BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75400.1
Length=1948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926923 jgi|Araly1|926923|scaffold_202484.1 2230 0.0
Ahg472194 jgi|Araly1|472194|fgenesh2_kg.1__2148__AT1G19680.1 575 4e-163
> Ahg926923 jgi|Araly1|926923|scaffold_202484.1
Length=1408
Score = 2230 bits (1207), Expect = 0.0
Identities = 1329/1389 (96%), Gaps = 3/1389 (0%)
Strand=Plus/Plus
Query 359 ATGGGTTCAGTTTGTTGTGTAGCTGTGAAAGACAGAAAGGTTCCTCCTAGTGGTGGACCT 418
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGGTTCAGTTTGTTGTGTAGCTATGAAAGACAGAAAGGTTCCTCCTAGTGGTGGACCT 80
Query 419 GCGAGTTCATCTGTTCATCGGAATTCAGCATGTTCGCCACAATGGAGTTTTCGACGTGAT 478
|||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 GCGAGTGCGTCTGTCCATCGGAATTCAGCATGTTCGCCACAATGGAGTTTTCGACGTGAC 140
Query 479 AATAGGAGGCGAGTGGCTGATGAGATTGAGGGTTCACCTTATTACAGTCCTTATGTTGCG 538
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 141 AATAGGAGGCGAGTGGCTGATGAGATTGAGGGTTCACCTTATTACAGTCCATATGTTGCA 200
Query 539 AGTAGAGGTATTAGTATGGATAAGATGTCATTAGGCTCTGAGAGAGGAACTTTATCTGAA 598
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 201 AGTAGAGGTATTAGTATGGATAAGATGTCATTAGGCTCTGAAATAGGAACTTTATCTGAG 260
Query 599 GGAGGAACCCCTCCTGATGGACATTTAGGGACTCCTGCTTCTCAGAAATCAGCAACTCCG 658
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 261 GGAGGAACCCCTCCTGATGGGCATTTAGGGACTCCTGCTTCTCATAAATCAGCCACTCCA 320
Query 659 GAAATGAGCACCAATTCCATGGTTCCACCTTCTTCAGGTTCATCCTTGGCAAGCAGTGAT 718
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GAAATGAGCACAAATTCTATGGTTCCACCTTCTTCAGGTTCATCCTTGGCAAGCAGTGAT 380
Query 719 CTCATTGAGGTGAAGAACTTAGTTGACTCACCTGGAATTGTCCCTTCAGCTCAATCGAAG 778
||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||
Sbjct 381 CTCATTGAGGTGAAGAACTTAATTGACTCACCTGGAAATGTCCCGTCAGCTTTGCCGAAG 440
Query 779 CCTTTGTTCTCCACGCCTTCTCTTCCCAATCCAGTTAGTGATCTTTCATCGGCTCACACG 838
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 441 CCTTTGTTCTCCACACCTTCTCTTCCCAATCCAGTCGGTGATCTTTCATCGGCTCACACG 500
Query 839 CGTTTGCTTCCTCCTAAATCCACACCATCAAGACGGGCTCGGCGTTCACCTGGGCATCAG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 CGTTTGCTTCCTCCTAAATCCACACCATCAAGACGGGCTCGGCGTTCACCTGGGCATCAG 560
Query 899 TTGTTTAGGCAGGTTTCTGATAGTCAAATTTTAGGACTGAAATCCCCAATTAATAATTAC 958
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 561 TTGTTTAGGCAGGTTTCTGATAGTCAAATCTTAGGACTGAAATCCCCAAATAATAATTAC 620
Query 959 TCAATCTCAGAAGGAAGGTCGTCCTTTGTGCTTTCGACCTGTAGCAATGACTTCGCCACT 1018
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 621 TCGATCTCAGAAGGAAGGTCGTCCTTTGTGCTTTCAACCTGTAGCAATGACTTCGCCACT 680
Query 1019 GGATCCCAGTACGCATCTTCTGAAGGTGGCTGGTCTATGAACACTTTTTCTGAGCTCGTG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GGATCCCAGTACGCATCTTCTGAAGGTGGCTGGTCTATGAACACTTTTTCTGAGCTCGTG 740
