BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75310.1
Length=4347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316462 jgi|Araly1|316462|fgenesh1_pm.C_scaffold_2001495 4737 0.0
> Ahg316462 jgi|Araly1|316462|fgenesh1_pm.C_scaffold_2001495
Length=4308
Score = 4737 bits (2565), Expect = 0.0
Identities = 2997/3202 (94%), Gaps = 44/3202 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTATGAGAAATCTCCCACTGCTACTACTTTCTCTAGGAAGATTAGTAATAATCGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGAGTATGAGAAATCTCCCACTGCTACTACTTTCTCTAGGAAGATTAGTGGTAATCGT 60
Query 61 AGCCATAGTCTTAGCTTTAGTGCAAATGCCGTATACGACGGAGTTTTTTCTTCTCCGGTG 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 61 AGCCATAGTCTTAGCTTTAGTGCAAATGCCGTTTACGACGGAGTTTTTTCTTCTCCGGCG 120
Query 121 AATTCGAAATCTCCTTTAGTTGATTACGGTGAGATTTTCCGAGGTTCAGGTCCTTCTCCG 180
||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 121 AATTCGAAATCTCCTTTGGTTGATTACGGCGAGATTTTCCGAGGTTCCGGTCCTTCTCCG 180
Query 181 TCTTCGATTCCGTTTCTGGATGTTCCGGAGCTGAACGTTGGTAAGGTTAAGGTCGATGTT 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 181 TCTTCGATTCCGTTTCTGGATGTCCCGGAGCTGAACGTTGGTAAGGTTAAGGTTGATGTT 240
Query 241 CGGAGTTCTAAGCTCGATTACTCTTCGGTGTTTGGTGGCTTAGGAGCTTGCGATTTTGCT 300
|||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||
Sbjct 241 CGGAGTTCTAAGCTCGATTACTCTTCCGTGTTTGGAGGCTTTGGAGCTTGCGATTTCGCT 300
Query 301 GTTACTCCTAAGGAGGTGATCATCAAGTCCGAGAAGAAAACCTCCATTAAC-GAGGATAA 359
|||||||||||||| ||||||||||||||||||||||||||| || || || ||||||||
Sbjct 301 GTTACTCCTAAGGAAGTGATCATCAAGTCCGAGAAGAAAACCGCCGTT-ACTGAGGATAA 359
Query 360 GAAAAGGAATCGTAGGAAAGGTGGAAATTCTTCTGATGTTCCTCTTTGCAACGAGGGGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAAAAGGAATCGTAGGAAAGGTGGAAATTCTTCTGATGTTCCTCTTTGCAACGAGGGGAA 419
Query 420 AAAATCACCTGAAATGGTTAGGATGAAGCACTCTGATATATCATATCACCAGACGGTCCC 479
|||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||
Sbjct 420 AAAATCACCTGAAATGGTTAAGATGAAGCACTCTGATATATTACATCACCAGACGGTTCC 479
Query 480 TCGTAATGAGAATGGGGCTACTCATCTTACTCAGGTCCCTGCTACTATGCCTGGTCCTAT 539
||| |||||||||||| ||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 480 TCGAAATGAGAATGGGACTACTCATCTTACTCAGGT-CCT-C-ACTATGCCTGGTCCTAG 536
Query 540 TCCGACTCAAGTGGTTGATAATACGAGTTTGTTGCACAAGATTGAAAGTAAATCAACTCC 599
||||||||||| |||||||||||||||||||||||| |||||||||||| || ||||||
Sbjct 537 TCCGACTCAAGCGGTTGATAATACGAGTTTGTTGCAGAAGATTGAAAGT-AA--AACTCC 593
Query 600 TATTCCAGCAGTTGAGAAGAAGCTGCCATGTAACGAGGGTCGTGAGGAAGTCAAGGCTTC 659
||||||| ||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 594 TATTCCAACAGTTGAGAAGAAACTGCCATGTAGCGAGGGTCATGAGGAAGTCAAGGCTTC 653
Query 660 TAGAAAGCAGGGATCTAAAACTGAGGTTGATTTTGAGAACATTTTTGCTCGAGATGGATG 719
