BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75420.1
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316473 jgi|Araly1|316473|fgenesh1_pm.C_scaffold_2001506 2041 0.0
Ahg920921 jgi|Araly1|920921|scaffold_102202.1 1256 0.0
> Ahg316473 jgi|Araly1|316473|fgenesh1_pm.C_scaffold_2001506
Length=1377
Score = 2041 bits (1105), Expect = 0.0
Identities = 1296/1387 (93%), Gaps = 17/1387 (1%)
Strand=Plus/Plus
Query 179 AAAGCGTCGACGATGCAAAGGAAGAGATGGGCACTGATGGTTTTGTTGTTTCTATCTGTA 238
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 7 AAAGCGTCGACGATGCAAAAGAAGAGATGGGCACTAATGGTTTTGTTGTTTCTATCTGTA 66
Query 239 TCAACAGTGTGTATGATTCTCGTGAGATCTAGCTTTGAAACCTGTAGCATTAGTAGCCAA 298
|||||||| ||| ||||||||||||||||||| |||||| |||||||| || || |||||
Sbjct 67 TCAACAGTTTGTGTGATTCTCGTGAGATCTAGTTTTGAATCCTGTAGCGTTGGTGGCCAA 126
Query 299 TTCGTGGAAGAAAAGAATGGAGAAAGCAGCGCCGCGAAGTTTCAATCGAATCCTCTAGAT 358
||||| | | || || ||||||| ||||||||||||||||||||||| |
Sbjct 127 TTCGT----G----G-AT-----AA-CAGCGCCTTGAAGTTTCAATCGAATCCTCTAGCT 171
Query 359 TTCATGAAATCGAAGCTCGTTTTGTTAGTATCCCACGAGCTATCACTCTCAGGTGGACCT 418
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 172 TTCATGAAATCGAAACTCGTTTTGTTAGTCTCCCACGAGCTATCACTCTCAGGAGGACCT 231
Query 419 TTGCTATTGATGGAATTGGCGTTTTTGTTAAGAGGAGTTGGTGCTGACGTTGTTTGGATC 478
|||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 232 CTGCTCTTAATGGAATTGGCGTTTTTGTTAAGAGGAGTTGGTGCTGAAGTTGTTTGGATC 291
Query 479 ACTAATCA-AAAGCCACTTGAAGATGATGAAGTTGTCTATAGTCTTGAACACAAGATGTT 537
|||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 292 ACTAATCAGAAA-CCACTTGAAGAAGATGAAGTTGTCTATAGTCTTGAACACAAGATGTT 350
Query 538 GGATCGAGGAGTTCAGGTTATCTCTGCAAAGGGTCAGAAAGCTGTAGATACATCTCTCAA 597
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 AGACCGAGGAGTTCAGGTTATCTCTGCAAAGGGTCAGAAAGCTGTAGATACATCTCTCAA 410
Query 598 GGCTGATTTGATTGTTCTTAATACTGCTGTGGCTGGGAAATGGCTTGATGCTGTTCTAAA 657
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 411 GGCTGATTTGATTGTTCTTAATACTGCTGTGGCTGGGAAATGGCTGGATGCTGTTCTCAA 470
Query 658 AGAAAATGTTGTTAAAGTTCTACCTAAGATCCTATGGTGGATTCATGAGATGAGAGGACA 717
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 471 GGAAAATGTTGTTAAAGTTCTACCTAAGATCCTTTGGTGGATTCATGAGATGAGAGGACA 530
Query 718 CTATTTCAATGCTGATTTGGTCAAACACCTCCCCTTTGTTGCAGGGGCCATGATTGATTC 777
||||| ||| | |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 531 TTATTTTAATCCGGATTTGGTCAAACACCTCCCGTTTGTTGCAGGGGCTATGATTGATTC 590
Query 778 GCATGCAACAGCTGGATACTGGAAAAACAGAACACAAGCTCGCCTAGGGATTAAAATGCC 837
||||||||| || | |||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 591 GCATGCAACGGCCGAATACTGGAAAAACAGAACTCAAGCTCGCTTAGGGATTAAGATGCC 650