Query 1079 GCATATTCTCAAAGGGATAGATGGTCCTTTGATAGCGAACACTTGGGTTCTGGCAGACGG 1138
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 741 GCGTATTCTCAAAGGGAGAGATGGTCCTTTGATAGCGAACACTTAGGTTCTGGCAGACGG 800
Query 1139 AAACTAAGTGGTGGTAGCAGCAGATTCTCATTCTCCCCTTCCGTTGTTGATCAGCAGGTT 1198
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct 801 AAACTAAGTGGTGGTAGCAGCAGATTCTCCTTCTCCCCTTCCATTGTTGATCAGCAGATT 860
Query 1199 TGTGGAGCTTGTTCAAAGTTGCTAACCGAGAGGTCTTCTATAGCCACTTTTGAGCTCCCA 1258
||||||||||| |||||||| |||||||||||||||||||| |||| ||| |||||||||
Sbjct 861 TGTGGAGCTTGCTCAAAGTTACTAACCGAGAGGTCTTCTATTGCCAATTTCGAGCTCCCA 920
Query 1259 ATCGCTGCTGTTCTTGCCTGTGGTCATGTTTACCACGCAGAGTGCTTAGAGACCATGACT 1318
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 921 ATCGCTGCTGTTCTTGCGTGTGGCCATGTTTACCACGCAGAGTGCTTAGAGACCATGACT 980
Query 1319 ACTGATATAGAGAAGTATGATCCTGCTTGTCCCATATGCACAATTGGGGAGAAACGGGTT 1378
|| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 981 ACCGAGATAGAGAAGTACGATCCTGCTTGTCCCATATGCACGATTGGGGAGAAACGGGTA 1040
Query 1379 GCGAAAATAACAAGGAAAGCCCTAAAAGCGGAGGCGGAAGCAAAGGCAAAGCAGTACAAA 1438
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1041 GCGAAAATAACAAGGAAAGCCCTTAAAGCGGAGGCGGAAGCAAAGGCAAAGCAGTACAAA 1100
Query 1439 AGATGTAAAAACCGTGTGGTAGATAGTTACGGTGAGAGTGAATGCGATGAGTTTGTATTC 1498
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1101 AGATGTAAAAACCGTGTGGTAGATAGTTATGGTGAGAGTGAATGCGATGAGTTTGTGTTC 1160
Query 1499 CAGAAAATGGGGAAACGAGAAGGCAAAGCTCTCAAGCTGGAAGCTAGTTGCAGTAGCAAG 1558
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1161 CAGAAAATGGAGAAACGAGAAGGCAAAGCTCTTAAGCTGGAAGCTAGTTGCAGTAGCAAG 1220
Query 1559 AGCTCGTCTAATAAGTCATTCTTGAAATGGCACTTTGCTTCTATCAGCTCCAAGTGGAAT 1618
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1221 AGCTCGTCTAATAAGTCATTCTTAAAATGGCACTTTGCTTCTATCAGCTCCAAGTGGAAT 1280
Query 1619 AAACCCTCGTCCAAAGACTCTGCATTGAAGAAGGGATTCTGGTCTAGACATCGAAATAAC 1678
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1281 AAACCCTCGTCCAAAGACTCTGCATTGAAGAAGGGGTTCTGGTCTAGACATCGTAATAAC 1340
Query 1679 CGGTCTTCTTCAAGCATAGAGGGACTTAATCAGACATCTCCGCTATGATGAAACCCCTCC 1738
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1341 CGGTCTTCTTCAAGCATAGAGGGACTTAATCAGACATCTCAGCTATGATGAAACCCC-CC 1399
Query 1739 --ATCTGGA 1745
|||||||
Sbjct 1400 TGATCTGGA 1408
> Ahg472194 jgi|Araly1|472194|fgenesh2_kg.1__2148__AT1G19680.1
Length=1689
Score = 575 bits (311), Expect = 4e-163
Identities = 662/825 (80%), Gaps = 49/825 (6%)
Strand=Plus/Plus
Query 817 TGATCTTTCATCGGCTCACACGCGTTTGCTTCCTCCTAAATCCACACCATCAAGACGGGC 876
||||||| |||||| || ||| | || ||||||||| | ||| || ||| | ||||| ||
Sbjct 641 TGATCTTCCATCGGGTCTCACACATTCGCTTCCTCCCAGATCAACTCCAACTAGACGTGC 700
Query 877 TCG-GCGTTCACCTGGGCATCAGTTGTTTAGGCAGGTTTCTGATAGTCAAATTTTAGGAC 935
