BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75340.1
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476679 jgi|Araly1|476679|fgenesh2_kg.2__1809__AT1G75340.1 2085 0.0
> Ahg476679 jgi|Araly1|476679|fgenesh2_kg.2__1809__AT1G75340.1
Length=1517
Score = 2085 bits (1129), Expect = 0.0
Identities = 1401/1527 (92%), Gaps = 40/1527 (3%)
Strand=Plus/Plus
Query 57 GAAGGTTTTAGCTGCGAGTATGAGGAAGGAACTGTGTAGAAACTTTCAGCGTGGCAGTTG 116
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 GAAGTTTTTAGCAGCGAGTATGAGGAAGGAACTGTGTAGAAACTTTCAGCGTGGAAGTTG 60
Query 117 TAGGTATGGGGAAAACTGTAGATTTCTTCATCCACAACAAGCTAAGCCAAATAATCCCTT 176
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TAGGTATGGGGAAAATTGTAGATTTCTTCATCCACAACAAGCTAAGCCAAATAATCCCTT 120
Query 177 TGGCTTTGGTacacaaaaccaacaacaacaacagcagcagcagcaacaaaaTAGTTCGAA 236
|||||||||||||| || ||||| | |||||| || || |||||||| |||||||| ||
Sbjct 121 TGGCTTTGGTACAC--AA-CAACAGCCACAACAACAACAACAGCAACAGAATAGTTCTAA 177
Query 237 CCCTTTTGGATTTGGTGTACAAAGTGGTGGTTCCAGCAGACCGAATCAGTT----CC--- 289
||||||||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct 178 TCCTTTTGGATTTGGTGTACAAGGTGGTGGTTCCAGCAGACCGAATCAATTCCAGCCTTT 237
Query 290 --AGAATACTTGGTCACGAACGGCTTCTACACCTACTGGTGGTGGTGCTGCTGCTTCTAC 347
||||||| |||||| ||||||||||||||||||||| |||||||| ||||||| || |
Sbjct 238 TGAGAATACATGGTCAAGAACGGCTTCTACACCTACTGCTGGTGGTGGTGCTGCTGCTGC 297
Query 348 ACAGCAGACTGGTAAACAGACGCAGCCGGCAGATCATAAATGCACAGATCCTGCTGCGTG 407
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 298 GCAGCAGGCTGGTAAACAGACGCAGCCGGCAGACCATAAATGCACAGATCCTGCTGCGTG 357
Query 408 TAAGCGGGTAATGCAAGACGATTTTAAGAATGAGAGACCCATGTGGAAGCTCACATGCTA 467
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 358 TAAGCGGGTAATGCAAGACGATTTTAAAAATGAGAGACCCATGTGGAAGCTCACATGCTA 417
Query 468 CGGCCACTGGAAATATTTTCCATGTGATGTTACCGGTGATATCAGCTATGAAGAACTACG 527
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 418 CGGCCACTGGAAATATTTTCCATGTGATGTTATGGGTGATATCAGCTATGAAGAGCTACG 477
Query 528 TGCAGTGGCATATGAAGAAGCTAAACGAGGAATACCTCTACAGTCGATTGTTGAAAGGGA 587
|||| |||| || ||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 478 TGCAATGGCGTACGAAGAGGCTAAACGAGGGATACCTCTACAGTCGATTGTTGAGAGGGA 537
Query 588 GAGGAATCTGCAAAATTCCAAAATAGCCGAGTTTGAAAACTTTCTACGGAATCCATACAA 647
||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 538 GAGGAATCTGCAAAACTCCAAAATAGCTGAGTTTGAAAACTTTCTGCGGAATCCATACAA 597
Query 648 AGGCTCTGTTACCGCCAATCAAAGCCCGTTTGCTGCAACCACTCCTAGTATCTTCCCTCA 707
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 598 AGGCTCTGTTACCGCCAATCAAAACCCGTTTGCTGCAACCACTCCTAGTATCTTCCCACC 657
Query 708 GTCCAGTCAGATCAATTCCCCTTCTCCAGCATTCTCTGGCTTTAATCAACAAACTGCATT 767
| | |||||||||||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 658 GACTGGTCAGATCAATTCCTCTCCTCCAGGATTCTCTGGCTTTAATCAACAAACTGCATT 717
Query 768 CTCCAATACCAATGCGGGTGGACTCAGTTCATCTGGACCTCCGAATGCCTTTGCAAG--- 824
| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CCCCAATACCAATACTGGTGGACTCAGTTCATCTGGACCTCCGAATGCCTTTGCAAGCTT 777
Query 825 C--T------TC----AATCAACAAACTACATTCCCCAATACCAATGCTGGTGGAGTCAG 872
