BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75300.1
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476671 jgi|Araly1|476671|fgenesh2_kg.2__1801__AT1G75280.1 604 3e-172
Ahg316461 jgi|Araly1|316461|fgenesh1_pm.C_scaffold_2001494 588 3e-167
Ahg476672 jgi|Araly1|476672|fgenesh2_kg.2__1802__AT1G75290.1 497 6e-140
> Ahg476671 jgi|Araly1|476671|fgenesh2_kg.2__1801__AT1G75280.1
Length=1197
Score = 604 bits (327), Expect = 3e-172
Identities = 483/559 (86%), Gaps = 8/559 (1%)
Strand=Plus/Plus
Query 54 AAACATGACGACGGAGAAAAGCAAGATTCTGGTGATCGGAGGGACTGGTTACATGGGAGA 113
||||||| | |||||||||||||||||||||||||||| || ||||||||||| ||| |
Sbjct 22 AAACATGGCTTCGGAGAAAAGCAAGATTCTGGTGATCGGCGGAACTGGTTACATCGGAAA 81
Query 114 ATTCATCGTTGAAGGGAGCGCGAAAGCCGGTAAC-CCAACATTCGCTCTTGTCCGAGAAG 172
|||||| || |||| |||||| ||||| || || || ||||||||||| || ||||||
Sbjct 82 ATTCATTGTAGAAGCGAGCGCCAAAGCTGGCCACACC-ACATTCGCTCTGGTTAGAGAAG 140
Query 173 CATCTCTCTCTGATCCTGTCAAGAGCAAAACCATCCAGAGCTTCAAAGATCTCGGTGTCA 232
|| ||||||| ||||| |||||| |||||||| ||||||| |||||||||||||| ||||
Sbjct 141 CAACTCTCTCCGATCCCGTCAAGGGCAAAACCGTCCAGAGTTTCAAAGATCTCGGCGTCA 200
Query 233 CAATACTACACGGAGATTTGAATGATCATGAGAGCTTAGTTAAGGCCATTAAACAGGTTG 292
|||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |
Sbjct 201 CAATACTACACGGAGATTTGAATGATCACGAAAGCTTAGTAAAGGCCATTAAACAGGTCG 260
Query 293 ATGTGGTGATATCAACCATCGGGCA-CAAGCAAATCTTTGATCAAACCAAGATCATTTCC 351
||||||||||||| ||| | ||| | | ||||||||| |||||||||||||||||||||
Sbjct 261 ATGTGGTGATATCGACCGTTGGG-AGCTTGCAAATCTTGGATCAAACCAAGATCATTTCC 319
Query 352 GCCATTAAAGAAGCTGGTAACGTCAAGAGATTCTTGCCGGCTGAGTTTGGGATAGACGTT 411
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 320 GCCATTAAAGAAGCTGGTAACGTCAAGAGATTCTTGCCGTCTGAGTTTGGGGCGGACGTG 379
Query 412 GAGAGGACCAGTGCGGTTGAGCCGGCAAAATCAT-TATTTGCAGGGAAGGTACAGATCAG 470
|| ||||| |||||||||||||| || ||||| | |||||||||||| ||||||||||
Sbjct 380 GACAGGACAAGTGCGGTTGAGCCAGCGAAATCGGCT-TTTGCAGGGAAGATACAGATCAG 438
Query 471 GAGAGCCATTGAAGCTGAAGGAATACCATACACTTACGTTGTTAGCAATTGCTCTGCCGG 530
||||||| ||||||| ||||||||||||||||| |||| ||| | | ||||| ||||||
Sbjct 439 GAGAGCCGTTGAAGCGGAAGGAATACCATACACGTACGCTGTCACCGGTTGCTTTGCCGG 498
Query 531 TTTTTACTTGCGTACGTTACTTCAGTTCGAGTCTGGTCTCATTTCTCATACTAGAGACAA 590