|||||||| ||| |||||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct 654 TAGAAAGCGGGGTTCTAAAACTGAGGTCGATTTCGAGAACATTTTTGCTCGAAATGGATG 713
Query 720 CAGTACGCGTGATGACTCCACGTGTAAGACCGTTTCTAATGGTGAATATCGGGATGTGAA 779
|||||||| |||| ||||||||| ||||||| |||||| |||| | ||| | | |
Sbjct 714 CAGTACGCATGATAACTCCACGTCCAAGACCGATTCTAACGGTGGACATC---A-G-G-- 766
Query 780 ACCGCCTTCAAGCTTTCAGTGTACATTGAATGGTGAACATGGAGCTTCTGAAAGGTTATC 839
| || | | | || || | |||||||| |||||||||| ||||| |||||
Sbjct 767 A--TCC-T--A-C-TT---TG------G-ATGGTGAAAATGGAGCTTCCGAAAGATTATC 809
Query 840 GGGTTTAAATTCTGGGCCTTCGGAAAGGTATGAAACTGAAGATGCTGATTCTCCAAGTTC 899
|||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||
Sbjct 810 AGGTTTAGATTCTGGGCCTTCAGAAAGGTTTCAAACTGAAGATGCTGATTCTCCAAGTTC 869
Query 900 ACCTCCATACTTCGATGCTGAAACAGATGAAAATTCGGTTGCCGCTGAGTCTTCTGCAGC 959
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 870 ACCTCCATACTTCGATGCTGAAACAGATGCAAATTCGGCTGCCGCTGAGTCTTCTGCAGC 929
Query 960 ACTGAAAAAGGCTATAGAAGAGGCTCAAATAAGAATGAATATTGCAAAACAAATGATGGA 1019
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 930 ACTGAAAAAGGCTATAGATGAGGCACAAATAAGAATGAATATTGCAAAACAAATGATGGA 989
Query 1020 AAAGAAAAAGTCCGGCTTTCGCAGTTGTGCAAAACTGAAATCTTGTGATGACTCTAAAAT 1079
| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 990 TAGGAAAAAGTCAGGCTTTCGCAGTTGTGCAAAACTGAAATCTTGTGATGACCCTAAAAT 1049
Query 1080 TGAGAATAAAGGGAACACAAAGGTTGAAGGAATTACAGAAGAAAGCAGAGACAACAATTC 1139
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1050 TGAGAATAAAGGGGACACAAAGGTTGAAGGAATTACAGAAGAAAGCAGATACAACCATTC 1109
Query 1140 TCAGATTCTCGGTGAAATGGTGAAACCTTCTGAACAATCATTTTCAAACGAGGGAGATCA 1199
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1110 CCAGATTCTCGGTGAAATGGTGAAATCTTCTAAACAATCATTTTCAAACGAGGGAGATCA 1169
Query 1200 GCATGCTAAAAGAGCGCGGAAGCTGTGGGGAGTTCCTGAAGGACTTTTAAAATCAACTTC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 GCATGCTAAAAGAGCGCGGAAGCTGTGGGGAGTTCCTGAAGGACTTTTAAAATCAACTTC 1229
Query 1260 AGACCATAAGCCAGAAGAGTTAGAAGAGCAAGATATCATAACGCTAGAAGAGGAACAAGC 1319
|||||||||||||||||||||||| ||||||||| | |||| || ||||||||||||||
Sbjct 1230 AGACCATAAGCCAGAAGAGTTAGACGAGCAAGATGTGATAAAGCAAGAAGAGGAACAAGA 1289
Query 1320 ACGAAGAGGTCGAAAACACTGGGAATTACCTGGAGGGATATTCAAATCAGTTATGAATAG 1379
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1290 AAGAAGAGGTCGAAAACACTGGGAATTACCCGGAGGGATATTCAAATCAGTTATGAATAG 1349
Query 1380 TAAGCAGCAGGAGCCAGAAAACCTTGCACCAGCTAAACCTGAACCTGATACGAAACAAGA 1439
||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1350 TAAGCAGCAAGAGCCAGAAAACCTTGCACCAGCCAAACCTGAAACTGATACGAAACAAGA 1409
Query 1440 GGTGCAACCAATAACTGAGAATCCCTTCTATACATTTGGACAGCTTGGCAGTAAATTAAA 1499
