BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75360.1
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476681 jgi|Araly1|476681|fgenesh2_kg.2__1811__AT1G75360.1 1042 0.0
> Ahg476681 jgi|Araly1|476681|fgenesh2_kg.2__1811__AT1G75360.1
Length=1311
Score = 1042 bits (564), Expect = 0.0
Identities = 812/926 (88%), Gaps = 40/926 (4%)
Strand=Plus/Plus
Query 470 aaaaacagagcgcgtaaaaaccaaaa-aaTGGAGAAGCCGTTCGAATTCCATGGCGTGGA 528
|||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 400 AAAAACAGAGCGAGTAAAAA-AAAAAGAATGGTGAAGCCGTTCGAATTCCATGGCGTGGA 458
Query 529 GGCGGAGAAAGCGGAAGCGATGAGGAGATACAACAACCGTAGAAGCTTCAGAGGCATTCT 588
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct 459 GGCGGAGAAAGCGGAAGCAATGAGGAGATACAACAACCGTAGAAGCTTCAGAAACATTAT 518
Query 589 TCGTTTAGTCGGCGTAGCTTTTCTGTGTTACTTATGGTTCCCGACGGTGGCGATTAT-AC 647
||||||| || |||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 519 ACGTTTAGCCGCCGTAGCTTCGCTGTGTTACTTATGGTTCCCGACGGTGGCGATT-TCAC 577
Query 648 TACAAACCGTCGGCGACTGGATTTATTGGACCGGAGCGGTTTTAATAACCGATCGTTCCG 707
||||||| | |||||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct 578 TACAAACTGCCGGCGACTGGTTTTACCGGACCGGAGCGGTTTTTATAACCGATCGTTCCG 637
Query 708 TCGTCTTTTTCTTCGCTAACCTAATCGTCGGTTTGA-TTTTCTTTCTCTCCGGCGAGAGT 766
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 638 TCGTCTTCGTCTTCGCTAACCTAATCGTCGGTTT-ACTTTTCTTTCTCTCCGGCGAGAGC 696
Query 767 AACAAC--GAG-AGTAGTAGTAGTAATGTCGAAACAGAACCAGATCTCTACGATCAATAC 823
|||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 697 AACAACGAGAGTAGTAGTAGTAGTAATGTTGAACCAGAACCAGATCTCTACGATCAATAC 756
Query 824 ACCTCTTCTTTCTCCACCGTGATCGCAAACGCCTCCGCCGCGAAAGT--T----GATGAT 877
|||||||||| |||| |||| |||| || |||| || || |||||| | ||||||
Sbjct 757 ACCTCTTCTTCCTCCGCCGTAATCGTAACCGCCGACGACGAGAAAGTGGTAGAAGATGAT 816
Query 878 -A--ATGATTCGAACAAGCAAATCGTTCCGACGTTTAACGCGGAGGTTGATGAGGCGGTT 934
| |||||| | | ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 817 GATGATGATTTGCATAAGCAAATCGTTCCGGCGTTTAACGCGGAGGTTGAGGAGGCGGTT 876
Query 935 AAGACAAAACG-AATTTCTAGGAGGACTAAATCGGAGATATGCCGGCCGGCAATGGAGTA 993
| ||||||| | ||||| ||||||||| |||||||||| || |||||||| ||||||||
Sbjct 877 ACGACAAAA-GAAATTTATAGGAGGACGAAATCGGAGACATTCCGGCCGGTGATGGAGTA 935
Query 994 TGAGAGAACGGAGTCGGAGAAAGTGGTGGAAGACGATGAATCGGAGAAGCAAATCGTTCC 1053
| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 936 TCAGAGAACAGAGTCGGAGAAAGTGGTGGAAGACGATGAATCGGAGAAGCGAATCGTTCC 995
Query 1054 GGCGTATT--TCCCAGAGGATGATGAGGAAGTGGTAGTGGATGAGGCTAATCGGGAGATG 1111
||||| || ||| |||||||| | | ||||||| |||||||||||| ||||||| ||
Sbjct 996 GGCGT-TTAATCCG-GAGGATGA-G-G-AAGTGGTTTTGGATGAGGCTACTCGGGAGGTG 1050