|| ||||||| ||| || ||||||||||| ||||||||| ||||| | ||||||||||
Sbjct 499 TTACTACTTGCCTACATTGGTTCAGTTCGAGCCTGGTCTCACTTCTCCTCCTAGAGACAA 558
Query 591 GGCCATCAT-CTTTGGCGA 608
| || ||| ||| |||||
Sbjct 559 AGTCACCATTCTT-GGCGA 576
Score = 475 bits (257), Expect = 3e-133
Identities = 381/438 (87%), Gaps = 20/438 (5%)
Strand=Plus/Plus
Query 618 TCCTCCTAGAGACAAAGTCACCA-TATTAGGCGATGGAAATGCCAAAGTTGTGATCAACA 676
||||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||
Sbjct 544 TCCTCCTAGAGACAAAGTCACCATTCTT-GGCGATGGAAATGCCAAAGCTGTGATCAACA 602
Query 677 AAGAGGAAGATGTTGCAGCTTACATGATCAAGGCGGTGGATGA-TCTAAGGACTCTGAAC 735
||||||||||| |||| ||||||| ||||||||| |||||||| || ||||||||||||
Sbjct 603 AAGAGGAAGATATTGCTGCTTACACGATCAAGGCTGTGGATGACCCT-AGGACTCTGAAC 661
Query 736 AAAACCCTCTACATT-AGTCCTCCTAACAACATTTTATCGATGAACGAAATGGTCACCTT 794
|||| ||||||||| || ||||||||||| | |||||| ||||||||||| ||||||||
Sbjct 662 AAAATTCTCTACATTAAG-CCTCCTAACAATACTTTATCTATGAACGAAATTGTCACCTT 720
Query 795 GTGGGAGAAAAAGATCGGCAAGTCTCTTGAGAAGACTCACATATC-AGAAGAGCAAATCC 853
|||||||||||||||||||||||||||||||||||||||||| || ||| || ||||| |
Sbjct 721 GTGGGAGAAAAAGATCGGCAAGTCTCTTGAGAAGACTCACAT-TCCAGACGAACAAATAC 779
Query 854 TTAAAAGCATCCAAG--T-TCC----C--ATCGATGTT-TTCAAGTCTATAAACCACGCG 903
||||||||||||||| | ||| | ||| ||||| ||| ||| ||||||||||||
Sbjct 780 TTAAAAGCATCCAAGAGTCTCCGGTTCCCATCAATGTTGTTCT-GTCGATAAACCACGCG 838
Query 904 GTGTTTGTGAAGGGAGATCAGACCAGTTTCACAATAGAGCCTTGGTTCGGTGAAGAAGCC 963
||||||||||| ||||||||||||| |||||| |||||||||| || |||| ||||||
Sbjct 839 GTGTTTGTGAAAGGAGATCAGACCAATTTCACTATAGAGCCTTCCTTTGGTGTGGAAGCC 898
Query 964 TCTGTGCTTTACCCTGATGTCAAGTACACGAGTATTGATGAGTATCTCAGTCAATTCACT 1023
|||| |||||||||||||||||||||||||||| |||| |||||||||||| | ||| |
Sbjct 899 TCTGAGCTTTACCCTGATGTCAAGTACACGAGTGTTGACGAGTATCTCAGTTACTTCGTT 958
Query 1024 TGAGAACAATTCACAAAA 1041
||| || | |||| ||||
Sbjct 959 TGATAA-ATTTCATAAAA 975
> Ahg316461 jgi|Araly1|316461|fgenesh1_pm.C_scaffold_2001494
Length=846
Score = 588 bits (318), Expect = 3e-167
Identities = 352/369 (95%), Gaps = 0/369 (0%)
Strand=Plus/Plus
Query 58 ATGACGACGGAGAAAAGCAAGATTCTGGTGATCGGAGGGACTGGTTACATGGGAGAATTC 117
||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCGACGGAGAAATGCAAGATTCTGGTGATCGGAGGTACTGGTTACATGGGAGAATTC 60
Query 118 ATCGTTGAAGGGAGCGCGAAAGCCGGTAACCCAACATTCGCTCTTGTCCGAGAAGCATCT 177
