BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75380.1
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476684 jgi|Araly1|476684|fgenesh2_kg.2__1814__AT1G75380.2 1842 0.0
Ahg472192 jgi|Araly1|472192|fgenesh2_kg.1__2146__AT1G19660.1 913 0.0
> Ahg476684 jgi|Araly1|476684|fgenesh2_kg.2__1814__AT1G75380.2
Length=1431
Score = 1842 bits (997), Expect = 0.0
Identities = 1104/1156 (96%), Gaps = 5/1156 (0%)
Strand=Plus/Plus
Query 3 tctctcaagtgaagaatctctctctatctctatcttcttccattgatcctttcctctctc 62
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCAAGTGAAGAATCTCTCTCTATCTCTATCTTCTTCCATTGATCCTTTCCTCTCTT 60
Query 63 tGGCTTGTTTCAGAGCTCTTCGATCTTCTTCTTGATCGATCTACGTGCCACTGTTTATAC 122
|||||||| || |||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 61 TGGCTTGTGTCGGAGCTCTTCGATCTTCTTCTTGATCGATCTACGTGCGACTGTTTGTAC 120
Query 123 CATTCACGATCTAATCCGGTTTCAATTATTACTCACGAAATCG-AAGGAAGATGAGATCG 181
||||||||||||| |||| || ||||| || || || ||| | ||| ||||||| ||||
Sbjct 121 CATTCACGATCTATTCCGATTCCAATTGTTGCTTACTAAA-AGAAAGAAAGATGAAATCG 179
Query 182 GTTCAAGCACCAGTTGTTTGTCCTGCAATTCGACCAAGACAAGTAGGTGCATGTGCTTCA 241
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 CTTCAAGCACCAGTTGTTTGTCCTGCAATTCGTCCAAGACAAGTAGGTGCATGTGCTTCA 239
Query 242 CTAGTCAACTACACTGGTCTGAAACCTAGAAGCCAATTTTGGGGTAATCGGACAAAAGGT 301
|| || |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 240 CTTGTTAACTACACTGGTCTGAAACCTAGAAGACAATTCTGGGGTAATCGGACAAAAGGT 299
Query 302 GTCAAGTCTCAGGGCACTACCACAACAATCACTCTTAGATTGTGCAACAAGAGTATCAAG 361
||||||||||||| | ||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 300 TTCAAGTCTCAGGG--C-ACCACCACAATCACTCTTAGATTGTGCGACAAGAGTATCAAG 356
Query 362 TGTGTTTTCAGCTCTCACTCTGATGGTAATGGAAGCACTGCTGAAAATTTCAATGAAAAT 421
||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||
Sbjct 357 TGTGTTTTCAGCTCTCACTCTGATGGTAATGGAAGCACTGCAGAGAATTTTAATGAGAAT 416
Query 422 GATGAGGAATATGTTAACTCTAGTGTAGTGGAAGCTGTTGAAGTAAAAAGTGGAGCAGAT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GATGAGGAATATGTTAACTCTAGTGTAGTGGAAGCTGTTGAAGTAAAAAGTGGAGCAGAT 476
Query 482 GGTTTTATGGTGAAGATGAGGGATGGTAGGCAACTACGATGTGTCCATAACAATCCTCAA 541
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 477 GGTTTCATGGTGAAGATGAGGGATGGTAGACAACTACGATGTGTCCATAACAATCCTCAA 536
Query 542 GGAGGGCATTTACCAGATTATGCTCCACACCCTGCTATTGTCTTGAAAATGGAAGATGGA 601
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 537 GGAGGGCATTTACCAGATTATGCTCCTCACCCTGCTATTGTGTTGAAAATGGAAGATGGA 596
Query 602 ACTGGTCTTCTCCTTCCGATTATCGTCTTGGAGATGCCTAGTGTGTTACTTATGGCAGCA 661
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 597 ACTGGTCTTCTCCTTCCCATTATCGTGTTGGAGATGCCTAGTGTGTTACTTATGGCAGCA 656
Query 662 ATGACCAATGTCCAAATTGCAAGACCAACCATGTATCAAGTGGTGAAGGAAATGGTGGAC 721
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 657 ATGACCAATGTCCAAATTGCAAGACCCACCATGTATCAAGTGGTGAAGGAGATGGTGGAC 716
Query 722 AAGATGGGTTACGAAGTTAGACTTGTTAGAGTCACCAAAAGAGTTCACGAGGCATATTTT 781
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 717 AAGATGGGTTATGAAGTTAGACTTGTTAGAGTCACCAAAAGAGTTCACGAGGCGTATTTT 776
