BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75388.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926922 jgi|Araly1|926922|scaffold_202483.1 867 0.0
Ahg926921 jgi|Araly1|926921|scaffold_202482.1 318 5e-86
Ahg491198 jgi|Araly1|491198|fgenesh2_kg.7__631__AT4G34588.1 67.6 2e-10
> Ahg926922 jgi|Araly1|926922|scaffold_202483.1
Length=563
Score = 867 bits (469), Expect = 0.0
Identities = 530/559 (95%), Gaps = 6/559 (1%)
Strand=Plus/Plus
Query 514 TGTGTG-TTTT-AATATGAATAATAAAACTGAAATGGGATCTTCCACAAGTGGAAATTGC 571
|||||| |||| ||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 7 TGTGTGTTTTTAAATATGAATAATAAAACTGAAATGGGATCGTCGACAAGTGGTAATTGC 66
Query 572 TCGTCGGTTTCAACCACTGGTTTAGCTAACTCCGGTTCAGAATCTGATCTCCGGCAACGT 631
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 67 TCGTCGGTTTCAACCACCGGTTTAGCTAACTCCGGTTCGGAATCTGATCTCCGGCAACGA 126
Query 632 GATCTAATCGACGAGCGGAAGAGAAAGAGGAAACAGTCGAACAGAGAATCTGCGAGGAGG 691
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 127 GATCTAATCGACGAGCGGAAGCGAAAGCGGAAACAGTCGAACAGAGAATCTGCGAGGAGG 186
Query 692 TCGAGGATGAGGAAGCAGAAGCATTTGGATGATCTCACTGCTCAGGTGACTCATCTACGT 751
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 187 TCGAGGATGAGGAAGCAGAAGCATTTGGATGATCTCACTGCTCAGGTGACACATCTACGT 246
Query 752 AAAGAAAACGCTCAGATCGTCGCCGGAATCGCCGTCACGACGCAGCACTACGTCACTATC 811
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 247 AAAGAAAACGCTCAGATCGTCGCCGGAATCGCCGTCACGACGCAGCACTACGTCACAATC 306
Query 812 GAGGCGGAGAACGACATTCTCAGAGCTCAGGTTCTTGAACTTAACCACCGTCTCCAATCT 871
||| |||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 307 GAGACGGAAAACGACATTCTCAGAGCTCAGGTTCTTGAGCTCAACCACCGTCTCCAATCT 366
Query 872 CTTAACGAGATCGTTGATTTCGTCGAATCTTCTTCTTCAGGATTCGGTATGGAGACCGGT 931
|||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 367 CTTAACGAGATCGTCGATTTCGTGGAATCATCGTCTTCAGGATTCGGTATGGAGACCGGT 426
Query 932 CAGGGATT-ATTCGACGGTGGATTATT-CGACGGCGTGATGAATCCTATGAATCTAGGGT 989
|| ||| | || |||||||||||| || |||||| |||||||||||||||||| ||||||
Sbjct 427 CAAGGAATGAT-CGACGGTGGATT-TTACGACGGAGTGATGAATCCTATGAATTTAGGGT 484
Query 990 TTTATAATCAACCAATCATGGCTTCTGCTTCTACTGCTGGTGATGTTTTCAACTGTTAGA 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TTTATAATCAACCAATCATGGCTTCTGCTTCTACTGCTGGTGATGTTTTCAACTGTTAGA 544
Query 1050 AAACTTCACATCATTATCA 1068
||| |||||||||||||||
Sbjct 545 AAATTTCACATCATTATCA 563
> Ahg926921 jgi|Araly1|926921|scaffold_202482.1
Length=203
Score = 318 bits (172), Expect = 5e-86
Identities = 176/178 (99%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 227 AACTCTTGTGGATCTTGATGTTCAAACATTCATGTCTCCGGTGATTAGTGAAATCCTTAG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26 AACTCTTGTGGATCTTGATGTTCAAACATTCATGTCTCCGGTGATTAGTGAAATCCTTAG 85
Query 287 ATCTGGTTTAACTATAGACTCGTCTCTTAGACGCAGGACCCATCTTGTTCAATCTTTCTC 346
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 86 ATCTGGTTTAACTATAGACTCGTCTCTTAGACGCAGGACCCATCTAGTTCAATCTTTCTC 145
Query 347 CGTCGTCTTTCTCTACTGGTTCTATGTTTTCTCATAAATCAGCTCTCCTTTAGCCCTt 404
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 146 CGTCGTCTTTCTCTACTGGTTCTATGTTTTCTCATAAATCATCTCTCCTTTAGCCCTT 203
> Ahg491198 jgi|Araly1|491198|fgenesh2_kg.7__631__AT4G34588.1
Length=1268
Score = 67.6 bits (36), Expect = 2e-10
Identities = 52/59 (88%), Gaps = 3/59 (5%)
Strand=Plus/Plus
Query 318 CGCAGGACCCATCTTGTTCAATCTTTCTCCGTCGTCTTTCTCTACTGG-TT--CTATGT 373
||||||||||||||||||||||||||||| || ||||| || |||||| || ||||||
Sbjct 297 CGCAGGACCCATCTTGTTCAATCTTTCTCTGTTGTCTTCCTTTACTGGCTTTACTATGT 355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5