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 ATCGTTGAAGGGAGCGCGAAAGCTAGTAACCCAACATTCGCTCTTGTCCGAGAAGCATCT 120
Query 178 CTCTCTGATCCTGTCAAGAGCAAAACCATCCAGAGCTTCAAAGATCTCGGTGTCACAATA 237
||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 121 CTCTCCGATCCTGTCAAGAGGAAAACCATCCAGAGTTTCAAAGATCTCGGGGTCACAATA 180
Query 238 CTACACGGAGATTTGAATGATCATGAGAGCTTAGTTAAGGCCATTAAACAGGTTGATGTG 297
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CTACACGGAGATTTGAATGATCATGAGAGCTTAGTGAAGGCCATTAAACAGGTTGATGTG 240
Query 298 GTGATATCAACCATCGGGCACAAGCAAATCTTTGATCAAACCAAGATCATTTCCGCCATT 357
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 GTGATATCAACCATCGGGCACAAGCAAATCTTGGATCAAACCAAGATCATTTCCGCCATT 300
Query 358 AAAGAAGCTGGTAACGTCAAGAGATTCTTGCCGGCTGAGTTTGGGATAGACGTTGAGAGG 417
|||||||| |||||||||| |||||||||||||||||||||||||| |||||| |||||
Sbjct 301 AAAGAAGCCGGTAACGTCAGGAGATTCTTGCCGGCTGAGTTTGGGACAGACGTGGAGAGA 360
Query 418 ACCAGTGCG 426
|| ||||||
Sbjct 361 ACAAGTGCG 369
Score = 473 bits (256), Expect = 1e-132
Identities = 362/408 (89%), Gaps = 27/408 (7%)
Strand=Plus/Plus
Query 464 AGATCAGGAGAGCCATTGAAGCTGAAGGAATACCATACACTTACGTTGTTAGCAATTGCT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 370 AGATCAGGAGAGCCATTGAAGCTGAAGGAATACCATACACTTACGTTGTTAGCAA----T 425
Query 524 CTGCCGGTTTTTACTTGCGTACGTTACTTCAGTTCGAGTCTGGTCTCATTTCTCATACTA 583
|| | | | || | |||||||||||||||||||||||||||||||||
Sbjct 426 -TG-C-G--------T---TA-G----TTCAGTTCGAGTCTGGTCTCATTTCTCATACTA 466
Query 584 GAGACAAGGCCATCATCTTTGGCGACAAAAATGTTCCTCCTAGAGACAAAGTCACCATAT 643
||||||||| |||| | |||||| | |||||||||||||||||||||||||||||||||
Sbjct 467 GAGACAAGGACATCCTTTTTGGCAAGGAAAATGTTCCTCCTAGAGACAAAGTCACCATAT 526
Query 644 TAGGCGATGGAAATGCCAAAGT-TGTGATCAACAAAGAGGAAGATGTTGCAGCTTACATG 702
||||||||||||||||||||| | | | || |||||||||||| |||| ||||||| |
Sbjct 527 TAGGCGATGGAAATGCCAAAGAATCTTTT-AAGAAAGAGGAAGATATTGCTGCTTACACG 585
Query 703 ATCAAGG-CGGTGGATGATCTAAGGACTCTGAACAAAACCCTCTACATTAGTCCTCCTAA 761
|||| || | |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 586 ATCA-GGACAGTGGATGATCCAAGGACTCTGAACAAAACCCTCTACATTAGTCCTCCTAA 644
Query 762 CAACATTTTATCGATGAACGAAATGGTCACCTTGTGGGAGAAAAAGATCGGCAAGTCTCT 821
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 645 CAACACTTTATCGATGAACGAAATGGTCACCTTGTGGGAGAAAAAGATCGGCAAGTCTGT 704
