BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75330.1
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476678 jgi|Araly1|476678|fgenesh2_kg.2__1808__AT1G75330.1 2097 0.0
> Ahg476678 jgi|Araly1|476678|fgenesh2_kg.2__1808__AT1G75330.1
Length=1343
Score = 2097 bits (1135), Expect = 0.0
Identities = 1278/1347 (95%), Gaps = 10/1347 (1%)
Strand=Plus/Plus
Query 15 CTCTGAATTAAGACGATGGCGGCTGCAATGGCTTCTCATGTTTCGACGGCTCGATCACCG 74
||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 CTCCGAATTCAGACGATGGCGGCTGCAATGGCTTCTCACGTTTCGACGGCTCGATCACCT 60
Query 75 GCtctttccttctcttcttcgtcttcctccttcttccCCGGTACTACTCTTCGGAGATTC 134
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 61 GCTCTTTCCTTCTCTTCTTCGTCATCCTCCTTCTTCCCCGGCACTACTCTCCGGAGATTC 120
Query 135 TCCGCCGTTTCACTCCCTTCTCCTGCTCTCCCTCGCCTTCGTGTTTCATGTCAAGCCTCC 194
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 121 TCCGCCGTTTCACTCCCTTCTCCGGCCCTCCCTCGCCTTCGTGTTTCTTGTCAAGCCTCC 180
Query 195 TCCGTCACTTCGCCTTCTTCTCCTTCCGATGTCAAAGGAAAATCTGACCTGAAAGACTTT 254
||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||
Sbjct 181 TCCGTCACTTCGCCTTCTTCTACTTCCGATGCCAAAGGAAAGTCTGACCTGAAAGACTTT 240
Query 255 CTGGCAATAGATGATTTTGACACAGCCACCATTAAAACGATTTTAGACAAGGCTTCAGAG 314
||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 241 CTGGCCATAGATGATTTTGACACAGCCACCATAAAAAAGATTTTAGACAAGGCTTCAGAG 300
Query 315 GTTAAGGCCTTGCTGAAATCAGGGGAGAGAAATTATCTACCTTTTAAAGGGAAGTCTATG 374
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTAAGGCCTTGCTTAAATCAGGAGAGAGAAATTATCTACCTTTTAAAGGGAAGTCTATG 360
Query 375 TCTATGATCTTTGCAAAACCTTCCATGAGGACTCGGGTTTCGTTTGAGACTGGTTTTTTC 434
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 361 TCTATGATCTTTGCTAAACCCTCCATGAGGACTCGGGTTTCTTTTGAGACTGGTTTTTTC 420
Query 435 TTGCTCGGTGGCCATGCGTTATATCTAGGTCCCAATGACATTCAGATGGGTAAGCGGGAG 494
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 TTGCTTGGTGGCCATGCGTTATATCTAGGACCCAATGACATTCAGATGGGTAAGCGGGAG 480
Query 495 GAAACTCGTGATGTTGCTCGTGTTCTTTCACGCTATAATGACATCATTATGGCTCGTGTA 554
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GAAACTCGTGATGTTGCTCGTGTTCTCTCACGCTATAATGACATCATTATGGCTCGTGTA 540
Query 555 TTTGCTCATCAGGACATTCTTGATTTGGCTAACTACTCGAGTGTACCAGTTGTCAATGGT 614
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTGCTCATCAGGACATCCTTGATTTGGCTAACTACTCGAGTGTACCAGTTGTCAATGGT 600
Query 615 CTGACTGATCATAACCATCCTTGCCAAATCATGGCCGATGCCCTCACAATGATAGAGCAC 674
||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 601 CTGACAGATCATAACCATCCTTGCCAAATCATGGCTGATGCCCTCACAATAATTGAGCAC 660
Query 675 ATTGGTCAAGTTGAAGGGACAAAGGTTGTGTATGTTGGAGATGGGAACAACATGGTTCAC 734
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 ATCGGTCAAGTCGAAGGGACAAAGGTTGTGTATGTTGGAGATGGGAACAACATGGTACAC 720
Query 735 TCTTGGTTAGAATTGGCATCCGTTATTCCATTCCACTTTGTCTGCGCTTGCCCAAAAGGG 794
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 TCTTGGTTAGAATTGGCATCCGTTATTCCTTTCCACTTTGTCTGCGCTTGCCCAAAAGGG 780
Query 795 TATGAACCAGACAAAGAAAGAGTTTCAAAGGCAAAGCAAGCTGGATTAAGTAAGATAGAG 854
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 TATGAACCAGACAAAGAAAGAGTTTCAAAGGCAAAGCAAGCTGGCTTAAGTAAGATAGAG 840
Query 855 ATCACCAATGATCCTAAAGAAGCTGTTATTGGAGCAGATGTTGTGTACTCAGACGTATGG 914
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 ATCACCAATGATCCTAAAGAAGCTGTTATTGGAGCTGATGTTGTGTACTCAGACGTATGG 900
Query 915 GCCAGTATGGGTCAAAAGGATGAAGCCGAAGCTCGCCGGAAAGCATTCCAAGGATTCCAG 974
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 GCCAGTATGGGGCAAAAGGATGAAGCCGAAGCTCGCCGTAAAGCATTCCAAGGATTCCAG 960
Query 975 GTGGATGAAGCTCTGATGAAGTTGGCGGGTCAAAAAGCCTATTTCATGCATTGTTTGCCT 1034
|||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 961 GTGGATGAAGCTCTTATGAAGTTGGCGGGTCCAAAAGCCTACTTCATGCATTGTTTGCCT 1020
Query 1035 GCAGAGAGAGGAGTTGAGGTGACCAATGGAGTCGTAGAGGCTCCTTATTCCATTGTCTTT 1094
||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1021 GCAGAAAGAGGAGTGGAGGTGACTAATGGAGTCGTGGAGGCTCCTTATTCCATTGTCTTT 1080
Query 1095 CCACAGGCGGAGAATCGCATGCATGCTCAAAATGCTATAATGCTTCACTTGCTCGGCTTT 1154
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1081 CCACAGGCGGAGAATCGCATGCATGCCCAAAATGCAATAATGCTTCATTTGCTCGGCTTT 1140
Query 1155 TAAACCTCTTTGTTATCTTAGCTCTCGCATGCGGTTGGTTCGTGTACCACATT-GACTTA 1213
|||||||||||||||||||||||||| ||||||||| | | ||||||| | || ||||||
Sbjct 1141 TAAACCTCTTTGTTATCTTAGCTCTCTCATGCGGTTTGCTGGTGTACC-C-TTCGACTTA 1198
Query 1214 ATAATGTACTA-T-TT-ATTAACCTTAGTTTGAGAAACCGTATGATGAATAAGATTTGTG 1270
||||||||||| | || |||||||||||||||||||||| | |||||||||| |||||||
Sbjct 1199 ATAATGTACTAGTATTTATTAACCTTAGTTTGAGAAACC-T-TGATGAATAATATTTGTG 1256
Query 1271 GCTGATTCAGCTGGGAATATGAATGAGCTACTTTTCTATATATGACACATA-GT-TATAA 1328
||||||| ||||||||||||||||||||| ||||| |||||||||| |||| | ||| |
Sbjct 1257 GCTGATTAAGCTGGGAATATGAATGAGCTTCTTTTATATATATGACCCATATGGATATCA 1316
Query 1329 ATATTTATAACTAGTTATTACATCTCT 1355
||||||||||||||||| |||||||||
Sbjct 1317 ATATTTATAACTAGTTACTACATCTCT 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50703479610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5