BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G75420.1 Length=1750 Score E Sequences producing significant alignments: (Bits) Value Ahg316473 jgi|Araly1|316473|fgenesh1_pm.C_scaffold_2001506 2041 0.0 Ahg920921 jgi|Araly1|920921|scaffold_102202.1 1256 0.0 > Ahg316473 jgi|Araly1|316473|fgenesh1_pm.C_scaffold_2001506 Length=1377 Score = 2041 bits (1105), Expect = 0.0 Identities = 1296/1387 (93%), Gaps = 17/1387 (1%) Strand=Plus/Plus Query 179 AAAGCGTCGACGATGCAAAGGAAGAGATGGGCACTGATGGTTTTGTTGTTTCTATCTGTA 238 ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 7 AAAGCGTCGACGATGCAAAAGAAGAGATGGGCACTAATGGTTTTGTTGTTTCTATCTGTA 66 Query 239 TCAACAGTGTGTATGATTCTCGTGAGATCTAGCTTTGAAACCTGTAGCATTAGTAGCCAA 298 |||||||| ||| ||||||||||||||||||| |||||| |||||||| || || ||||| Sbjct 67 TCAACAGTTTGTGTGATTCTCGTGAGATCTAGTTTTGAATCCTGTAGCGTTGGTGGCCAA 126 Query 299 TTCGTGGAAGAAAAGAATGGAGAAAGCAGCGCCGCGAAGTTTCAATCGAATCCTCTAGAT 358 ||||| | | || || ||||||| ||||||||||||||||||||||| | Sbjct 127 TTCGT----G----G-AT-----AA-CAGCGCCTTGAAGTTTCAATCGAATCCTCTAGCT 171 Query 359 TTCATGAAATCGAAGCTCGTTTTGTTAGTATCCCACGAGCTATCACTCTCAGGTGGACCT 418 |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 172 TTCATGAAATCGAAACTCGTTTTGTTAGTCTCCCACGAGCTATCACTCTCAGGAGGACCT 231 Query 419 TTGCTATTGATGGAATTGGCGTTTTTGTTAAGAGGAGTTGGTGCTGACGTTGTTTGGATC 478 |||| || |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 232 CTGCTCTTAATGGAATTGGCGTTTTTGTTAAGAGGAGTTGGTGCTGAAGTTGTTTGGATC 291 Query 479 ACTAATCA-AAAGCCACTTGAAGATGATGAAGTTGTCTATAGTCTTGAACACAAGATGTT 537 |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 292 ACTAATCAGAAA-CCACTTGAAGAAGATGAAGTTGTCTATAGTCTTGAACACAAGATGTT 350 Query 538 GGATCGAGGAGTTCAGGTTATCTCTGCAAAGGGTCAGAAAGCTGTAGATACATCTCTCAA 597 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 351 AGACCGAGGAGTTCAGGTTATCTCTGCAAAGGGTCAGAAAGCTGTAGATACATCTCTCAA 410 Query 598 GGCTGATTTGATTGTTCTTAATACTGCTGTGGCTGGGAAATGGCTTGATGCTGTTCTAAA 657 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 411 GGCTGATTTGATTGTTCTTAATACTGCTGTGGCTGGGAAATGGCTGGATGCTGTTCTCAA 470 Query 658 AGAAAATGTTGTTAAAGTTCTACCTAAGATCCTATGGTGGATTCATGAGATGAGAGGACA 717 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 471 GGAAAATGTTGTTAAAGTTCTACCTAAGATCCTTTGGTGGATTCATGAGATGAGAGGACA 530 Query 718 CTATTTCAATGCTGATTTGGTCAAACACCTCCCCTTTGTTGCAGGGGCCATGATTGATTC 777 ||||| ||| | |||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 531 TTATTTTAATCCGGATTTGGTCAAACACCTCCCGTTTGTTGCAGGGGCTATGATTGATTC 590 Query 778 GCATGCAACAGCTGGATACTGGAAAAACAGAACACAAGCTCGCCTAGGGATTAAAATGCC 837 ||||||||| || | |||||||||||||||||| ||||||||| |||||||||| ||||| Sbjct 