Query 838 CAAAACTTACGTTGTGCACCTAGGAAATAGCAAGGAATTGATGGAAGTAGCTGAAGATAG 897
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 651 CAAAACTTACGTTGTGCACCTAGGAAATAGCAAGGATTTGATGGAAGTAGCTGAAGATAG 710
Query 898 TGTTGCCAAGAGAGTTCTCCGTGAGCACGTCCGAGAATCTCTTGGAGTGCGGAATGAAGA 957
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 711 TGTTGCCAAGAGAGTTCTCCGTGAGCACATCCGAGAATCTCTTGGAGTGCGGAATGAAGA 770
Query 958 CTTACTCTTTGGCATTATTAATAGTGTATCGCGTGGAAAAGGCCAGGATCTGTTCCTCCG 1017
|||||| ||||||||||| |||||||||||||| |||||||| ||||| ||||||||| |
Sbjct 771 CTTACTGTTTGGCATTATCAATAGTGTATCGCGCGGAAAAGGGCAGGACCTGTTCCTCAG 830
Query 1018 AGCCTTCCACGAAAGTCTTGAAAGAATCAAAGAGAAGAAACTTCAGGTACCAACAATGCA 1077
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 831 AGCCTTCCACGAAAGTCTTGAAATAATCAGAGAGAAGAAACTTCAGGTACCAACAATGCA 890
Query 1078 TGCAGTAGTAGTAGGAAGCGACATGAGCAAGCAGACAAAGTTCGAGACAGAGCTACGCAA 1137
|||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||
Sbjct 891 TGCAGTAGTAGTAGGAAGTGACATGAGCCGGCAGACAAAGTTCGAGACAGAACTACGCAA 950
Query 1138 CTTTGTCCGAGAAAAGAAACTTGAGAACTTTGTCCACTTCGTCAACAAAACTCTAACCGT 1197
|||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||| |||
Sbjct 951 CTTTGTCCTAGAAAAAAAACTTGAGAACTTTATCCACTTTGTCAACAAAACTCTAAGCGT 1010
Query 1198 AGCACCATATATAGCAGCCATAGACGTTCTTGTCCAAAACTCCCAAGCCAGAGGAGAATG 1257
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1011 AGCGCCATATATAGCAGCCATAGACGTTCTTGTCCAGAACTCCCAAGCCAGAGGAGAGTG 1070
Query 1258 CTTTGGGAGAATAACAATCGAAGCCATGGCCTTTAAGCTACCTGTACTTGGTACTGCAGC 1317
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1071 CTTTGGGAGAATAACAATCGAGGCCATGGCCTTTAAGCTACCTGTACTTGGCACTGCAGC 1130
Query 1318 CGGAGGAACAATGGAGATTGTAGTGAATGGAACGACTGGTCTGTTACATAGTGCAGGGAA 1377
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1131 CGGAGGAACAATGGAGATTGTAGTGAATGGAACGACCGGTCTGTTACATAGTGCAGGGAA 1190
Query 1378 AGAAGGAGTGATACCTCTCGCCAAGAACATAGTGAAGTTGGCGACGCAAGTTGAGTTACG 1437
||||||||||||||||||||| |||||||||||||| ||||| | |||||||||||||||
Sbjct 1191 AGAAGGAGTGATACCTCTCGCTAAGAACATAGTGAAATTGGCAATGCAAGTTGAGTTACG 1250
Query 1438 GCTGAGAATGGGAAAAAATGGGTATGAGAGAGTAAAAGAGATGTTTTTGGAACATCATAT 1497
||| | ||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1251 GCTAACAATGGGAAACAATGGTTATGAGAGGGTAAAGGAGATGTTTTTGGAACATCATAT 1310
Query 1498 GTCACATCGAATAGCTTCGGTACTCAAAGAAGTCTTGCAACACGCAAAGGCTCGTGCTTT 1557
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1311 GTCACATCGAATAGCTTCGGTACTCAAAGAAGTCTTGCAACACGCAAAGGCCCGTGCTTT 1370
Query 1558 ACGATGA 1564
|||||||
Sbjct 1371 ACGATGA 1377
