BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75370.2
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476682 jgi|Araly1|476682|fgenesh2_kg.2__1812__AT1G75370.1 3016 0.0
> Ahg476682 jgi|Araly1|476682|fgenesh2_kg.2__1812__AT1G75370.1
Length=2124
Score = 3016 bits (1633), Expect = 0.0
Identities = 1759/1821 (97%), Gaps = 4/1821 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGGCTCTCTTGATCGATTTGCGAGACCTTGTTTTGAAGGAGT-TTCAAGCAATGA 59
||||| ||||||||||||||||| ||||| || |||||||||||| | ||||||||||||
Sbjct 94 ATGTCTGGCTCTCTTGATCGATTCGCGAGGCCGTGTTTTGAAGGA-TGTTCAAGCAATGA 152
Query 60 TGAGAGAAGAGAAAGGAGATCAGATTTCGAAGTTTCAGAGGATGAGAAGAAGACAAGAAT 119
||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 153 TGAGAGAAGAGAACGGAGATCAGATTTCGAAGTTTCTGAGGATGAGAAGAAAACAAGAAT 212
Query 120 CGGGAATTTCAATTTCAAGAAGAAAGCTGCGAAAGCTTCGAGCAAACTCAGACATTCGTT 179
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 213 CGGGAATTTCAATTTCAAGAAGAAAGCTGCGAAAGCTTCAAGCAAACTTAGACATTCGTT 272
Query 180 GAAGAAGAAAGGTAGCAGTAGGAGAAGAAGCAGTGATCGTACTTTCTCTCTTACCATTGA 239
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 273 GAAGAAGAAAGGTAGTAGTAGGAGAAGAAGCAGTGATCGTAATTTCTCTCTTACCATTGA 332
Query 240 AGATATTCATGATGTTGAGGAATTGCGAGCTGTTGATGAATTCCGTAATTTACTCGTCTC 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 AGATATTCACGATGTTGAGGAATTGCGAGCTGTTGATGAATTCCGTAATTTACTCGTCTC 392
Query 300 TGAGAATTTGCTTCCTCCTACACTTGATGATTATCACATCATGCTGAGATTCTTGAAAGC 359
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 393 TGAGAATTTGCTTCCTCCTACACTTGATGATTATCACATTATGTTGAGATTCTTGAAAGC 452
Query 360 TAGGAAATTTGATATTGGGAAAACCAAGTTAATGTGGAGTAATATGA-TCAAATGGAGAA 418
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 453 TAGGAAATTTGATATTGGGAAAACCAAGTTAATGTGGAGTAATATGATTC-AATGGAGAA 511
Query 419 AAGATTTTGGTACTGACACCATTTTCGAGGATTTTGAATTTGAAGAGTTTGATGAAGTTC 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 AAGATTTTGGTACTGACACCATTTTCGAGGATTTTGAATTTGAAGAGTTTGATGAAGTTA 571
Query 479 TGAAATACTACCCTCATGGTTATCATGGTGTTGATAAAGAAGGAAGGCCTGTTTACATTG 538
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 572 TGAAATACTACCCTCATGGTTATCATGGTGTTGACAAAGAAGGAAGACCTGTTTACATTG 631
Query 539 AAAGATTAGGACTAGTTGATCCGGCCAAGCTCATGCAAGTCACTACAGTGGAAAGATTCA 598
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 632 AAAGATTAGGACTAGTTGATCCGGCCAAGCTCATGCAAGTCACTACGGCCGAAAGATTCA 691
Query 599 TAAGGTATCATGTTCGAGAGTTTGAGAAAACTGTCAACATAAAGCTTCCAGCTTGCTGCA 658
||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||
Sbjct 692 TAAGGTATCATGTTCGAGAGTTTGAAAAAACTATCAACATTAAGCTTCCAGCTTGCTGCA 751
Query 659 TTGCTGCTAAGAGACATATTGACTCTAGCACAACAATTCTAGATGTCCAAGGCGTGGGGT 718
|||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 752 TTGCTGCTAAGAGACACATTGACTCTAGTACAACAATTCTAGACGTCCAAGGCGTGGGGT 811
Query 719 TCAAGAATTTCTCTAAGCCTGCGAGGGATCTCATAATCCAGCTGCAAAAGATTGATAACG 778
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 812 TCAAGAATTTCTCTAAGCCTGCGAGGGATCTCATAATACAGCTGCAAAAGATTGATAATG 871
Query 779 ATAACTACCCTGAGACACTTCATCGTATGTTCATCATCAATGGTGGTTCTGGTTTTAAGC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 ATAACTACCCTGAGACACTTCATCGTATGTTCATCATCAATGGTGGTTCTGGTTTTAAGC 931
Query 839 TAGTCTGGGCCACAGTGAAACAGTTTCTTGATCCAAAAACAGTCACGAAGATTCATGTCA 898
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 932 TAGTTTGGGCCACAGTGAAACAATTTCTTGATCCAAAAACGGTCACGAAGATTCATGTCA 991
Query 899 TTGGTAACAAGTACCAAAACAAACTACTTGAGATCATTGATGCAAGCCAGCTGCCAGATT 958
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 992 TTGGTAACAAGTACCAAAACAAATTACTTGAGATAATTGATGCAAGCCAGCTGCCAGATT 1051