591 GCATGCAACGGCCGAATACTGGAAAAACAGAACTCAAGCTCGCTTAGGGATTAAGATGCC 650 Query 838 CAAAACTTACGTTGTGCACCTAGGAAATAGCAAGGAATTGATGGAAGTAGCTGAAGATAG 897 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 651 CAAAACTTACGTTGTGCACCTAGGAAATAGCAAGGATTTGATGGAAGTAGCTGAAGATAG 710 Query 898 TGTTGCCAAGAGAGTTCTCCGTGAGCACGTCCGAGAATCTCTTGGAGTGCGGAATGAAGA 957 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 711 TGTTGCCAAGAGAGTTCTCCGTGAGCACATCCGAGAATCTCTTGGAGTGCGGAATGAAGA 770 Query 958 CTTACTCTTTGGCATTATTAATAGTGTATCGCGTGGAAAAGGCCAGGATCTGTTCCTCCG 1017 |||||| ||||||||||| |||||||||||||| |||||||| ||||| ||||||||| | Sbjct 771 CTTACTGTTTGGCATTATCAATAGTGTATCGCGCGGAAAAGGGCAGGACCTGTTCCTCAG 830 Query 1018 AGCCTTCCACGAAAGTCTTGAAAGAATCAAAGAGAAGAAACTTCAGGTACCAACAATGCA 1077 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 831 AGCCTTCCACGAAAGTCTTGAAATAATCAGAGAGAAGAAACTTCAGGTACCAACAATGCA 890 Query 1078 TGCAGTAGTAGTAGGAAGCGACATGAGCAAGCAGACAAAGTTCGAGACAGAGCTACGCAA 1137 |||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| Sbjct 891 TGCAGTAGTAGTAGGAAGTGACATGAGCCGGCAGACAAAGTTCGAGACAGAACTACGCAA 950 Query 1138 CTTTGTCCGAGAAAAGAAACTTGAGAACTTTGTCCACTTCGTCAACAAAACTCTAACCGT 1197 |||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||| ||| Sbjct 951 CTTTGTCCTAGAAAAAAAACTTGAGAACTTTATCCACTTTGTCAACAAAACTCTAAGCGT 1010 Query 1198 AGCACCATATATAGCAGCCATAGACGTTCTTGTCCAAAACTCCCAAGCCAGAGGAGAATG 1257 ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1011 AGCGCCATATATAGCAGCCATAGACGTTCTTGTCCAGAACTCCCAAGCCAGAGGAGAGTG 1070 Query 1258 CTTTGGGAGAATAACAATCGAAGCCATGGCCTTTAAGCTACCTGTACTTGGTACTGCAGC 1317 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1071 CTTTGGGAGAATAACAATCGAGGCCATGGCCTTTAAGCTACCTGTACTTGGCACTGCAGC 1130 Query 1318 CGGAGGAACAATGGAGATTGTAGTGAATGGAACGACTGGTCTGTTACATAGTGCAGGGAA 1377 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1131 CGGAGGAACAATGGAGATTGTAGTGAATGGAACGACCGGTCTGTTACATAGTGCAGGGAA 1190 Query 1378 AGAAGGAGTGATACCTCTCGCCAAGAACATAGTGAAGTTGGCGACGCAAGTTGAGTTACG 1437 ||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||| Sbjct 1191 AGAAGGAGTGATACCTCTCGCTAAGAACATAGTGAAATTGGCAATGCAAGTTGAGTTACG 1250 Query 1438 GCTGAGAATGGGAAAAAATGGGTATGAGAGAGTAAAAGAGATGTTTTTGGAACATCATAT 1497 ||| | ||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||| Sbjct 1251 GCTAACAATGGGAAACAATGGTTATGAGAGGGTAAAGGAGATGTTTTTGGAACATCATAT 1310 Query 1498 GTCACATCGAATAGCTTCGGTACTCAAAGAAGTCTTGCAACACGCAAAGGCTCGTGCTTT 1557 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1311 GTCACATCGAATAGCTTCGGTACTCAAAGAAGTCTTGCAACACGCAAAGGCCCGTGCTTT 1370 Query 1558 ACGATGA 1564 ||||||| Sbjct 1371 ACGATGA 1377 > Ahg920921 jgi|Araly1|920921|scaffold_102202.1 Length=1485 Score = 1256 bits (680), Expect = 0.0 Identities = 1171/1399 (84%), Gaps = 69/1399 (5%) Strand=Plus/Plus Query 192 TGCA-AAGGAAGAGATGGGCACTGATGGTTTTGTT-GTTTCTATCTGTATCAACAGT-GT 248 |||| || |||||||||| | |||||| || | || |||| |||||||||||||||| | Sbjct 55 TGCAGAA-GAAGAGATGGCCTCTGATGATTCTCTTGGTTT-TATCTGTATCAACAGTAG- 111 Query 249 GTATGATTCTCGTGAGATCTAGC-TTTGAAACCTGTAGCATTAGTAGCCA-A-TTCGTGG 305 | ||||||||||||||||||| | ||||| ||||||| ||||| | | | | |||| Sbjct 112 GAATGATTCTCGTGAGATCTA-CTTTTGATTCCTGTAGTGTTAGTGGAAAGAGGT-GTGG 169 Query 306 --AAGA-AAAGAATGGAGAA-AGCA--G-CG--CCG--CGAA---GTTTC--AATC---G 346 ||| || ||| || || | || | || | | || ||||| ||| | Sbjct 170 CCGAGAGAAGGAA--GATAATAACAGTGACGTTAAGATCCAATCGGTTTCTGGATCGTTG 227 Query 347 AATCCTCTAGATTTCATGAAATCGAAGCTCGTTTTG-TTAGTATCCCACGAGCTATCACT 405 ||||| || | ||||||||||||||||||||||||| || || || |||||||| || || Sbjct 228 AATCCGCTCGGTTTCATGAAATCGAAGCTCGTTTTGCTT-GTTTCTCACGAGCTCTCGCT 286 Query 406 CTCAGGTGGACCTTTGCTATTGATGGAATTGGCGTTTTTG-TTAAGAGGAGTTG-GTGCT 463 |||||||||||||||| | || |||||||||||||||||| || |||||||||| | || Sbjct 287 CTCAGGTGGACCTTTGTTGTTAATGGAATTGGCGTTTTTGCTT-AGAGGAGTTGAAT-CT 344 Query 464 GACGTTGTTTGGATCACTAATCA-AAAGCCACTTGAAGATGATGAAGTTG-TCTATA-GT 520 || |||||||||||||| ||||| ||| ||| ||||||| ||||||| || || | | || Sbjct 345 GAAGTTGTTTGGATCACGAATCAGAAA-CCAGTTGAAGAAGATGAAG-TGATC-A-AGGT 400 Query 521 CTT-GAACACAAGATGTTGGATCGAGGAGTTCAGGTTATCTCTGCAAAGGGTCAGAAAGC 579 || |||||||||||||||||||||||||| |||||||| || |||||| |||||||||| Sbjct 401 TTTGGAACACAAGATGTTGGATCGAGGAGTGCAGGTTATATCAGCAAAGAGTCAGAAAGC 460 Query 580 TGTAGATACATCTCTCAAGGCTGATTTGATTGTTCTT-AATACTGCTGTGGCTGGGAAAT 638 | |||||||| |||| ||| |||||||| ||| | || ||||||||||| |||||||||| Sbjct 461 TATAGATACAGCTCTTAAGTCTGATTTGGTTG-TGTTGAATACTGCTGTTGCTGGGAAAT 519 Query 639 GGCTTGATGCTGTTCTAAAAGAAAATGTTGTTAAAGTTCTACCTAAGATCCTATGGTGGA 698 |||||||||| ||||| || || |||||| || |||||| || || || || ||||||| Sbjct 520 GGCTTGATGCAGTTCTCAAGGACAATGTTCCTATAGTTCTTCCCAAAATACTCTGGTGGA 579 Query 699 TTCATGAGATGAGAGGACACTATTTCAATGCTGATTTGGTCAAACACCTCCCCTTTGTTG 758 |||||||||||||||| ||||||||||| | ||||| ||||| ||||| || ||||||| Sbjct 580 TTCATGAGATGAGAGGTCACTATTTCAAACCGGATTTAGTCAAGCACCTTCCGTTTGTTG 639 Query 759 CAGGGGCCATGATTGATTCGCATGCAACAGCTGGATACTGGAAAAACAGAACACAAGCTC 818 |||| || ||||||||||| || |||||||||| ||||||||| || ||||| || | || Sbjct 640 CAGGCGCTATGATTGATTCACACGCAACAGCTGAATACTGGAAGAATAGAACTCATGATC 699 Query 819 GCCTAGGGATTAAAATGCCCAAAACTTACGTTGTGCACCTAGGAAATAGCAAGGAATTGA 878 || |||||||||||||||| |||||||| || ||||||||||||||||||||||| |||| Sbjct 