> Ahg920921 jgi|Araly1|920921|scaffold_102202.1
Length=1485
Score = 1256 bits (680), Expect = 0.0
Identities = 1171/1399 (84%), Gaps = 69/1399 (5%)
Strand=Plus/Plus
Query 192 TGCA-AAGGAAGAGATGGGCACTGATGGTTTTGTT-GTTTCTATCTGTATCAACAGT-GT 248
|||| || |||||||||| | |||||| || | || |||| |||||||||||||||| |
Sbjct 55 TGCAGAA-GAAGAGATGGCCTCTGATGATTCTCTTGGTTT-TATCTGTATCAACAGTAG- 111
Query 249 GTATGATTCTCGTGAGATCTAGC-TTTGAAACCTGTAGCATTAGTAGCCA-A-TTCGTGG 305
| ||||||||||||||||||| | ||||| ||||||| ||||| | | | | ||||
Sbjct 112 GAATGATTCTCGTGAGATCTA-CTTTTGATTCCTGTAGTGTTAGTGGAAAGAGGT-GTGG 169
Query 306 --AAGA-AAAGAATGGAGAA-AGCA--G-CG--CCG--CGAA---GTTTC--AATC---G 346
||| || ||| || || | || | || | | || ||||| ||| |
Sbjct 170 CCGAGAGAAGGAA--GATAATAACAGTGACGTTAAGATCCAATCGGTTTCTGGATCGTTG 227
Query 347 AATCCTCTAGATTTCATGAAATCGAAGCTCGTTTTG-TTAGTATCCCACGAGCTATCACT 405
||||| || | ||||||||||||||||||||||||| || || || |||||||| || ||
Sbjct 228 AATCCGCTCGGTTTCATGAAATCGAAGCTCGTTTTGCTT-GTTTCTCACGAGCTCTCGCT 286
Query 406 CTCAGGTGGACCTTTGCTATTGATGGAATTGGCGTTTTTG-TTAAGAGGAGTTG-GTGCT 463
|||||||||||||||| | || |||||||||||||||||| || |||||||||| | ||
Sbjct 287 CTCAGGTGGACCTTTGTTGTTAATGGAATTGGCGTTTTTGCTT-AGAGGAGTTGAAT-CT 344
Query 464 GACGTTGTTTGGATCACTAATCA-AAAGCCACTTGAAGATGATGAAGTTG-TCTATA-GT 520
|| |||||||||||||| ||||| ||| ||| ||||||| ||||||| || || | | ||
Sbjct 345 GAAGTTGTTTGGATCACGAATCAGAAA-CCAGTTGAAGAAGATGAAG-TGATC-A-AGGT 400
Query 521 CTT-GAACACAAGATGTTGGATCGAGGAGTTCAGGTTATCTCTGCAAAGGGTCAGAAAGC 579
|| |||||||||||||||||||||||||| |||||||| || |||||| ||||||||||
Sbjct 401 TTTGGAACACAAGATGTTGGATCGAGGAGTGCAGGTTATATCAGCAAAGAGTCAGAAAGC 460
Query 580 TGTAGATACATCTCTCAAGGCTGATTTGATTGTTCTT-AATACTGCTGTGGCTGGGAAAT 638
| |||||||| |||| ||| |||||||| ||| | || ||||||||||| ||||||||||
Sbjct 461 TATAGATACAGCTCTTAAGTCTGATTTGGTTG-TGTTGAATACTGCTGTTGCTGGGAAAT 519
Query 639 GGCTTGATGCTGTTCTAAAAGAAAATGTTGTTAAAGTTCTACCTAAGATCCTATGGTGGA 698
|||||||||| ||||| || || |||||| || |||||| || || || || |||||||
Sbjct 520 GGCTTGATGCAGTTCTCAAGGACAATGTTCCTATAGTTCTTCCCAAAATACTCTGGTGGA 579
Query 699 TTCATGAGATGAGAGGACACTATTTCAATGCTGATTTGGTCAAACACCTCCCCTTTGTTG 758
|||||||||||||||| ||||||||||| | ||||| ||||| ||||| || |||||||
Sbjct 580 TTCATGAGATGAGAGGTCACTATTTCAAACCGGATTTAGTCAAGCACCTTCCGTTTGTTG 639
Query 759 CAGGGGCCATGATTGATTCGCATGCAACAGCTGGATACTGGAAAAACAGAACACAAGCTC 818
|||| || ||||||||||| || |||||||||| ||||||||| || ||||| || | ||
Sbjct 640 CAGGCGCTATGATTGATTCACACGCAACAGCTGAATACTGGAAGAATAGAACTCATGATC 699
Query 819 GCCTAGGGATTAAAATGCCCAAAACTTACGTTGTGCACCTAGGAAATAGCAAGGAATTGA 878
|| |||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||