Query 959 TTCTTGGTGGCACTTGCACCTGTGCAGATCGAGGTGGTTGTATGAGATCTGATAAAGGCC 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1052 TTCTTGGTGGCACTTGCACCTGTGCAGATCGAGGTGGTTGTATGAGATCTGATAAAGGGC 1111
Query 1019 CCTGGAATGACCCTGAGATATTAAAGATGCTTCAAAGTGGTGGACCGCTCTGCAGGCATA 1078
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1112 CCTGGAATGACCCTGAGATATTAAAGATGCTTCAAAGTGGTGGACCGCTTTGCAGGCATA 1171
Query 1079 ATTCGGCTCTAAACAGTTTTTCCCGTGTGTCTTCATGCGATAAGCCATCTTTTTCTGGGA 1138
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1172 ATTCGGCTCTAAACAGTTTTTCCCGTGTGTCCTCATGCGATAAGCCATCTTTTTCTGGGA 1231
Query 1139 TAAAAGCTAGTGACACCTCGACAGCAGAATCAGGGTCTGAAGTGGAAGAGATGGCTTCTC 1198
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 TAAAAGTTAGTGACACCTCGACAGCAGAATCAGGGTCTGAAGTGGAAGAGATGGCTTCTC 1291
Query 1199 CAAAAGTAAATAGAGAGCTTCGTGTTCCCAAGCTGACTCCTGTTTGTGAAGATATTAGGG 1258
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1292 CAAAAGTAAATAGAGAGATTCGTGTTCCCAAGCTGACTCCTGTTTGTGAAGATATTTGGG 1351
Query 1259 GCACTGCTATATCATATCCTACTGACTCATCAGAGTATGATTCACCAATGGTGGACAAAG 1318
|| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1352 CCAATACTATATCATATCCTACTGATTCATCAGAGTATGATTCACCAATGGTGGACAAAG 1411
Query 1319 TCGTGGATGTTGCTTGGATGGCCCATGAAAAGCCAAAGGCTTCAAAAGGTTCAGAGGATA 1378
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1412 TTGTGGATGTTGCTTGGATGGCCCATGAAAAGCCAAAGGCTTCAAAAGGTTCAGAGTATA 1471
Query 1379 CACCCGATTCGGGCAAAATAAGAACGGTTACTTATATCTGGAGGTGGCTAATGATGTTCT 1438
||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1472 CACCCGATTTGGGCAAAATAGGATCGGTTACTTATATCTGGAGGTGGCTAATGATGTTCT 1531
Query 1439 TTGTAAACTTGTTTACGCTTCTCATATCTTTGGCTCTGCCACAGAGAGAAGGACACTCCC 1498
| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1532 TCGTTAACTTGTTTACGCTTCTCATATCTGTGGCTCTGCCACAGAGTGAAGGACACTCCC 1591
Query 1499 AGTCTGAATCTTCAGTTGATGGACCAAACGCTAGAGAGTCTCGTCCTCCTTCACCGGCTT 1558
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 AGTCTGAATCTTCAGGTGATGGACCAAACGCTAGAGAGTCTCGTCCTCCTTCACCGGCTT 1651
Query 1559 TTGCAACTATCGCAGAGAGAAATGTGTTTTCTTCTGTTGTAAACAGACTAGGAGATCTTG 1618
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 TTGCAACTATGGCAGAGAGAAATGTGTTTTCTTCTGTTGTAAACAGACTAGGAGATCTTG 1711
Query 1619 AGAAACAGGTAGAAACACTGCACTCGAAGCGTCATGAGATGCCGCGTGAGAAAGAGGAGT 1678
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1712 AGAAACAGGTAGAAACACTGCACTCGAAGCGACATGAGATGCCTCGTGAGAAAGAGGAGT 1771
Query 1679 TGCTTAATACAGCTGTTTATCGCGTGGATGCACTTGAAGCAGAGCTCATCGCTACAAAAA 1738
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 TGCTTAACACAGCTGTTTATCGCGTGGATGCACTTGAAGCAGAGCTCATCGCTACAAAAA 1831
Query 1739 AGGCTTTACATGAGGCTTTAATGAGACAAGATGATCTTTTGGCTTACATAGACCGTGAAG 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 AGGCTTTACATGAGGCTTTAATGAGACAAGATGATCTTTTGGCTTACATAGACCGTGAAG 1891
Query 1799 AAGACGAGAAGTATCACAAGA 1819
|||| ||||||||||||||||
Sbjct 1892 AAGATGAGAAGTATCACAAGA 1912
Score = 124 bits (67), Expect = 2e-27
Identities = 83/90 (92%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 1864 TTCGTAAACACCA-ACCCTATAGAGAGAACAATGTTTATATCCAAAATTAGGTCTCATAA 1922
||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 2008 TTCGT-ATCACCACCCCCTATAGAGAGAACAATGTTTATATCCAAATTTAGGTCTCCTAA 2066
Query 1923 GCAAAGATTTGATACTTTTGGGGGAAATTT 1952
|||||||||| |||||||||||||||||||
Sbjct 2067 GCAAAGATTT-ATACTTTTGGGGGAAATTT 2095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75456775345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5