| | || |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 778 CAATCAACAATCAAATAATCAACAAACTACCTTCCCCAATACCAATGCTGGTGGAGTTAG 837
Query 873 TTCATCTGGACCTCCGAACCCCTTTGCAAGCTTTACTCAACAATCAAATAATCAACAAAC 932
|||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct 838 TTCATCTGGACCTCCGAATCCCTTTGCAAGCTTTAATCAACAATCGAATAATCAACAAAC 897
Query 933 TGCATTCTCCAATACCAACGCTGGTGGTCTCAGTTCATCTGGACCTCCGAATGCCTTTGC 992
||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 898 TGCATTCCCCAATACCAATGCTGGTGGACTCAGTTCATCAGGACCTCCGAATGCCTTTGC 957
Query 993 AAGCTTTAATAAACAACCAAATGCTTTCAGCGTCAACACTCCTCAACCTGTTCCTTCAGG 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAGCTTTAATAAACAACCAAATGCTTTCAGCGTCAACACTCCTCAACCTGTTCCTTCAGG 1017
Query 1053 TCCCTCTGGTTTCCAAACCAATCCATCAACAACATTCAAACCAGCATCATTTGGACCTGG 1112
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TCCCTCTGGTTTCCAAACCCATCCATCAACAACATTCAAACCAGCATCATTTGGACCTGG 1077
Query 1113 ACCCGGATTTGCCACAACTCCACAAAACAATAACATCTTTGGTCAATCAACTCCAACACC 1172
||| || | |||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1078 ACCTGGGCTCGCCACAACTCCACAAAACAATAACATCTTTGGTCCATCAACTCCAACGCC 1137
Query 1173 GGCTACAAACACTTCCCAGAACAATCAGACCGCATTCAACTTCAATGTCCCTGTTGCATC 1232
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GGCTCCCAACACTTCCCAGAACAATCAGACCGCATTCAACTTCAATGTCCCTGTTGCATC 1197
Query 1233 TTTTACTGCTCCTGCTATAAACACGACAAATACATCTTCCGGAACCGAGCTGCAAATAGG 1292
||| ||||| |||||| || |||| ||||||||||||||||||| |||||||||||||||
Sbjct 1198 TTTCACTGCCCCTGCTGTAGACACAACAAATACATCTTCCGGAAACGAGCTGCAAATAGG 1257
Query 1293 TGGTGATCCTGTTGATAGTAGTATCTGGCTAAAGGAGAAATGGAATCCAGGGGAGATTCC 1352
|| |||||||||||||||| |||||| |||||||||||||||||||||||||||| ||
Sbjct 1258 TG---ATCCTGTTGATAGTAGCATCTGGTTAAAGGAGAAATGGAATCCAGGGGAGATCCC 1314
Query 1353 GGAACAAGCGCCGCCTGATGCCTTTGTTTAACAATATGAAGA-ATGTCATTGAAACAATT 1411
||| |||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1315 GGAGCAAGCGCCGCCTGATGCCTTTGTTTAACAATATGAAAAGA-GTCATTGAAACAATT 1373
Query 1412 ACGTATAGGCCAGA-GTCGCAAATTGGCGCAGAAGA-GTTGTTTTTTCTTGGTCAT---C 1466
|||||||||| | | ||| ||||||||||||||| | |||||||||| || ||||| |
Sbjct 1374 ACGTATAGGCTA-ATGTCTCAAATTGGCGCAGAA-ACGTTGTTTTTTTTTTGTCATTAAC 1431
Query 1467 TCAGATTTGTGACCAATGTAGTTTCTCCACAAAATCCAAAGTTTTGAACCTTAACAATAA 1526
||||||||||||||||||||| |||||||||||| |||||||| |||| ||||||||||
Sbjct 1432 ACAGATTTGTGACCAATGTAGTGTCTCCACAAAATGCAAAGTTT-GAACTTTAACAATAA 1490
Query 1527 TTTCAATGCAGATAACAGAAACTATAA 1553
||||||||||||||||||||||| |||
Sbjct 1491 TTTCAATGCAGATAACAGAAACTGTAA 1517
Score = 135 bits (73), Expect = 7e-31
Identities = 87/94 (93%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 921 TAATCAACAAACTGCATTCTCCAATACCAACGCTGGTGGTCTCAGTTCATCTGGACCTCC 980
||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||
Sbjct 700 TAATCAACAAACTGCATTCCCCAATACCAATACTGGTGGACTCAGTTCATCTGGACCTCC 759
Query 981 GAATGCCTTTGCAAGCTTTAATAAACAACCAAAT 1014
|||||||||||||||||| ||| ||||| |||||
Sbjct 760 GAATGCCTTTGCAAGCTTCAATCAACAATCAAAT 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5