGTATAGAGCCTTCGTTCGGTTTTGAAGCCTCTGAGCTTTACCCTGATATCAA 950
Query 897 GTACACGAGTATTGATGAGTATCTCAGTTATTTCGCTTTAGGAACTTCATTAAACACCTA 956
||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 951 GTACACGAGTATTGAGGAGTATCTCAGTTATTTCGCTTAATGAACTTCATTAAACACCTA 1010
Query 957 A 957
|
Sbjct 1011 A 1011
> Ahg476671 jgi|Araly1|476671|fgenesh2_kg.2__1801__AT1G75280.1
Length=1197
Score = 1153 bits (624), Expect = 0.0
Identities = 854/965 (88%), Gaps = 16/965 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTCAGAGAAAAGCAAGATTCTGGTGATCGGAGGGACTGGTCACATCGGAAAACTC 60
||||| || |||||||||||||||||||||||||| || |||||| ||||||||||| ||
Sbjct 26 ATGGCTTCGGAGAAAAGCAAGATTCTGGTGATCGGCGGAACTGGTTACATCGGAAAATTC 85
Query 61 ATTATAGAAGCGAGCGTGAAAGCCGGACACTCCACACTGGCTCTCGTTAGAGAAGCCTCG 120
||| |||||||||||| ||||| || ||| ||||| | ||||| ||||||||||| |
Sbjct 86 ATTGTAGAAGCGAGCGCCAAAGCTGGCCACACCACATTCGCTCTGGTTAGAGAAGCAACT 145
Query 121 CTCTCCGATCCCAACAAGGGCAAAACCGTCCAGAATTTCAAAGATTTTGGCGTCACATTA 180
|||||||||||| |||||||||||||||||||| |||||||||| | ||||||||| ||
Sbjct 146 CTCTCCGATCCCGTCAAGGGCAAAACCGTCCAGAGTTTCAAAGATCTCGGCGTCACAATA 205
Query 181 CTTCACGGGGATTTGAACGATCATGAGAGCTTAGTGAAGGCCATTAAACAGGCCGATGTG 240
|| ||||| |||||||| ||||| || |||||||| |||||||||||||||| |||||||
Sbjct 206 CTACACGGAGATTTGAATGATCACGAAAGCTTAGTAAAGGCCATTAAACAGGTCGATGTG 265
Query 241 GTTATATCAACCGTTGGGAGCATGCAAATCTTGGATCAAACCAAGATCATTTCAGCTATT 300
|| ||||| |||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 266 GTGATATCGACCGTTGGGAGCTTGCAAATCTTGGATCAAACCAAGATCATTTCCGCCATT 325
Query 301 AAAGAAGCCGGTAACGTCAAGAGATTCTTGCCGTCTGAGTTTGGGATGGACGTGGACAAG 360
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 326 AAAGAAGCTGGTAACGTCAAGAGATTCTTGCCGTCTGAGTTTGGGGCGGACGTGGACAGG 385
Query 361 TCAAGTGCGGTTGAGCCTGCGAAATCGGCTTTTGGGA-GGAA-ACTACAGA-CAAGGAGA 417
|||||||||||||||| ||||||||||||||| | | |||| | |||||| | ||||||
Sbjct 386 ACAAGTGCGGTTGAGCCAGCGAAATCGGCTTTT-GCAGGGAAGA-TACAGATC-AGGAGA 442
Query 418 GACATAGAAGCGGAAGGAATACCATACACTTAC-CTTGTTACCAATTACTTTGCTGGTTA 476
| | | ||||||||||||||||||||||| ||| | ||| ||| || |||||| |||||
Sbjct 443 GCCGTTGAAGCGGAAGGAATACCATACACGTACGC-TGTCACCGGTTGCTTTGCCGGTTA 501
Query 477 CTACTTGCCCACATTGGTTCAGCTGGAGCCAGGTCTCACTTCTCCTCCTAGAGATAAAGT 536
||||||||| |||||||||||| | ||||| ||||||||||||||||||||||| |||||
Sbjct 502 CTACTTGCCTACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCTAGAGACAAAGT 561
Query 537 CAAAATT-TTCGGAGATGGAAATGTCAAAGCTGTGATCAACAAGGAGGAAGATATTGCTG 595
|| ||| || || |||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 562 CACCATTCTT-GGCGATGGAAATGCCAAAGCTGTGATCAACAAAGAGGAAGATATTGCTG 620
Query 596 CTTACACTATCAAAGCGGTGGATGATCCAAGGACTCTGAATAAAACCCTCTACATTAATC 655
||||||| ||||| || |||||||| || ||||||||||| |||| ||||||||||| |
Sbjct 621 CTTACACGATCAAGGCTGTGGATGACCCTAGGACTCTGAACAAAATTCTCTACATTAAGC 680
Query 656 CTCCTAACAACACTTTATCGATGAACGAAATAGTCACCTTGTGGGAGAAAAAGATTGGCA 715
|||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 681 CTCCTAACAATACTTTATCTATGAACGAAATTGTCACCTTGTGGGAGAAAAAGATCGGCA 740
Query 716 AGTCTGTTGAGAAGATTTACATGT-CAGAGGAACAAAT-CTTTAAAAGCATCCAAGAGTC 773
||||| ||||||||| | |||| | |||| |||||||| | |||||||||||||||||||
Sbjct 741 AGTCTCTTGAGAAGACTCACAT-TCCAGACGAACAAATAC-TTAAAAGCATCCAAGAGTC 798
Query 774 TCCGGTTCCCTTCAACGTTCTTCTGTCGATAAACCACGCGGTGTTTGTGAAAGGAGATCA 833
|||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TCCGGTTCCCATCAATGTTGTTCTGTCGATAAACCACGCGGTGTTTGTGAAAGGAGATCA 858