Query 782 GCCCAGTTATTCCTTTCAAAGGTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGG 841
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCCCAGTTATACCTTTCAAAGGTGGGTAATGCCTCGGAGTGTGTCAGCTTTGATCTTAGG 836
Query 842 CCTTCAGATGCAATCAATATAGCTGTTAGATGCAAGATACCTATCCAAGTGAACAAGTAC 901
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 837 CCTTCAGATGCAATCAATATCGCTGTTAGATGCAAGATACCTATCCAAGTGAACAAGTAC 896
Query 902 CTTGCATATAGTGATGGAATGAGAGTCATTGAGTCAGGGAAGATATCAACACCGGCACCA 961
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 897 CTTGCATATAGTGATGGAATGAGAGTCATTGAGTCTGGGAAGATATCAACGCCGACACCA 956
Query 962 GCTTCAGATGGTTTATTATTTACTGAACAAGACCGACCAAATGGTCAGGCTTGTCTTGAT 1021
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 957 GCTTCAGATGGTTTATTATTTACTGAACAAGACCGACCTAATGGTCAGGCTTGTCTTGAT 1016
Query 1022 ACGAAAGAGTTCAATATTTTGAGCAAAATGATGCAAGCCGTTGATGAAGAGCGATATGAT 1081
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1017 ACGAAAGAGTTCAATATTTTGAGCAAAATGATGCAAGCTGTTGATGAAGAGCGATATGAT 1076
Query 1082 GAAGCCGCTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAACGTAACTTGAGGAAA 1141
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1077 GAAGCCGCTGAGTGGAGAGACAAGCTTGGTCAGTTTCGGGCCAAGCGTAACCTGAGGAAA 1136
Query 1142 TACACATGAGAGAGGT 1157
||||||||||||||||
Sbjct 1137 TACACATGAGAGAGGT 1152
Score = 327 bits (177), Expect = 1e-88
Identities = 226/247 (91%), Gaps = 14/247 (6%)
Strand=Plus/Plus
Query 1232 TCGATCAACAATTATTGGCTGTGTACATAAACTAAGAAGAAAGTCATTGGTCGGAATC-A 1290
|||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| |
Sbjct 1152 TCGATCAACAATTATTGGCTGTGTACAT-AATTAAGAAG-AAGTCATTGGTCGGAATCAA 1209
Query 1291 AAGTGGAGGAAGAAGCCTGAAGTGTCGTCTCTGTATGATGGAGATCGAAGAATGCTTCTG 1350
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1210 AAGTGGAGGAAGAAGCCTGAAGTGTCGTCTCTGTATGATGGAGATCGGAGAATGCTTCTG 1269
Query 1351 CACTTTACCCATTTCCCTaaaaaataaacaaaaaaaaaT-GTATAATGTATGTATGTAGC 1409
||||||||||||||||| |||||| |||||||||||||| |||||| | | |||||||
Sbjct 1270 CACTTTACCCATTTCCCAAAAAAA-AAACAAAAAAAAATTGTATAA---A-GCATGTAGC 1324
Query 1410 GTGATGTGTACATATTAC-TTA-TTAAT-C-T-ATGCAAATTAAGCTCACTCTAATTACT 1464
||||||||||||||||| ||| ||| | | | ||||||||||||||||||||||||| |
Sbjct 1325 GTGATGTGTACATATTATATTACTTATTACATTATGCAAATTAAGCTCACTCTAATTAAT 1384
Query 1465 TTTAAGT 1471
|||||||
Sbjct 1385 TTTAAGT 1391
> Ahg472192 jgi|Araly1|472192|fgenesh2_kg.1__2146__AT1G19660.1
Length=1358
Score = 913 bits (494), Expect = 0.0
Identities = 838/1001 (84%), Gaps = 35/1001 (3%)
Strand=Plus/Plus
Query 169 GAAGATGAGATCGGTTCAAGCACCAG-TTGTTTGTCCT-GCAATTCGACCAAGACAAGTA 226
||||||||| ||| |||||||||| | ||||||| ||| | |||| || |||||| |
Sbjct 114 GAAGATGAGGTCGCTTCAAGCACC-GATTGTTTGCCCTAG-TGTTCGTCCTAGACAACTG 171
Query 227 GGTG-CATGTGCTTCACTAGTCAACTACACTGGTCT-G-AAAC-------CT-AGAAGCC 275
|||| | | ||||||||||||||||| | || || | | |||| || ||| ||
Sbjct 172 GGTGTC-TCTGCTTCACTAGTCAACTGCTCT-GTTTCGAAAACTAGGAGTCTCGGAAACC 229
Query 276 AATTTTGGGGTAATCGGA-CA-AAAGGTGTCAAGTCTCAGGGCACTACCACAACAATCAC 333
|||| |||||||||| || || ||| |||||||||||||| ||| || ||||