700 GCTTAGGGATTAAAATGCCTAAAACTTATGTCGTGCACCTAGGAAATAGCAAGGAGTTGA 759 Query 879 TGGAAGTAGCTGAAGATAGTGTT-GCCAAGAGA-GTTCTCCGTGAGCACGTCCGAGAATC 936 ||||||||||||||||||| ||| ||||||| | |||||||||||||| || |||||||| Sbjct 760 TGGAAGTAGCTGAAGATAG-GTTCGCCAAGA-ATGTTCTCCGTGAGCAAGTTCGAGAATC 817 Query 937 TCTTGGAGTGCGGAATGAAGACTTACTCTTTGGCATTATTAATAGTGTATCGCGTGGAAA 996 |||||||| | ||||||||||| |||| ||||||||||||||||||||||| || ||||| Sbjct 818 TCTTGGAGCGAGGAATGAAGACATACTATTTGGCATTATTAATAGTGTATCTCGAGGAAA 877 Query 997 AGGCCAGGATCTGTTCCTCCGAGCCTTCCACGAAAGTCTTGAAAG-AATCAAAGAG---A 1052 ||||| ||||| ||||||||| ||||| | ||||||||| |||| |||||||||| | Sbjct 878 GGGCCAAGATCTATTCCTCCGATCCTTCTATGAAAGTCTT-AAAGTAATCAAAGAGACTA 936 Query 1053 AGAAACTTCAGGTACCAACAATGCATGCAGTAGTAGTAGGAAGCGACATGAGC-AAGCAG 1111 |||||||| |||||||||||||||||||||| ||||||||||| || |||||| | ||| Sbjct 937 AGAAACTTGAGGTACCAACAATGCATGCAGTGGTAGTAGGAAGTGATATGAGCGCA-CAG 995 Query 1112 AC-AAAGTTCGAGACAGAGCTACGCAACTTTGTCCGAGAAAAGAAACTTGAGAACTTTGT 1170 || ||| |||||||||||| ||||||||||||||| ||| ||||||||| |||| |||| Sbjct 996 ACGAAA-TTCGAGACAGAGTTACGCAACTTTGTCCAAGAGAAGAAACTTCAGAAAATTGT 1054 Query 1171 CCACTTCGTCAACAAAACTCT-AACCGTAGCACCATATATAGCAGCCATAGACGTTCTTG 1229 |||||| || |||||||| | || |||||||||||| |||| || || || ||||||| Sbjct 1055 CCACTTTGTTAACAAAACAATGAA-AGTAGCACCATATCTAGCGGCTATTGATGTTCTTG 1113 Query 1230 TCCAAAACTCCCAAGCCAGAGGAGAATGCTTTGGGAGAATAACAATCGAAGCCATGGCCT 1289 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1114 TCCAAAACTCCCAAGCCAGAGGAGAATGCTTTGGGAGAATAACAATCGAAGCTATGGCCT 1173 Query 1290 TTAAGCTACCTGTACTTGGTACTGCAGCCGGAGGAACAATGGAGATTGTAGTGAATGGAA 1349 ||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||| Sbjct 1174 TTAAGCTTCCTGTACTTGGGACTGCAGCAGGAGGGACAATGGAGATTGTAGTGAACAGAA 1233 Query 1350 CGACTGGTCTGTTACATAGTGCAGGGAAAGAAGGAGTGATACCTCTCGCCAAGAACATAG 1409 | || ||||| ||||| | | || ||||| || ||| ||||||| || || ||||| | Sbjct 1234 CAACCGGTCTATTACACAACACCGGTAAAGATGGCGTGTTACCTCTTGCTAAAAACATTG 1293 Query 1410 TGAAGTTGGCGACGCAAGTTG-AGTT-ACGGCTGAGAATGGGAAA-AAATGGGTATGAGA 1466 ||||| ||||||| || || || | | || || |||||| || ||| ||||| |||| Sbjct 1294 TGAAGCTGGCGACT-AACATGGAGATGA-GGAGGACAATGGGGAAGAAA-GGGTACGAGA 1350 Query 1467 GAGTAAAAGAGATGTTTTTGGAACATCATATGTCACATCGAATAGCTTCGGTACTCAAAG 1526 | |||||||||||||| ||||||||||||||||| |||||||||||||| || |||| || Sbjct 1351 GGGTAAAAGAGATGTTCTTGGAACATCATATGTCTCATCGAATAGCTTCTGTGCTCAGAG 1410 Query 1527 AAGTCTTGCAACACGCAAA 1545 |||| |||||||||||||| Sbjct 1411 AAGTGTTGCAACACGCAAA 1429 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65667582380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5