BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75460.1
Length=1879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476696 jgi|Araly1|476696|fgenesh2_kg.2__1826__AT1G75460.1 1299 0.0
Ahg888054 jgi|Araly1|888054|Al_scaffold_0007_40 481 1e-134
Ahg905790 jgi|Araly1|905790|Al_scaffold_0003_2918 412 4e-114
Ahg949441 jgi|Araly1|949441|scaffold_801328.1 374 2e-102
Ahg936587 jgi|Araly1|936587|scaffold_500778.1 374 2e-102
Ahg927517 jgi|Araly1|927517|scaffold_203078.1 364 1e-99
Ahg327886 jgi|Araly1|327886|fgenesh1_pm.C_scaffold_7000113 252 8e-66
> Ahg476696 jgi|Araly1|476696|fgenesh2_kg.2__1826__AT1G75460.1
Length=1604
Score = 1299 bits (703), Expect = 0.0
Identities = 845/911 (93%), Gaps = 19/911 (2%)
Strand=Plus/Plus
Query 41 CAAATAATGTAAT-AAACCC--TCTTTTTTGTATTCTCTGATTACTTCG--TC-TCTTCC 94
||||| ||||||| |||||| | |||||||||| |||||||||||||| || ||||||
Sbjct 28 CAAAT-ATGTAATAAAACCCTTTTTTTTTTGTATACTCTGATTACTTCGTCTCTTCTTCC 86
Query 95 CCTGTAATGGCGCTTCCACACGTAGTCTCTTCACCTTCTTCAACTTCATTATCTCCTTCC 154
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 87 CCTGTAATGGCGCTTCCACACGTAGTCTCTTCACCTTCTTCAACTTCATTGTCTCCTTCC 146
Query 155 TTCAAATCCAAACCACCGTTTCACTCCCTTAGATCTTTATCACCGACGGTTGATAATCGC 214
||||||||| || | | ||| ||||||||||| |||| ||||| |||||||||||
Sbjct 147 TTCAAATCC-AA--A-C----CAC-CCCTTAGATCTCTATCTCCGACACTTGATAATCGC 197
Query 215 CGGCGTTGTAAACTCAACAGTTCCTTCCGATGTTCATCTTCTTCATTCTCCGAGAAGCAT 274
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CGGCGTTGTAAGCTCAACAGTTCCTTCCGATGTTCATCTTCTTCATTCTCCGAGAAGCAT 257
Query 275 --C-ACAACGCGAAATCTCCAAAATCCGATGATATCGTCGAGCTTCCTCTGTTTCCACTC 331
| ||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 258 CACAACAACGCCAAATATCCGAAATCCGATGACATCGTCGAGCTTCCTCTGTTTCCACTA 317
Query 332 CCACTCGTTCTCTTCCCCGGAGCAATCCTTCCTCTTCAGATCTTCGAATTCCGTTACCGT 391
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 318 CCACTCGTTCTCTTCCCCGGAGCAATCCTCCCTCTTCAGATCTTCGAATTCCGTTACCGT 377
Query 392 ATCATGATGCACACGCTCCTCCAATCTGATCTACGATTCGGCGTAGTTTACTCCGATTCC 451
|||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||||
Sbjct 378 ATCATGATGCACACTCTCCTCCAATCCGATCTCCGATTCGGCGTCGTTTACTCTGATTCA 437
Query 452 GTCTCTGGCTCCGCCGCAGAAGTAGGATGTGTAGGAGAAGTCGTGAAACACGAGCGTCTC 511
||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||
Sbjct 438 GTCTCTGGCTCCGCCGCAGAAGTCGGATGCGTCGGCGAAGTCGTGAAACACGAGCGTCTT 497
Query 512 GTCGATGATCGATTCTTTCTAGTCTGCAAAGGTCAAGAACGATTCCGAGTCACGAATGTC 571
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 498 GTCGATGATCGATTCTTCCTAGTCTGCAAAGGTCAAGAACGATTCCGAGTCACGAATCTC 557
Query 572 GTTCGTACGAAACCCTACCTTGTCGGAGAAGTCACGTGGCTTGAAGATCGTCCTTCCGGT 631