Sbjct 700 GCTTAGGGATTAAAATGCCTAAAACTTATGTCGTGCACCTAGGAAATAGCAAGGAGTTGA 759
Query 879 TGGAAGTAGCTGAAGATAGTGTT-GCCAAGAGA-GTTCTCCGTGAGCACGTCCGAGAATC 936
||||||||||||||||||| ||| ||||||| | |||||||||||||| || ||||||||
Sbjct 760 TGGAAGTAGCTGAAGATAG-GTTCGCCAAGA-ATGTTCTCCGTGAGCAAGTTCGAGAATC 817
Query 937 TCTTGGAGTGCGGAATGAAGACTTACTCTTTGGCATTATTAATAGTGTATCGCGTGGAAA 996
|||||||| | ||||||||||| |||| ||||||||||||||||||||||| || |||||
Sbjct 818 TCTTGGAGCGAGGAATGAAGACATACTATTTGGCATTATTAATAGTGTATCTCGAGGAAA 877
Query 997 AGGCCAGGATCTGTTCCTCCGAGCCTTCCACGAAAGTCTTGAAAG-AATCAAAGAG---A 1052
||||| ||||| ||||||||| ||||| | ||||||||| |||| |||||||||| |
Sbjct 878 GGGCCAAGATCTATTCCTCCGATCCTTCTATGAAAGTCTT-AAAGTAATCAAAGAGACTA 936
Query 1053 AGAAACTTCAGGTACCAACAATGCATGCAGTAGTAGTAGGAAGCGACATGAGC-AAGCAG 1111
|||||||| |||||||||||||||||||||| ||||||||||| || |||||| | |||
Sbjct 937 AGAAACTTGAGGTACCAACAATGCATGCAGTGGTAGTAGGAAGTGATATGAGCGCA-CAG 995
Query 1112 AC-AAAGTTCGAGACAGAGCTACGCAACTTTGTCCGAGAAAAGAAACTTGAGAACTTTGT 1170
|| ||| |||||||||||| ||||||||||||||| ||| ||||||||| |||| ||||
Sbjct 996 ACGAAA-TTCGAGACAGAGTTACGCAACTTTGTCCAAGAGAAGAAACTTCAGAAAATTGT 1054
Query 1171 CCACTTCGTCAACAAAACTCT-AACCGTAGCACCATATATAGCAGCCATAGACGTTCTTG 1229
|||||| || |||||||| | || |||||||||||| |||| || || || |||||||
Sbjct 1055 CCACTTTGTTAACAAAACAATGAA-AGTAGCACCATATCTAGCGGCTATTGATGTTCTTG 1113
Query 1230 TCCAAAACTCCCAAGCCAGAGGAGAATGCTTTGGGAGAATAACAATCGAAGCCATGGCCT 1289
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1114 TCCAAAACTCCCAAGCCAGAGGAGAATGCTTTGGGAGAATAACAATCGAAGCTATGGCCT 1173
Query 1290 TTAAGCTACCTGTACTTGGTACTGCAGCCGGAGGAACAATGGAGATTGTAGTGAATGGAA 1349
||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| |||
Sbjct 1174 TTAAGCTTCCTGTACTTGGGACTGCAGCAGGAGGGACAATGGAGATTGTAGTGAACAGAA 1233
Query 1350 CGACTGGTCTGTTACATAGTGCAGGGAAAGAAGGAGTGATACCTCTCGCCAAGAACATAG 1409
| || ||||| ||||| | | || ||||| || ||| ||||||| || || ||||| |
Sbjct 1234 CAACCGGTCTATTACACAACACCGGTAAAGATGGCGTGTTACCTCTTGCTAAAAACATTG 1293
Query 1410 TGAAGTTGGCGACGCAAGTTG-AGTT-ACGGCTGAGAATGGGAAA-AAATGGGTATGAGA 1466
||||| ||||||| || || || | | || || |||||| || ||| ||||| ||||
Sbjct 1294 TGAAGCTGGCGACT-AACATGGAGATGA-GGAGGACAATGGGGAAGAAA-GGGTACGAGA 1350
Query 1467 GAGTAAAAGAGATGTTTTTGGAACATCATATGTCACATCGAATAGCTTCGGTACTCAAAG 1526
| |||||||||||||| ||||||||||||||||| |||||||||||||| || |||| ||
Sbjct 1351 GGGTAAAAGAGATGTTCTTGGAACATCATATGTCTCATCGAATAGCTTCTGTGCTCAGAG 1410
Query 1527 AAGTCTTGCAACACGCAAA 1545
|||| ||||||||||||||
Sbjct 1411 AAGTGTTGCAACACGCAAA 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65667582380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5