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1410 GGTGCAACCATTAACTGAGAATCCCTTCTATACATTCGGACAGCTTGGCAGTAAAATAAA 1469
Query 1500 GTGTGTTGT---AGAGGCCTTCACGGGGAGCAAAGTTTCACAAAAGGATGAGAAACAGTT 1556
||||||||| |||||| |||||||||||||| | ||||||||| |||||||||||| |
Sbjct 1470 GTGTGTTGTTGTAGAGGCTTTCACGGGGAGCAAGGCTTCACAAAAAGATGAGAAACAGGT 1529
Query 1557 TACAGAGAAGGAAAATTCTA-CCGTCACTCAAATGGTTCAAGATGAGGAAAGTGACTCAC 1615
||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||||
Sbjct 1530 TACAGAGAAGGAAAACTCTATCC-TCACTCAAATGGTTCAAGGTGAGGAAAGTGACTCAA 1588
Query 1616 AAGAGATGCTAGCTGGTATTCCAGTCATAGAAACATACTTAAGGGAAGTGGAAGAGACCC 1675
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1589 AAGAGATGCTAGCTGGTATTCCAGTCATGGAAACATACTTAAGGGAAGTGGAAGAGACCC 1648
Query 1676 CACAACAAACTGAGAGTAAGAGCGAAATGAATATTGAAGAGAAGTCTGAATCAACCATAT 1735
| |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 1649 CGCAACAAACTGAGAGTAAGAGCGAAATTAATATTGAAGAGAAGTCTGAATCTACAATAT 1708
Query 1736 GTGCTTTCACAGAAAGGTCTTCTCAGAATATGGAGAAAGAAACAGGATGGCAAGTTAAAA 1795
|| ||||||||||| |||||||||||| ||||||||||||||||||||| || |||||||
Sbjct 1709 GTACTTTCACAGAAGGGTCTTCTCAGAGTATGGAGAAAGAAACAGGATGTCACGTTAAAA 1768
Query 1796 GTGCTTGCAAGTTCGAAGATGGATCTGGGGTAAAAGATTTCCAAGAAAATGGTGACCACA 1855
||||||| ||| ||| | ||||||||| ||||||||||||||||||||| |||||| |
Sbjct 1769 GTGCTTGTGAGTCCGAGGGTGGATCTGGCGTAAAAGATTTCCAAGAAAATTCTGACCAAA 1828
Query 1856 CTTGCAATGTTCTAGATCAGGAAGGTGAGAAGGAGATAGTCTCTGAGCCACAGGAGATGT 1915
||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||
Sbjct 1829 CTTGCAATGTTGTAGATCAGGAAAGTGAGAAGGAGATACTCTCTGAGCCACAAGAGATGT 1888
Query 1916 TAGTTGGTCCTGATGATTCCAAAACATATGTAAGGGAAGTGGAAGAAACCCCAACACCGA 1975
||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||
Sbjct 1889 TAGTTGGTCCTGATGATACCAAAACATATGTAAGGGAAGTGGAAGGAATCCCAACACCGA 1948
Query 1976 GTTTGAATAAAACTCAGTCCGATGATAGTGTTGGAGCTATGGTGTCTTTTAACAGAGTAA 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1949 GTTTGAATAAAACTCAGTCCGATGATAGTGTTGGAGCTATGGTGTCTTTTAACAGAG-AA 2007
Query 2036 AT-ATTTCTGAGCCAGGAAACATAGATGAGGTGCAAGAGGCAGTGCACAAGGTTCCCAGG 2094
|| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2008 ATTATTTCTGAGCCAGGAAACGTAGATGAGGTGCAAGAGACAGTGCACAAGGTTCCCAGA 2067
Query 2095 CGAAGAAGAGTTTGGAAGACCTCTGAAGACGTCTATAATATGATAAAGGCTCCGAAGGGA 2154
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2068 CGAAGAAGAGTTTGGAAGACCTCTGAAGACGTCTATAATATGATAAAGGCCCCGAAGGGA 2127
Query 2155 AACAACAGGCCCTGGCAGCTAGAAAGTGCGGAAAATGAAACCACAGCGATGTCCTTTCAT 2214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2128 AACAACAGGCCCTGGCAGCTAGAAAGTGCGGAAAATGAAACCACAGCGATGTCCTTTCAT 2187
Query 2215 GAGGAAGGTGTAAGGATCCATCATGCTAGCGAGGAAATAGAAAGCACATCTGGACAAGCT 2274
|| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 2188 GAAGAAGGTGTAAGGATCAATCATGCTAGCGAGGAAACAGAAAGCACATCTGGACAAGCG 2247
Query 2275 AGTGATTCAGGATTGCAAGAAAATTGGACCGTTCTTAAACAGATGTTTAGGCAGATGTTT 2334
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2248 AGTGATTCTGGATTGCAAGAAAATTGGACCGTACTTAAACAGATGTTTAGGCAGATGTTT 2307
Query 2335 CAGACAGCAGATACTAAGGGAGAGGATGAAACTTACTGCTTAGTGGAATCTGAAA-GGGG 2393
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2308 CAGACAGCAGATACTAAGGGAGAGGATGAAACTTACTGCTTAGTGGAATCTGAAAAGGGG 2367
Query 2394 ACATCTTGATATCCATCAAAAAGCTCAAGAAAAATATGAACAGGTTGAGGTGGAGACAGT 2453
|||||||||||||||| |||||||||||| |||||| |||||| |||||||||||||||
Sbjct 2368 -CATCTTGATATCCATCGAAAAGCTCAAGAGAAATATCAACAGGATGAGGTGGAGACAGT 2426
Query 2454 AAGAACGAATTATGAAGCCTATGCACATACCAGAGAAAATGAAGA-T-G-AGTCGGCACA 2510
||||||||||||||||| ||||||||||||||||||||||||||| | | | |||| |||
Sbjct 2427 AAGAACGAATTATGAAGACTATGCACATACCAGAGAAAATGAAGACTTGGAATCGGTACA 2486
Query 2511 AGAAACATATTGTAGAAAAGAGGATGGTAAGGTAGAAGTGCAAGGTAAAACGTCTTTGGT 2570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2487 AGAAACATATTGTAGAAAAGAGGATGGTAAGGTAGAAGTGCAAGGTAAAACGTCTTTGGT 2546
Query 2571 CCGTGAACTGATAGGAGAAGAACTAGAAATGGCTAGCCTAGAAGAAGAAGATGTGCAGGA 2630
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2547 CCGTGAACTGATAGGAGAAGAGCTAGAAATGGCTAGCCTAGAAGAGGAAGATGTGCAGGA 2606
Query 2631 AGCATCTGAAGAAGCTGGCTGGGTTCAAGGACTTTCTGAACTTAATGAGATAAATGAGCA 2690
|| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||
Sbjct 2607 AGAATCTGAAGAAGCTGGCTGGGTTCAAAGACTTTCTGAACTTAATGATATAAAGGAGCA 2666
Query 2691 TGCAGATTCTCATGCTGAAATGCTTGAATATGATCGAAGTGAAACAGATTCAAATAATTC 2750
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 2667 TGCAGATTCTCATGCTGAAATGCTTGAATACGTTCGAAGTGAAACAGATTCAAATAATTC 2726
Query 2751 TAGGGAGAGATTTGATCAAACACAGGAACAAGCAGAAGAAACTATGATCGATGGTAGTAT 2810
| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 2727 TGGGGAGAGATTTGAGCAAACACAGGAACAAGCCGAAGAAACTAAGATCGATGGTAGTAT 2786
Query 2811 AGATACTGACACCAGCAGGTCATCTTTTGAAATGAGACAAGGTGATTCATATATTGAGGA 2870
|||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct 2787 AGATACTGACACCAGCAGGTCATCTTTTGAAATGAGGCAAGGTGGTTCATACATTGAGGA 2846
Query 2871 GGTTGGCATTGAGCAACATCGCAGTGATCAATTCCCTGAAAAAGCTAGTGCTGTCAGTAA 2930
|||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||
Sbjct 2847 GGTTGGCATTGAGCAAGATCTCAGTGATCAATTCCCTGAAAAAGCCAGTGCTGTCAGTAG 2906
Query 2931 CACGGAAGAACACATTGAAGAAATAGATTCTGATTCGATTCAAAGTGGTTGGAGTGTTGT 2990
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2907 CACGGGAGAAAACATTGAAGAAATAGATTCTGATTCGATTCAAAGTGGTTGGAGTGTTGT 2966
Query 2991 AGAGGATGACGACAGATCACTGCAGGATGGAGGGGCAAGTCAGGCAGAAAGTAAGCATGA 3050