Query 822 TGAGAAGACTCACATATCAGAAGAGCAAATCCTTAAAAGCATCCAAGT 869
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 705 TGAGAAGACTCACATATCAGAAGAACAAATCCTTAAAAGCATCCAAGT 752
Score = 122 bits (66), Expect = 4e-27
Identities = 75/79 (95%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 948 GTTCGGTGAAGAAGCCTCTGTGCTTTACCCTGATGTCAAGTACACGAGTATTGATGAGTA 1007
||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 769 GTT-GGTGAGGAAGCCTCTGAGCTTTACCCTGATGTCAAGTACACGAGTATTGATGAGTA 827
Query 1008 TCTCAGTCAATTCACTTGA 1026
|||||||||||||| ||||
Sbjct 828 TCTCAGTCAATTCATTTGA 846
> Ahg476672 jgi|Araly1|476672|fgenesh2_kg.2__1802__AT1G75290.1
Length=1113
Score = 497 bits (269), Expect = 6e-140
Identities = 469/566 (83%), Gaps = 12/566 (2%)
Strand=Plus/Plus
Query 57 CATGACGACGGAGAAAAGCAAGATTCTGGTGATCGGAGGGACTGGTTACATGGG-AGAAT 115
|||| || ||||||||||||||||||||||||||||||| |||||| |||| || | ||
Sbjct 54 CATGGCGTCGGAGAAAAGCAAGATTCTGGTGATCGGAGGAACTGGTCACATCGGTA-AAC 112
Query 116 TCATCGTTGAAGGGAGCGCGAAAGCCGGTA-AC-CCAACATTCGCTCTTGTCCGAGAAGC 173
|||| | |||| ||||| ||||||||| | || ||| || | ||||| || |||||||
Sbjct 113 TCATAATAGAAGCGAGCGTGAAAGCCGG-ACACTCCA-CACTGGCTCTGGTTAGAGAAGC 170
Query 174 ATCTCTCTCTGATC-CTGTCAAGAGCAAAACCATCCAGAGCTTCAAAGATCTCGGTGTCA 232
||| |||| |||| | | |||| |||||||| |||||| || ||||||||||| ||||
Sbjct 171 CTCTGTCTCCGATCTC-GACAAGGGCAAAACCGTCCAGAATTTTAAAGATCTCGGCGTCA 229
Query 233 CAATACTACACGGAGATTTGAATGATCATGAGAGCTTAGTTAAGGCCATTAAACAGGTTG 292
||||||| ||||| |||||||| ||||| ||||||||||| |||||||||||||| | |
Sbjct 230 CAATACTTCACGGGGATTTGAACGATCACGAGAGCTTAGTGAAGGCCATTAAACAAGCCG 289
Query 293 ATGTGGTGATATCAACCATCGGGCA-CAAGCAAATCTTTGATCAAACCAAGATCATTTCC 351
||||||| ||||||||| | ||| | || ||||||||| ||||||||||||||||||||
Sbjct 290 ATGTGGTTATATCAACCGTTGGG-AGCATGCAAATCTTGGATCAAACCAAGATCATTTCA 348
Query 352 GCCATTAAAGAAGCTGGTAACGTCAAGAGATTCTTGCCGGCTGAGTTTGGGATAGACGTT 411
|| ||||||||||| |||||||||||||||||||| ||| ||||||||||||| || ||
Sbjct 349 GCTATTAAAGAAGCCGGTAACGTCAAGAGATTCTTTCCGTCTGAGTTTGGGATGGATGTG 408
Query 412 GAGAGGACCAGTGCGGTTGAGCCGGCAAAATCAT-TATTTGCAGGGAAGGTACAGATCAG 470
|| ||||| ||||||||||||||||| ||||| | ||||||||||| |||||| |||
Sbjct 409 GACAGGACGAGTGCGGTTGAGCCGGCGAAATCGGCT-TTTGCAGGGAAACTACAGACCAG 467