Sbjct 230 AATTCTGGGGTAATCAGACCAGAAA--TGTCAAGTCTCAGGTTGCTA-CA-GTGAATC-T 284
Query 334 TC-TTAGATTGTGCAACAAGAGTAT-CAAGTGTGTTTTCAGCTCTCACTCTGATGGTAAT 391
|| | || || | |||||||| ||| ||| |||||||||| || ||||||||||
Sbjct 285 TCGTCGGA-GGT-C--TAAGAGTATACAA-TGTCTTTTCAGCTCGCATTCTGATGGTACC 339
Query 392 GGAAGCACTGCTGAAAATTTCAATGAAAATGATGAGGAATATGTTAACTCTAGTGTAGTG 451
|||||||| || || |||||||| || || |||||||| |||||||| ||||||||| ||
Sbjct 340 GGAAGCACAGCAGAGAATTTCAACGAGAACGATGAGGATTATGTTAAGTCTAGTGTATTG 399
Query 452 GAAGCTGTTGAAGTAAAAAGTGGAGCAGATGGTTTTATGGTGAAGATGAGGGATGGTAGG 511
||||||||||| ||||| |||||| |||||||||| ||||||||||||| ||||| |||
Sbjct 400 GAAGCTGTTGAGGTAAAGAGTGGACCAGATGGTTTCATGGTGAAGATGAAAGATGGGAGG 459
Query 512 CAACTACGATGTGTCCATAACAATCCTCAAGGAGGGCATTTACCAGATTATGCTCCACAC 571
||||| |||||||| || || ||||||||||||||| || | ||| |||||||||||||
Sbjct 460 CAACTTCGATGTGTTCACAATAATCCTCAAGGAGGGAATCTCCCAAATTATGCTCCACAT 519
Query 572 CCTGCTATTGT-CTTGAAAATGGAAGATGGAACTGGTCTTCTCCTTCCGATTATCGTCTT 630
|||| ||||| | ||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 520 TCTGCAATTGTGC-TGAAAATGGAAGATGGAACGGGTCTTCTTCTTCCTATTATCGTCTT 578
Query 631 GGAGATGCCTAGTGTGTTACTTATGGCAGCAATGACCAATGTCCAAATTGCAAGACCAAC 690
|||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||
Sbjct 579 GGAGATGCCTAGTGTGTTACTTATAGCAGCAATGACAAATGTTCAAATAGCAAGACCCAC 638
Query 691 CATGTATCAAGTGGTGAAGGAAATGGTGGACAAGATGGGTTACGAAGTTAGACTTGTTAG 750
|||||||||||||||||||| ||||| ||||| |||||||| || ||||| ||||||||
Sbjct 639 TATGTATCAAGTGGTGAAGGAGATGGTAGACAAAATGGGTTATGAGGTTAGGCTTGTTAG 698
Query 751 AGTCACCAAAAGAGTTCACGAGGCATATTTTGCCCAGTTATTCCTTTCAAAGGTGGGTAA 810
||| |||| ||||||||||||||||||||| || |||||| ||||||||||||||||||
Sbjct 699 AGTTACCACAAGAGTTCACGAGGCATATTTCGCAGAGTTATACCTTTCAAAGGTGGGTAA 758
Query 811 TGCCTCGGAGTGTGTCAGCTTTGATCTTAGGCCTTCAGATGCAATCAATATAGCTGTTAG 870
| | |||||| || |||||||||||| | ||||| |||||||| ||||||||||| ||
Sbjct 759 TAAGTTGGAGTGCGTTAGCTTTGATCTTCGTCCTTCTGATGCAATTAATATAGCTGTGAG 818
Query 871 ATGCAAGATACCTATCCAAGTGAACAAGTACCTTGCATATAGTGATGGAATGAGAGTCAT 930
||||||| ||||||||||||| |||||||| || || |||||||||||||||||||||||
Sbjct 819 ATGCAAGGTACCTATCCAAGTCAACAAGTATCTAGCTTATAGTGATGGAATGAGAGTCAT 878
Query 931 TGAGTCAGGGAAGATATCAACACCGG-CACCAGCTTCAGATGGTTTATTATTTACTGAAC 989
|| || || ||| |||||| | | |||| ||||||||||||||||| ||||||||||
Sbjct 879 CGATTCCGGAAAGCTATCAA-AGCAAACACCTGCTTCAGATGGTTTATTGTTTACTGAAC 937
Query 990 AAGACCGACCAAATGGTCAGGCTTGTCTTGATACGAAAGAGTTCAATATTTTGAGCAAAA 1049
|||||| |||||||||||| ||||| ||||||| ||||| ||| || | || || || |
Sbjct 938 TAGACCGGCCAAATGGTCAGCCTTGTTTTGATACAAAAGAATTCGATCTATTAAGGAACA 997
Query 1050 TGATGCAAGCCGTTGATGAAGAGCGATATGATGAAGCCGCTGAGTGGAGAGACAAGCTTG 1109
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 998 TGATGCAAGCTGTTGATGAAGAACGGTATGATGAAGCCGCTGAGTGGAGAGACAAGCTTG 1057
Query 1110 GTCAGTTTCGGGCCAAACGTAACTTGAGGAAATACACATGA 1150
| ||||||| ||| ||||| || || |||||||||||||||
Sbjct 1058 GCCAGTTTCAGGCAAAACGCAAATTAAGGAAATACACATGA 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58049533380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5