BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G75394.1 Length=312 Score E Sequences producing significant alignments: (Bits) Value Ahg933673 jgi|Araly1|933673|scaffold_401661.1 318 1e-86 Ahg316470 jgi|Araly1|316470|fgenesh1_pm.C_scaffold_2001503 207 3e-53 > Ahg933673 jgi|Araly1|933673|scaffold_401661.1 Length=367 Score = 318 bits (172), Expect = 1e-86 Identities = 279/328 (85%), Gaps = 17/328 (5%) Strand=Plus/Plus Query 1 ATGAGCACTGCGACTAGGCCTTCGTCTTCAT-CGACTA-C-C----ATCTGAGAAAATCC 53 |||||||| ||||| |||||||| ||||| | | || | | | || | |||||| || Sbjct 21 ATGAGCACAGCGACAAGGCCTTCTTCTTC-TGCAACAACCTCTGTTATATTAGAAAACCC 79 Query 54 TGTTTCTCATTCACAGCCAACAGAAAGATTAGTGCTTCGGTTGAACAGGAAGAAGAAGAA 113 ||||||||| || ||||| || ||||||||||| ||||| |||||| | ||||||||||| Sbjct 80 TGTTTCTCAATCCCAGCCTACTGAAAGATTAGTCCTTCGCTTGAACCGTAAGAAGAAGAA 139 Query 114 AGTTTCATGGAAAGACGGGACGGTGGACAACGAGTTTATGCAGAAGAAGAGTTCAAAGAA 173 ||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||| Sbjct 140 AGTTTCATGGAAAGACGGGACCGTTGACAACGAGTTCATGCAGAAGAAGAGTTCCAAGAA 199 Query 174 ATGTTGTATCTTTCATAAACAAAAGCCCTTTGATGAGGATGACAGTGAAGAAGAAGATAA 233 ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| | Sbjct 200 GTGTTGCATCTTTCACAAACAGAAGCCCTTTGATGAGGATGACAGTGAAGAAGAAGATGA 259 Query 234 CAAC-A--ACCATCACCAT---CA---CCATGAACACTCCGAATCTTGTGAGGCATCTTC 284 |||| | ||||||| ||| || |||||| ||||| |||||| ||||||||||||| Sbjct 260 CAACCATCACCATCATCATGATCATGACCATGACCACTCTGAATCTGGTGAGGCATCTTC 319 Query 285 TTCTAACGATTCTAAAGCATTTGACTAA 312 |||||| ||||||||||| |||||||| Sbjct 320 TTCTAATGATTCTAAAGCCGTTGACTAA 347 > Ahg316470 jgi|Araly1|316470|fgenesh1_pm.C_scaffold_2001503 Length=291 Score = 207 bits (112), Expect = 3e-53 Identities = 153/171 (89%), Gaps = 10/171 (6%) Strand=Plus/Plus Query 148 TTTATGCAGAAGAAGAGTTCAAAGAAATGTTGTATCTTTCATAAACAAAAGCCCTTTGAT 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTTATGCAGAAGAAGAGTTCAAAGAAATGTTGTATCTTTCATAAACAAAAGCCCTTTGAT 180 Query 208 GAGGATGACAGTGAAGAAGAAGAT-AACAACAA-----CCA---TCACCATCACCATGAA 258 ||||||||||| ||||||||||| || || || ||| |||||||||||||||| Sbjct 181 GAGGATGACAGCGAAGAAGAAGAAGAAGAAGAAGATAACCACCATCACCATCACCATGAA 240 Query 259 CACTCCGAATCTTGTGAGGCATCTTCTTCTAACGATTCTAAA-GCATTTGA 308 |||||||||||| ||||||| || |||||||||||||||||| ||| |||| Sbjct 241 CACTCCGAATCTGGTGAGGCCTCGTCTTCTAACGATTCTAAAAGCAGTTGA 291 Score = 141 bits (76), Expect = 3e-33 Identities = 117/135 (87%), Gaps = 9/135 (7%) Strand=Plus/Plus Query 1 ATGAGCACTGCGACTAGGCCTTCGTCTTCATCGACTA---C---CATCTGAGAAAATCCT 54 |||||||| ||||| ||||||||||||||| |||| | | ||||| |||||| ||| Sbjct 1 ATGAGCACAGCGACCAGGCCTTCGTCTTCAGCGACAACCTCTGTCATCTTAGAAAACCCT 60 Query 55 GTTTCTCATTCACAGCCAACAGAAAGATTAGTGCTTCGGTTGAACAGGAAGAAGAAGAAA 114 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 GTTTCTCAATCACAGCCAACAGAGAGATTAGTGCTTCGGTTGAACAGGAAGAAGAAGAAA 120 Query 115 GTTTCATGGA-AAGA 128 ||| ||| | |||| Sbjct 121 -TTT-ATGCAGAAGA 133 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10988809632 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5