Query 471 GAGAGCCATTGAAGCTGAAGGAATACCATACACTTACGTTGTTAGCAATTGCTCTGCCGG 530
|||| || ||||||| ||||||||||||||||||||| |||||| ||||| || ||| ||
Sbjct 468 GAGAACCGTTGAAGCCGAAGGAATACCATACACTTACCTTGTTACCAATTACTTTGCTGG 527
Query 531 TTTTTACTTGCGTACGTTACTTCAGTTCGAGTCTGGTCTCATTTCTCATACTAGAGACAA 590
|| ||||||| || || ||||||| ||| ||||||||| ||||| | ||| ||| ||
Sbjct 528 TTACTACTTGCCCACATTGGTTCAGTTAGAGCCTGGTCTCACTTCTCCTCCTAAAGATAA 587
Query 591 GGCCATCATCTTTGGCGACAAAAATG 616
| || || ||||| ||| |||||
Sbjct 588 AGTCAAAATATTTGGAGACGGAAATG 613
Score = 424 bits (229), Expect = 1e-117
Identities = 363/426 (85%), Gaps = 16/426 (4%)
Strand=Plus/Plus
Query 618 TCCTCCTAGAGACAAAGTCACCATATTAGGCGATGGAAATGCCAAAGTTGTGATCAACAA 677
|||||||| ||| ||||||| ||||| || || ||||||||||||| ||||||||||||
Sbjct 573 TCCTCCTAAAGATAAAGTCAAAATATTTGGAGACGGAAATGCCAAAGCTGTGATCAACAA 632
Query 678 AGAGGAAGATGTTGCAGCTTACA-TGATCAAGGCGGTGGATGATCTAAGGACTCTGAACA 736
||||||||| |||| ||||||| | ||||| ||||||||||||| |||||||| || |
Sbjct 633 GGAGGAAGATATTGCTGCTTACACT-ATCAAAGCGGTGGATGATCCGAGGACTCTAAATA 691
Query 737 AAACCCTCTACATTAGTCCTCCTAACAACATTTTATCGATGAACGAAATGGTCACCTTGT 796
|||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||
Sbjct 692 AAACCCTCTACATTAGTCCTCCTAACAACACTTTATCAATGAACGAAATAGTCACCTTGT 751
Query 797 GGGAGAAAAAGATCGGCAAGTCTCTTGAGAAGAC-TCACATATCAGAAGAGCAAATCCTT 855
||||||||||||||||||||||||||||||||| | |||| ||||| || |||||| ||
Sbjct 752 GGGAGAAAAAGATCGGCAAGTCTCTTGAGAAGATAT-ACATGTCAGAGGAACAAATCTTT 810
Query 856 AAAAGCATCCAAG--T-TCC----CA-T-CGATGTT-TTCAAGTCTATAAACCACGCGGT 905
||||||||||||| | ||| | | | | ||| ||| ||| ||||||||||| ||
Sbjct 811 AAAAGCATCCAAGAGTCTCCGGTTCCCTTCAACGTTCTTCT-GTCGATAAACCACGCAGT 869
Query 906 GTTTGTGAAGGGAGATCAGACCAGTTTCACAATAGAGCCTTGGTTCGGTGAAGAAGCCTC 965
||||||||| || ||||| |||| ||||| |||||||||| ||||||| ||||||||
Sbjct 870 GTTTGTGAAAGGTGATCAAACCAATTTCAGTATAGAGCCTTCGTTCGGTTTTGAAGCCTC 929
Query 966 TGTGCTTTACCCTGATGTCAAGTACACGAGTATTGATGAGTATCTCAGTCAATTCACTTG 1025
|| ||||||||||||| ||||||||||||||||||| |||||||||||| | ||| |||
Sbjct 930 TGAGCTTTACCCTGATATCAAGTACACGAGTATTGAGGAGTATCTCAGTTATTTCGCTTA 989
Query 1026 A-GAAC 1030
| ||||
Sbjct 990 ATGAAC 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42468929538
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5