BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G75394.1

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933673 jgi|Araly1|933673|scaffold_401661.1                        318    1e-86
  Ahg316470 jgi|Araly1|316470|fgenesh1_pm.C_scaffold_2001503           207    3e-53


> Ahg933673 jgi|Araly1|933673|scaffold_401661.1
Length=367

 Score =  318 bits (172),  Expect = 1e-86
 Identities = 279/328 (85%), Gaps = 17/328 (5%)
 Strand=Plus/Plus

Query  1    ATGAGCACTGCGACTAGGCCTTCGTCTTCAT-CGACTA-C-C----ATCTGAGAAAATCC  53
            |||||||| ||||| |||||||| ||||| | | || | | |    || | |||||| ||
Sbjct  21   ATGAGCACAGCGACAAGGCCTTCTTCTTC-TGCAACAACCTCTGTTATATTAGAAAACCC  79

Query  54   TGTTTCTCATTCACAGCCAACAGAAAGATTAGTGCTTCGGTTGAACAGGAAGAAGAAGAA  113
            ||||||||| || ||||| || ||||||||||| ||||| |||||| | |||||||||||
Sbjct  80   TGTTTCTCAATCCCAGCCTACTGAAAGATTAGTCCTTCGCTTGAACCGTAAGAAGAAGAA  139

Query  114  AGTTTCATGGAAAGACGGGACGGTGGACAACGAGTTTATGCAGAAGAAGAGTTCAAAGAA  173
            ||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||
Sbjct  140  AGTTTCATGGAAAGACGGGACCGTTGACAACGAGTTCATGCAGAAGAAGAGTTCCAAGAA  199

Query  174  ATGTTGTATCTTTCATAAACAAAAGCCCTTTGATGAGGATGACAGTGAAGAAGAAGATAA  233
             ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct  200  GTGTTGCATCTTTCACAAACAGAAGCCCTTTGATGAGGATGACAGTGAAGAAGAAGATGA  259

Query  234  CAAC-A--ACCATCACCAT---CA---CCATGAACACTCCGAATCTTGTGAGGCATCTTC  284
            |||| |  ||||||| |||   ||   |||||| ||||| |||||| |||||||||||||
Sbjct  260  CAACCATCACCATCATCATGATCATGACCATGACCACTCTGAATCTGGTGAGGCATCTTC  319

Query  285  TTCTAACGATTCTAAAGCATTTGACTAA  312
            |||||| |||||||||||  ||||||||
Sbjct  320  TTCTAATGATTCTAAAGCCGTTGACTAA  347


> Ahg316470 jgi|Araly1|316470|fgenesh1_pm.C_scaffold_2001503
Length=291

 Score =  207 bits (112),  Expect = 3e-53
 Identities = 153/171 (89%), Gaps = 10/171 (6%)
 Strand=Plus/Plus

Query  148  TTTATGCAGAAGAAGAGTTCAAAGAAATGTTGTATCTTTCATAAACAAAAGCCCTTTGAT  207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTTATGCAGAAGAAGAGTTCAAAGAAATGTTGTATCTTTCATAAACAAAAGCCCTTTGAT  180

Query  208  GAGGATGACAGTGAAGAAGAAGAT-AACAACAA-----CCA---TCACCATCACCATGAA  258
            ||||||||||| |||||||||||  || || ||     |||   ||||||||||||||||
Sbjct  181  GAGGATGACAGCGAAGAAGAAGAAGAAGAAGAAGATAACCACCATCACCATCACCATGAA  240

Query  259  CACTCCGAATCTTGTGAGGCATCTTCTTCTAACGATTCTAAA-GCATTTGA  308
            |||||||||||| ||||||| || |||||||||||||||||| ||| ||||
Sbjct  241  CACTCCGAATCTGGTGAGGCCTCGTCTTCTAACGATTCTAAAAGCAGTTGA  291


 Score =  141 bits (76),  Expect = 3e-33
 Identities = 117/135 (87%), Gaps = 9/135 (7%)
 Strand=Plus/Plus

Query  1    ATGAGCACTGCGACTAGGCCTTCGTCTTCATCGACTA---C---CATCTGAGAAAATCCT  54
            |||||||| ||||| ||||||||||||||| |||| |   |   ||||| |||||| |||
Sbjct  1    ATGAGCACAGCGACCAGGCCTTCGTCTTCAGCGACAACCTCTGTCATCTTAGAAAACCCT  60

Query  55   GTTTCTCATTCACAGCCAACAGAAAGATTAGTGCTTCGGTTGAACAGGAAGAAGAAGAAA  114
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   GTTTCTCAATCACAGCCAACAGAGAGATTAGTGCTTCGGTTGAACAGGAAGAAGAAGAAA  120

Query  115  GTTTCATGGA-AAGA  128
             ||| ||| | ||||
Sbjct  121  -TTT-ATGCAGAAGA  133



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10988809632


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5