|| || | |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GTCCGCAAGAAACCTTACCTTGTCGGAGAAGTCACGTGGCTTGAAGATCGTCCTTCCGGT 617
Query 632 GAAGAAAATCTTGATTCGTTAGCTAATGAAGTCGAAGTTCTAATGAAAGAAGTGATTAGG 691
||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||| ||
Sbjct 618 GAAGAGAATCTTGATTCGTTAGCGAATGAAGTCGAAGTGCTGATGAAAGAAGTGATTCGG 677
Query 692 TTATCGAATAGATTGAATGGTAAGGCTGAGAAAGAAGTTCAAGATCTGAGGAGGAATCAG 751
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 678 TTATCGAATAGATTGAATGGGAAGGCTGAGAAAGAAGTTCAAGATCTGAGGAGGAATCAG 737
Query 752 TTTCCGACGCCGTTTTCGTTCTTCGTCGGAAGTACGTTTGAAGGAGCTCCTAGAGAGCAG 811
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TTCCCGACGCCGTTCTCGTTCTTCGTCGGAAGTACGTTTGAAGGAGCTCCTAGAGAGCAG 797
Query 812 CAAGCGTTGCTTGAGCTTGAAGATACGGCAGCTAGGTTAAAAAGAGAAAGAGAGACTTTG 871
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||
Sbjct 798 CAAGCGTTGCTTGAGCTTGAAGATACTGCGGCTAGGTTAAAGAGAGAAAGAGAGACGTTG 857
Query 872 AGGAATACACTTAATTATTTGACTGCAGCTTCTGCTGTTAAAGATGTGTTTCCTTCATCA 931
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 858 AGGAATACACTTAATTATTTGACTGCTGCTTCTGCTGTTAAAGATGTGTTTCCTTCGTCG 917
Query 932 TCTTAGTGTGT 942
||||||| |||
Sbjct 918 TCTTAGTATGT 928
Score = 339 bits (183), Expect = 6e-92
Identities = 251/283 (89%), Gaps = 7/283 (2%)
Strand=Plus/Plus
Query 1590 GTTTAGGGTTTAGCAGAGTGACTCTGGTGGTG----TTTCGAGTCAAGATAGTCTCTATC 1645
|||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1323 GTTTAGGGTTGAGCAGAGTGAGTCTGGTGGTGTTTCTTTCGAGTCAAGATAGTCTCTATC 1382
Query 1646 GATTCAAATTGCTACACCAAACATATATTTTCGAACTTTTCTGCTATAAGAATTAACAAG 1705
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1383 GATTCATATTGCTACACCAAACATATATTTTTGAACTTTTCTGCTATAAGAATTAAAAAG 1442
Query 1706 TGTTCGCGACAAGAAGATGATTTCTGTTACAAA-CTCTGTTTTTACGGCTCCATGTTCTG 1764
||| ||||| |||||||||||||| |||||| ||||||||||| ||||||||||| ||
Sbjct 1443 TGTCCGCGAGAAGAAGATGATTTCGGTTACAGCTCTCTGTTTTTATGGCTCCATGTTTTG 1502
Query 1765 TTTTTCTTCAAAGCATCTTGTG-TAATTAACAAAGGTTTTTTGGTGAATATAATTTGGCA 1823
|||||||||||| || || | ||| ||| ||||||||||||||||||||||||| ||
Sbjct 1503 TTTTTCTTCAAAA-ATATTTTCATAAATAAGAAAGGTTTTTTGGTGAATATAATTTTACA 1561
Query 1824 TTCAAAACTTATGTACACGAGTTGTTTCCTTTGCCATaaaaaa 1866
| |||| |||||||||| |||||||||| |||||||||||||
Sbjct 1562 TAAAAAATTTATGTACACTAGTTGTTTCCGTTGCCATAAAAAA 1604
Score = 261 bits (141), Expect = 1e-68
Identities = 309/383 (81%), Gaps = 39/383 (10%)
Strand=Plus/Plus
Query 1000 TATATTGAGCTTTGTCAGTAATTGAATATACGAAACTTATGAAAACCTGCAAAGTTGTGA 1059
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 940 TATATTGAGCTTTGTCAGTAATTGAATATACGAAACTTATGAAAAACTGCAAAGTTATGA 999
Query 1060 AAGTGTAATTGCCTTTGTAATACGGTGATTTTGGTGGTATTAGTATATGTTTTGAAGGTT 1119
||| | || || || ||| ||| | ||||||| ||||||||| ||||