||| | ||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||
Sbjct 701 TCGAG-GTTCACCTGGGCAGCAGTTGTTTAGGCAGGTTTCTGATAGTCAAACTTTGGGAC 759
Query 936 TGAAATC-CCCAATTAATAATTACTCAATCTCAGAAGGAAGGTCGTCCTTTGTGCTTTCG 994
||||||| ||| || ||||||||||| || |||||||||||||||||||||||||||
Sbjct 760 TGAAATCACCC----AACAATTACTCAATATCTGAAGGAAGGTCGTCCTTTGTGCTTTCG 815
Query 995 ACCTGTAGCAATGACT-TCGCCACTGGATCCCAGTACG-CATCTTCTGAAGGTGGCTGGT 1052
|||||||| |||||| | | |||||| ||||| || | |||||||||||||||||||
Sbjct 816 ACCTGTAGTAATGACACT-GTCACTGGGTCCCA-TAATACTTCTTCTGAAGGTGGCTGGT 873
Query 1053 CTATGAACACTTTTTCTGAGCTCGTGGCAT-ATTCTCAAAGGGATAGATGGTCCTTTGAT 1111
| |||||| | |||| |||||||||| | | | ||||||||||| |||||||| ||||||
Sbjct 874 CCATGAACGCCTTTTGTGAGCTCGTGTC-TCAATCTCAAAGGGAGAGATGGTCGTTTGAT 932
Query 1112 AGCGAACACTTGGGTTCTGGCAGACGGAA-ACTAAGTGG-TG--GTAGCAGCAGATTCTC 1167
|| || ||||| |||||||| | ||| || ||||||||| || |||| |||||||||||
Sbjct 933 AGTGAGCACTTAGGTTCTGGAATACG-AAGACTAAGTGGGTGTAGTAGTAGCAGATTCTC 991
Query 1168 ATTCTCCCCTTCCGTTGTTGATCAGCAGGTTTGTGG-AGCTTGTTCAAAG-TTGCTAACC 1225
| ||||||||| | || |||| |||| |||||| | ||| |||||| || ||||
Sbjct 992 GTGCTCCCCTTC--T-GTAGATCGGCAGACTTGTGGGAA-TTGCTCAAAGCTTT-TAACT 1046
Query 1226 GAGAGGTCTTCTATAGCCACTTTTGAGCTCCCAATCGCTGCTGTTCTTGCCTGTGGTCAT 1285
||||||||||| || |||| ||||| || ||||| |||||||||| || ||||| |||
Sbjct 1047 GAGAGGTCTTCAATTGCCAGGTTTGACCTTCCAATTTCTGCTGTTCTAGCGTGTGGCCAT 1106
Query 1286 GTTTACCACGCAGAGTGCTTAGAGACCATGACTACTGATATAGAGAAGTATGATCCTGCT 1345
|||||||| ||||| ||||||||||| ||||| | ||| | |||||||||||||||| |
Sbjct 1107 GTTTACCATGCAGAATGCTTAGAGACAATGACAAGTGAGACAGAGAAGTATGATCCTACA 1166
Query 1346 TGTCCCATATGCACAATTGGGGA-GAAACGGGTTGCGAAAATAACAAGGAAAGCCCTAAA 1404
|||||||||||| || | | | | || | || | ||| || | |||||||| |||||
Sbjct 1167 TGTCCCATATGCGCA---GAG-ACGCAA-G--TTACTAAATTATCGAGGAAAGCTCTAAA 1219
Query 1405 AGCGGAGGCG-GAAGCAAAGGCAAAGCAGT-ACAAAAGATGTAAAAACCGTGTGGTAGAT 1462
|||||| | ||| ||||||| | ||| ||||||||||||| |||| ||||||||||
Sbjct 1220 GGCGGAG-CAAGAATTGAAGGCAACG-AGTTACAAAAGATGTAAGAACCATGTGGTAGAT 1277
Query 1463 AGTTACGGTGAG-AGTGAATGCGATGAGT-TTGTATTCCAGAAAATGGGGAAACGAGAAG 1520
||||| | | | |||||||| || || | |||| ||||||||| | ||||| |||||||
Sbjct 1278 AGTTATG-TCCGCAGTGAATGTGAGGA-TCTTGTGTTCCAGAAACTAGGGAAGCGAGAAG 1335
Query 1521 GCAAAGCTCTCAAGCTGGAAGCTAGTTGCA-GTAGCAAGAG-CTCGTC-TAATAAGTCAT 1577
| |||| ||| ||| | || |||||| || ||| ||| || ||| | | |||||| |
Sbjct 1336 GAAAAGGTCTAAAGATAGATCCTAGTT-CAAGTACCAA-AGGCTCCACGTC-TAAGTCTT 1392
Query 1578 TCT-TGAAATGGCACTTTGCTTCTATCAGCTCCAAGTGGAATAAA 1621
| | ||||||||||||| | ||| ||||| ||||||||| ||||
Sbjct 1393 T-TATGAAATGGCACTTCGGTTCCGTCAGCGCCAAGTGGAGTAAA 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73209450890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5