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2967 AGAGGATGACGACAGATCACTGCAGGATGGAGTGGCAAGTCAGGCAGAAAGTAAGCCTGA 3026
Query 3051 CGAATTGGAGGAAACCAAAGAAGAAAGTGATGAAATGAAAACAAGTCTTGGTGTAGAGAG 3110
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 3027 CGAATTGGAGGAAACCAAAGAAGAAAGTGATGAAATAAAAACAACTCTTGGTGTAGGGAG 3086
Query 3111 AAATGGAGATAAGAAAGAACTAGAGCACCAGTTTGAGTGTCAAGAGAATGAAACATATAG 3170
|||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 3087 AAATGGAGATAAGACAGAACTAGAGCACCGGTTTGAGTGTCAAGAGAATGAAACGGATAG 3146
Query 3171 AAGCAATGTGGAGGCAGCTGAG 3192
|||||||||||||||||| |||
Sbjct 3147 AAGCAATGTGGAGGCAGCAGAG 3168
Score = 1727 bits (935), Expect = 0.0
Identities = 1036/1084 (96%), Gaps = 9/1084 (1%)
Strand=Plus/Plus
Query 3273 gggagaggagagTTGTCGATCATCTATGGAAGAAGAGGGAGATGCTACTTCTGATATTGG 3332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3225 GGGAGAGGAGAGTTGTCGATCATCTATGGAAGAAGAGGGAGATGCTACTTCTGATATTGG 3284
Query 3333 CGCAGCAACAGATGGAAACATGAAAGAAAATGAGGGAGAGGAGAGTTGTCGATCATCTAT 3392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3285 CGCAGCAACAGATGGAAACATGAAAGAAAATGAGGGAGAGGAGAGTTGTCGATCATCTAT 3344
Query 3393 GGAAGAAGAGGGAGATGCTACTTCTGATATTTCACAAAACAAAGCAGAGACAGTTGAGGA 3452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3345 GGAAGAAGAGGGAGATGCTACTTCTGATATTTCACAAAACAAAGCAGAGACAGTTGAGGA 3404
Query 3453 ACATCTgaaaaagatagatgaaacaagagagaaagagagagaaagaaagcaagagagagt 3512
|||||||||||||| |||| ||||||| |||||||||||||||||| || |||||||| |
Sbjct 3405 ACATCTGAAAAAGAAAGATCAAACAAGGGAGAAAGAGAGAGAAAGAGAGAAAGAGAGATT 3464
Query 3513 tatggtagaaagagCTATTCGTGAAGCCCGCGAAAGGGCATTTGCTGATGCTATGGAAAG 3572
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3465 TATGGTAGAAAGAGCGATTCGTGAAGCCCGCGAAAGGGCATTTGCTGATGCTAGGGAAAG 3524
Query 3573 AGCAGGAAAAACTGCAATGGAGAAGGCAAAGGCAGTAGCCCACCGT--A--GA-----GA 3623
||||| ||| ||||| |||||||||||||||||| |||||||||| | || ||
Sbjct 3525 GGCAGGGAAAGCTGCACTGGAGAAGGCAAAGGCAGGAGCCCACCGTAAAGGGACTTCTGA 3584
Query 3624 GGTTCCAAGGAAATCAGAAAAGGGATCTGTTGAGGTAAACGATAAGTTATCATCAGCTGA 3683
||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 3585 GGTTCCAAGGAGATCAGAGAAGGGATCTGTTGAGGTAAATGATAAGTTATCATCAGCTGA 3644
Query 3684 GAAGGCTTCAATGCAAGCCAAACTCAGAGCTGAGCGTGCTGCTGTAGAACGAGCAATCAC 3743
||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct 3645 GAAAGCTTCAATGCAAGCCAAACTCAGAGCAGAGCGTGCTGCTGTAGAAAGAGCACTCAC 3704
Query 3744 TGAGGTCAGAGAACGTGCCATGGAAAAAGCATTGTCTGGTAAGTCTGCTGCTTCTCAAGC 3803
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3705 TGAGGCCAGAGAACGTGCCATGGAAAAAGCATTGTCTGGTAAGTCTGCTGCTTCTCAAAC 3764
Query 3804 AAAAAGTTATGGCGGCAGCAAGTCATTTAGCTCTTCTGGTGAAAGACGAGGCTCCTCATC 3863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3765 AAAAAGTTATGGCGGCAGCAAGTCATTTAGCTCTTCTGGTGAAAGACGAGGCTCCTCATC 3824