Sbjct 1000 G-GTG-A-TT---TTGGT-----GGT-ATTAT------ATTAGTAGATGTTTTGAGGGTT 1041
Query 1120 TTTATAGGATTTATAGCTGAATTGATCACAAAAATGTTGTGGTTTACTTGAGTTAGC-TT 1178
|| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||| ||
Sbjct 1042 TTGATAGGATTTATAGCTTAATTGATCACAAAAGTGTTGTGCTTTTCTTGAGTTAGCATT 1101
Query 1179 CCAAAGTGGAAA-CCTAGAGAATC-TGCTATGTCAACAATTCCTAA-TAGAGAGAGATGT 1235
| |||| ||| |||||| | | ||||||||||||||||| | |||| || | |
Sbjct 1102 T-ACAGTG-AAAGCCTAGATTA-CATGCTATGTCAACAATTC-TGCGTAGACTGATTT-T 1156
Query 1236 TCACTAA--ACCA-GGGAATGTCAAAACTGCTACGACTCATATAGAGACTAAGTAGTGTT 1292
| | ||| | | |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1157 TGA-TAAGTAGAAAGGGA-TGTCAAGACTGCTACGACTCATATAGAGACTAAGTAGTGTT 1214
Query 1293 GGTTGCTTTATCTACATACTATAGACTTATGGTACTTGTATCAGTTTCGTTGCAACTATG 1352
||||||||| |||| || | || ||||||||||||||||||| |||||||| |||
Sbjct 1215 GGTTGCTTTGTCTA--TAG----GCCT-ATGGTACTTGTATCAGTTTTGTTGCAACAATG 1267
Query 1353 GTACTGGTTTAATTATCTTTGGT 1375
|||||| | ||||| |||||||
Sbjct 1268 GTACTGAATAAATTAGCTTTGGT 1290
> Ahg888054 jgi|Araly1|888054|Al_scaffold_0007_40
Length=624
Score = 481 bits (260), Expect = 1e-134
Identities = 485/591 (82%), Gaps = 25/591 (4%)
Strand=Plus/Plus
Query 236 TCCTTCCGATGTTCATCTTCTTCATTCTCCGAGAAGCATCACAACGCGAAATCTC-CAAA 294
||||||||||||||||| || || |||||||||||||| ||||||||| |||| | | |
Sbjct 47 TCCTTCCGATGTTCATCCTCCTCCTTCTCCGAGAAGCACCACAACGCG-AATC-CGCGAT 104
Query 295 ATCCGATGATATCGTCGAGCTTCCTCTGTTTCCACTCCCACTCGTTCTCTTCCCCGGAGC 354
||| |||| | || ||||||||||| || ||||| | ||||||||||||||||| ||
Sbjct 105 ATCAAATGACCTAGTAGAGCTTCCTCTCTTCCCACTAACTCTCGTTCTCTTCCCCGGCGC 164
Query 355 AATC-CTTCCTCTTCAGATCTTCGAATTCCGTTACCGTA-TCATGATGCACACGCTCCTC 412
|| | |||| |||||||||||||| ||||||||||| | |||||||||| ||||| ||
Sbjct 165 AA-CAATTCCGCTTCAGATCTTCGAGTTCCGTTACCG-AGTCATGATGCAGACGCTTGTC 222
Query 413 CAATCTGATCTAC-GATTCGGCGTAGTTTACTCCGATTCCGTCTCTGGCTCCGCCGC-AG 470
||||| ||||| | |||||||||| || |||||||| |||| || || ||||| || |
Sbjct 223 CAATCCGATCT-CAGATTCGGCGTTGTCTACTCCGACGCCGTTTCAGGTTCCGCAGCTGG 281
Query 471 AAGTAGGATGTGTAGGAGAAGTCGTGAAACACGAGCGTCTCGTCGATGATCGATTCTTTC 530
|| | || || || |||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 282 AA-TCGGTTGCGTCGGAGAAATCGTGAAGCACGAGCGTCTCGTCGATGATCGATTCTT-C 339
Query 531 T-AGTCTGCAAAGGTCAAGAACGATTCCGAGTCAC-GAATGTCGTTCGTACGAAACCCTA 588
| | |||| |||||||| |||||||| || ||||| || | |||| ||||||||||| ||
Sbjct 340 TTAATCTGTAAAGGTCAGGAACGATTTCGCGTCACAGA-TCTCGTCCGTACGAAACCTTA 398
Query 589 CCTTGTCGGAGAAG-TCACGTGGCTTGAAGATCGTCCTTCCGGTGAAGAAAATCTTGATT 647
||| |||| |||| | ||||||||||||||||| || ||||| ||||| ||||| ||
Sbjct 399 CCTCGTCGC-GAAGGTGACGTGGCTTGAAGATCGACCGTCCGGGGAAGAGAATCTGGA-- 455
Query 648 CG--TTAGCTAATGAAGTCGAAGTTCTAATGAAAGAAGTGATTAGGTTATCGAATAGATT 705