Query 1112 GTTACAACACCGGGAATTTATAGGAGGACGAAATCGGAGACGAAGAAAGAGATAATCCGG 1171
|||||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct 1051 GTTACATCACCGGGAATTTATAGGAGGACGAAATCGGAAACGAGGAAAGAGATGATCCGG 1110
Query 1172 CCGGTGATAGAG-ATTCGGAGAACGGAATCGGCGAAAGAGGTGCCGATAGATAGGCTGAG 1230
|||||| | ||| || |||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1111 CCGGTGGTGGAGCAT-CGGAGAACGGAATCGGCGAAAGTGGTGGCGATAGATAGGCTGAG 1169
Query 1231 TAGTGAAGAGTTTCGTTTGGTGGTAGAGAGTTTCTTGAAAACGCAGAAGAAGAGAGCACG 1290
||||||||||||||||||| | ||||||||||| | || | ||||||||||| | |
Sbjct 1170 TAGTGAAGAGTTTCGTTTGAAGATAGAGAGTTTCAT-AATG-G-AGAAGAAGAGATCGCT 1226
Query 1291 TGATTCGG-AAAACGACACCGTTCGATGTCATGTACTTGGATCTAGACCTGGCCTCATTG 1349
|| ||||| ||||||||| ||||| |||||| |||||||| ||||||||||||||| |||
Sbjct 1227 TG-TTCGGGAAAACGACATCGTTCAATGTCAAGTACTTGGGTCTAGACCTGGCCTCGTTG 1285
Query 1350 GT-G----G-CTATGGCTCGTGCTAG 1369
|| | | ||||||||||||||||
Sbjct 1286 GTAGTACTGGCTATGGCTCGTGCTAG 1311
Score = 287 bits (155), Expect = 2e-76
Identities = 334/409 (82%), Gaps = 57/409 (14%)
Strand=Plus/Plus
Query 1 AAACTAATCATTGTTTTCATAGGA-A-GAGAGACAAAAC-----AA-A-CAAAGTATTCT 51
||||||||||||||||||||| || | | |||||||||| || | |||||||||||
Sbjct 1 AAACTAATCATTGTTTTCATA-GACAGGGGAGACAAAACTTTTTAAGATCAAAGTATTCT 59
Query 52 CTAGGTTCTTTTCTAAATTTTGAATACTAAAGAAAACCAAAAGAACCATTACTATAT-GT 110
||||||||||||||||||||| |||||||||||||||| || || ||| ||| | ||
Sbjct 60 CTAGGTTCTTTTCTAAATTTT-AATACTAAAGAAAACC--AA-AA-TATTGTTAT-TGGT 113
Query 111 T-TGTACTATTATCATTGGTTGGGTGTCCAAAAAGCAAAACCATAGTATAAA-ATTAAAT 168
| || | | || | || | | ||||| |||| | | | ||| | | ||
Sbjct 114 TCGGT-GT-CCA-CA-TAATT--ATAT--AAAAA--AAAA--A-A--A-AAACA-T-AA- 154
Query 169 TGTCAAAAAAGAGTCATTAAATTTTAACTTATTGAGGATATATAAAAAGACTAGTCCTGC 228
| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 155 CG--AAAAAAGAGTCATTAAATTTTAACTTATTGAGGATATATAAAAAGACCAGTGCTGT 212
Query 229 GATCGTATTTCCGTATCA--GTGTCAGTGTATCTCCTTCTTACAATAAAATATTTTCTCT 286
|||||||||||||||||| ||||||||||| || | | |||||||||||
Sbjct 213 GATCGTATTTCCGTATCAGTGTGTCAGTGTA------TC-T-C------ATATTTTCTCT 258
Query 287 CATTTAACAAAATCGCTTCACTTTCCCGATTCAATTTTCCCGGAAAATATCACTTTCCCG 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 CATTTAACAAAATCGCTTCACTTTCCCGATTCAATTTTCCCGGAAAATATCACTTTCCCG 318
Query 347 TTTCATTTTCCCAGAATAA-TCCAAATCTCCATCGTAATCAATTTCTCA 394
||||||||||||||||||| || |||||||||||||||| |||||||||
Sbjct 319 TTTCATTTTCCCAGAATAAATCAAAATCTCCATCGTAATTAATTTCTCA 367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52450267365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5