Query 3864 TTCTGGTACGGAGAACAAAAGTTCAGGTCCTTCCAATTCTTCAAACCAGACTGGTGAACC 3923
||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 3825 TTCTGGTGCGGAGAACAAAAGTTCAGGTCCTTCCAATTCTTCAAACCAGACTGGAGAGTC 3884
Query 3924 AATCCAGAGATGTAAAGCTAGATCTGAGAGACACCAGAGAACATCTGACCGCGCAGCAGA 3983
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3885 AATCCAGAGATGTAAAGCTAGATCTGAGAGACACCAGAGAACATCTGACCGCGCGGCAGA 3944
Query 3984 GGCTCTTGCAGAGAAGAAACTTCGTGATCTTAAAACCCAGAAAGAGCAGACAGAGAGAAA 4043
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 3945 GGCTCTTGCAGAGAAGAAACTTCGTGATCTTAAAGCTCAGAAAGAGCAGACAGAGAGAAA 4004
Query 4044 TAGACTCGCGGAAGCTCTTGATGCTGATGTCAAACGGTGGTCGAGTGGAAAGGAAAACAA 4103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4005 TAGACTCGCGGAAGCTCTTGATGCTGATGTCAAACGGTGGTCGAGTGGAAAGGAAAACAA 4064
Query 4104 CTTACGGGCGTTGATCTCAACACTCCAATATATACTTGGAGCAGAGAGTGGATGGAAACC 4163
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 4065 CTTACGGGCGTTGCTCTCAACACTCCAATATATACTTGGAGGAGAGAGTGGATGGAAACC 4124
Query 4164 GATTCCTCTCACTGATCTTGTCTCAAGCGCTTCTGTGAGAAAAGCCTACCGCAAGGCAAC 4223
||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||
Sbjct 4125 GATTCCTCTCACTGATCTTGTCTCAAGTGCTTCTGTGAGAAAAACCTACCGAAAGGCAAC 4184
Query 4224 TCTTTATGTTCATCCCGACAAGCTTCAACAACGTGGCGCATCCACACAGCAGAAGTACAT 4283
|||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 4185 TCTTTACGTCCATCCTGACAAGCTTCAACAACGTGGTGCATCCACACAGCAGAAGTACAT 4244
Query 4284 TTGTGAGAAAGTTTTTGACCTTCTCAAGGAAGCATGGAACAAATTTGGTGCTGACGAACG 4343
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 4245 TTGTGAGAAAGTTTTTGACCTTCTCAAGGAAGCATGGAACAAATTTGGTGCAGACGAACG 4304
Query 4344 ATAA 4347
||||
Sbjct 4305 ATAA 4308
Score = 132 bits (71), Expect = 3e-29
Identities = 96/106 (91%), Gaps = 9/106 (8%)
Strand=Plus/Plus
Query 3225 TATTGGCGCAGCAACAAATGGAAACATGAAAGAAAATgagggagaggagggagaggagag 3284
|||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 3279 TATTGGCGCAGCAACAGATGGAAACATGAAAGAAAAT---------GAGGGAGAGGAGAG 3329
Query 3285 TTGTCGATCATCTATGGAAGAAGAGGGAGATGCTACTTCTGATATT 3330
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3330 TTGTCGATCATCTATGGAAGAAGAGGGAGATGCTACTTCTGATATT 3375
Score = 108 bits (58), Expect = 4e-22
Identities = 58/58 (100%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 3366 GGGAGAGGAGAGTTGTCGATCATCTATGGAAGAAGAGGGAGATGCTACTTCTGATATT 3423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3225 GGGAGAGGAGAGTTGTCGATCATCTATGGAAGAAGAGGGAGATGCTACTTCTGATATT 3282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 164408715360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5