Query 834 GACCAATTTCACTATAGAGCCTTCATTCGGTTTTGAAGCCTCTGAGCTTTACCCTGATAT 893
|||||||||||||||||||||||| || ||| | |||||||||||||||||||||||| |
Sbjct 859 GACCAATTTCACTATAGAGCCTTCCTTTGGTGTGGAAGCCTCTGAGCTTTACCCTGATGT 918
Query 894 CAAGTACACGAGTATTGATGAGTATCTCAGTTATTTCGCTTT-AGGAACTTCATTAAACA 952
||||||||||||| |||| |||||||||||||| |||| ||| | || ||||| |||||
Sbjct 919 CAAGTACACGAGTGTTGACGAGTATCTCAGTTACTTCG-TTTGATAAATTTCATAAAACA 977
Query 953 CCTAA 957
| |||
Sbjct 978 CGTAA 982
> Ahg316461 jgi|Araly1|316461|fgenesh1_pm.C_scaffold_2001494
Length=846
Score = 361 bits (195), Expect = 7e-99
Identities = 316/374 (84%), Gaps = 10/374 (3%)
Strand=Plus/Plus
Query 1 ATGGCGTCAGAGAAAAGCAAGATTCTGGTGATCGGAGGGACTGGTCACATCGGAAAACTC 60
|||||| | |||||| |||||||||||||||||||||| |||||| |||| ||| || ||
Sbjct 1 ATGGCGACGGAGAAATGCAAGATTCTGGTGATCGGAGGTACTGGTTACATGGGAGAATTC 60
Query 61 ATTATAGAAGCGAGCGTGAAAGC-CGGACACTCC-ACACTGGCTCTCGTTAGAGAAGCCT 118
|| | |||| ||||| |||||| | | || || ||| | ||||| || ||||||| |
Sbjct 61 ATCGTTGAAGGGAGCGCGAAAGCTAGTA-AC-CCAACATTCGCTCTTGTCCGAGAAGCAT 118
Query 119 CGCTCTCCGATCCCAACAAG-GGCAAAACCGTCCAGAATTTCAAAGATTTTGGCGTCACA 177
| ||||||||||| |||| || |||||| |||||| |||||||||| | || ||||||
Sbjct 119 CTCTCTCCGATCCTGTCAAGAGG-AAAACCATCCAGAGTTTCAAAGATCTCGGGGTCACA 177
Query 178 TTACTTCACGGGGATTTGAACGATCATGAGAGCTTAGTGAAGGCCATTAAACAGGCCGAT 237
|||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 178 ATACTACACGGAGATTTGAATGATCATGAGAGCTTAGTGAAGGCCATTAAACAGGTTGAT 237
Query 238 GTGGTTATATCAACCGTTGGG-AGCATGCAAATCTTGGATCAAACCAAGATCATTTCAGC 296
||||| ||||||||| | ||| | || |||||||||||||||||||||||||||||| ||
Sbjct 238 GTGGTGATATCAACCATCGGGCA-CAAGCAAATCTTGGATCAAACCAAGATCATTTCCGC 296
Query 297 TATTAAAGAAGCCGGTAACGTCAAGAGATTCTTGCCGTCTGAGTTTGGGATGGACGTGGA 356
|||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||
Sbjct 297 CATTAAAGAAGCCGGTAACGTCAGGAGATTCTTGCCGGCTGAGTTTGGGACAGACGTGGA 356
Query 357 CA-AGTCAAGTGCG 369
| | ||||||||
Sbjct 357 GAGAA-CAAGTGCG 369
Score = 303 bits (164), Expect = 1e-81
Identities = 224/253 (89%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 519 TCCTCCTAGAGATAAAGTCAAAATTTTCGGAGATGGAAATGTCAAAG-CTGTGATCAACA 577
|||||||||||| ||||||| || || || |||||||||| ||||| | | | || |
Sbjct 501 TCCTCCTAGAGACAAAGTCACCATATTAGGCGATGGAAATGCCAAAGAATCT-TTTAAGA 559
Query 578 AGGAGGAAGATATTGCTGCTTACACTATCAAAG-CGGTGGATGATCCAAGGACTCTGAAT 636
| ||||||||||||||||||||||| ||| | | | |||||||||||||||||||||||
Sbjct 560 AAGAGGAAGATATTGCTGCTTACACGATC-AGGACAGTGGATGATCCAAGGACTCTGAAC 618
Query 637 AAAACCCTCTACATTAATCCTCCTAACAACACTTTATCGATGAACGAAATAGTCACCTTG 696
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 619 AAAACCCTCTACATTAGTCCTCCTAACAACACTTTATCGATGAACGAAATGGTCACCTTG 678
Query 697 TGGGAGAAAAAGATTGGCAAGTCTGTTGAGAAGATTTACATGTCAGAGGAACAAATCTTT 756
|||||||||||||| ||||||||||||||||||| | |||| ||||| ||||||||| ||
Sbjct 679 TGGGAGAAAAAGATCGGCAAGTCTGTTGAGAAGACTCACATATCAGAAGAACAAATCCTT 738
Query 757 AAAAGCATCCAAG 769
|||||||||||||
Sbjct 739 AAAAGCATCCAAG 751
Score = 100 bits (54), Expect = 2e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 868 GAAGCCTCTGAGCTTTACCCTGATATCAAGTACACGAGTATTGATGAGTATCTCAGT 924
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 778 GAAGCCTCTGAGCTTTACCCTGATGTCAAGTACACGAGTATTGATGAGTATCTCAGT 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35530558644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5