BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75430.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909166 jgi|Araly1|909166|Al_scaffold_0002_2247 1454 0.0
> Ahg909166 jgi|Araly1|909166|Al_scaffold_0002_2247
Length=873
Score = 1454 bits (787), Expect = 0.0
Identities = 845/873 (97%), Gaps = 4/873 (0%)
Strand=Plus/Plus
Query 94 ATGGAGGATTTTAGGGTAAGACATGAGTGTTCATCTCTCCGTGGTACTTTGTTGGATTCA 153
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAGTTTAGGGTAAGACATGAGTGTTCATCTCTCCGTGGTACTTTGTTGGATTCA 60
Query 154 AGATATGCTAAGGCAGTGCAATGCCTTGTAGAAGAAGTTATCGATATAGGTGGTAGAGAG 213
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AGATATGCAAAGGCAGTGCAATGCCTTGTAGAAGAAGTTATTGATATAGGTGGTAGAGAG 120
Query 214 GTTGAGCTTTGCAACAACATTCTAAT-CAATCAGCTGTTTCCAGGAAGGAGAAGACCCGG 272
|||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||
Sbjct 121 GTTGAGCTTTGCAACAACATTCTAATCCAA-CAGCTGTTTCCAGGAAGAAGAAGACCCGG 179
Query 273 -TTTTGCTTTGTCTTCCGAAATCAAATCCGAACTTTGCAGTTCTGGTTTCATGTCTTTGC 331
||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 CTTTGGC-TTGTCTTCCGAAATCAAATCCGAATTTTGCAGTTCTGGTTTCATGTCTTTGC 238
Query 332 CTGAGAATCATGAGATTCATATCAAAATCACAAAGCTTCTCAGTTTGTTGCAACAGGTAG 391
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 239 CTGAGAATCATGAGATTCATATCAAAATCACCAAGCTTCTCAGTTTGCTGCAACAGGTAG 298
Query 392 AAGAAAGATTTGAGCAGTACTGCAATCAACTGGAGCAAGTGATTTCATCATTTGAGGAAA 451
||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 299 AAGAAAGATTTGACCTGTACTGCAATCAATTGGAGCAAGTGATTTCATCATTTGAGGAAA 358
Query 452 TAGCAGGAGAAGGATCATCTAAAGTGTACACCGGTTTAGCTCTCCAAGCCATGACTCGAC 511
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 TAGCAGGAGAAGGATCATCTAAAGTATACACCGGTTTAGCTCTCCAAGCCATGACTCGAC 418
Query 512 ATTTCGGTAGTCTTGAAGAAGCAATAATCTCTCAGCTAAACTCTGTTCGTCGGAGATTCA 571
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 419 ATTTCGGTAGTCTTGAAGAAGCAATAATCTCTCAGCTCAACTCTGTTCGTCGGAGTTTCA 478
Query 572 TCATTTCTCATCAAGATGTTCCCAAGATCATCAGCTCTGGCTTATCACAGCTCAGCTTGT 631
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 TCATTTCTCATCAAGATGTTCCTAAGATCATCAGCTCTGGCTTATCACAGCTCAGCTTGT 538
Query 632 TCGATGGGAACACCACTTCATCATCACTTCAGCGACTTGGTTTGGTTCAAGGACCACAGA 691
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 TCGATGGGAACAACACTTCATCATCCCTTCAGCGACTTGGTTTGGTTCAAGGACCACAGA 598
Query 692 GACATGCTTGGAAACCCATCAGAGGCTTGCCTGAGACTTCCGTTGCAATTCTCCGAGCTT 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GACATGCTTGGAAACCCATCAGAGGCTTGCCTGAGACTTCCGTTGCAATTCTCCGAGCTT 658
Query 752 GGCTCTTTCAACATTTCTTGCACCCTTATCCGAATGAAGCAGAGAAGCTGGTGTTGGCGT 811
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGCTCTTTCAGCATTTTTTACACCCTTATCCGAATGAAGCAGAGAAGCTGGTGTTGGCGT 718
Query 812 CTCAAACAGGACTTTCGAAGAACCAAGTATCAAATTGGTTTATAAATGCTCGAGTTCGAC 871
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 719 CTCAAACAGGACTTTCCAAGAACCAAGTATCAAATTGGTTTATAAATGCTCGGGTTCGAC 778
Query 872 TCTGGAAACCGATGATAGAAGAGATGTATAGAGAGGAATTTGGAGATTCCTTAGATGAAT 931
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 779 TCTGGAAACCGATGATAGAAGAGATGTATAGAGACGAATTTGGAGATTCCTCAGATGAAT 838
Query 932 CAATGCAAAGAGAAGCCAATGATGATTCAAACT 964
|||||||||||||||||||||||||||||||||
Sbjct 839 CAATGCAAAGAGAAGCCAATGATGATTCAAACT 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5