|| || || || || || || ||| | |||| |||||||||| | || |||||||||||
Sbjct 456 CGAATTGGCGAACGAGGTTGAGGTTTTGATGATAGAAGTGATTCGATTGTCGAATAGATT 515
Query 706 GAATGGTAAGGCTGAGAAAGAAGT-TCAAGATCTGAGGAGGAATCAGTTTCCGACGCCGT 764
|||||| || | || || ||| | ||| |||||||||| ||||||||||||||| ||||
Sbjct 516 GAATGGGAAACCAGATAAGGAA-TCTCAGGATCTGAGGAAGAATCAGTTTCCGACTCCGT 574
Query 765 TTTCGTTCTTCGTCGGAAGTACGTTTGAAGGAGCTCCTA-GAGAGCAGCAA 814
| ||||| ||||||||||| ||||||||||||||||| | | |||||||||
Sbjct 575 TCTCGTTTTTCGTCGGAAGCACGTTTGAAGGAGCTCCGATG-GAGCAGCAA 624
> Ahg905790 jgi|Araly1|905790|Al_scaffold_0003_2918
Length=549
Score = 412 bits (223), Expect = 4e-114
Identities = 452/560 (81%), Gaps = 26/560 (5%)
Strand=Plus/Plus
Query 268 GAAGCATCACAACGCGAAAT-CTCCAAAATCCGATGATATCGTCGAGCTTCCTCTGTTTC 326
|||||| ||||||||| ||| | || ||||| ||||| | || ||||||||||| || |
Sbjct 3 GAAGCACCACAACGCG-AATCCGCCCAAATCAGATGACCTAGTAGAGCTTCCTCTCTTCC 61
Query 327 CACTCCCACTCGTTCTCTTCCCCGGAGCAATC-CTTCCTCTTCAGATCTTCGAATTCCGT 385
|||| || ||||||||||||||||| |||| | | || |||||||| || || ||||||
Sbjct 62 CACTACCTCTCGTTCTCTTCCCCGGCGCAA-CAATCCCGCTTCAGATTTTTGAGTTCCGT 120
Query 386 TACCGTA-TCATGATGCACACGCTCCTCCAATCTGATCTAC-GATTCGGCGTAGTTTACT 443
||||| | |||||||||| ||||| |||||||| ||||| | |||||||||| || ||||
Sbjct 121 TACCG-AGTCATGATGCAAACGCTTCTCCAATCCGATCT-CAGATTCGGCGTTGTCTACT 178
Query 444 CCGATTCCGTCTCTGGCTCCGCCGC-AGAAGTAGGATGTGTAGGAGAAGTCGTGAAACAC 502
|||| | || || || || | || ||| | || | || |||||| ||||||| |||
Sbjct 179 CCGACGCTGTTTCAGGTTCTGTAGCTGGAA-TCGGTTACGTCGGAGAAATCGTGAAGCAC 237
Query 503 GAGCGTCTCGTCGATGATCGATTCTTTCT-AGTCTGCAAAGGTCAAGAACGATTCCG-AG 560
|||||||||||||||||||||||||| || | |||| |||||||| |||| ||| || |
Sbjct 238 GAGCGTCTCGTCGATGATCGATTCTT-CTTAATCTGTAAAGGTCAGGAACAATTTCGCA- 295
Query 561 TCACGAATGTCGTTCGTACGAAACCCTACCTTGTCG-GAGAAGTCACGTGGCTTGAAGAT 619
||||| || |||| ||||||||||| ||||| |||| || |||| |||||||||||||||
Sbjct 296 TCACGGATCTCGTCCGTACGAAACCTTACCTCGTCGCGA-AAGTGACGTGGCTTGAAGAT 354
Query 620 CGTCCTTCCGGTGAAGAAAATCTTGATTCG--TTAGCTAATGAAGTCGAAG-TTCTAATG 676
|| || ||||||||||| ||||| || || || || || || || || | || | |||
Sbjct 355 CGACCGTCCGGTGAAGAGAATCTGGA--CGAATTGGCGAACGAGGTTGAGGCTT-TGATG 411
Query 677 AAAGAAGTGATTAGGTTATCGAATAGATTGAATGGTAAGGCTGAGAAAGAAGT-TCAAGA 735
|||||||||||| | || ||||||||||||||||| || | || || ||| | ||| ||
Sbjct 412 AAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAA-TCTCAGGA 470
Query 736 TCTGAGGAGGAATCAGTTTCCGACGCCGTTTTCGTTCTTCGTCGGAAGTACGTTTGAAGG 795
|||||||| ||||||||||||||| ||||| ||||| || || || || |||||||||||
Sbjct 471 TCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTTTTTGTTGGTAGCACGTTTGAAGG 530
Query 796 AGCTCCTA-GAGAGCAGCAA 814
|||||| | | |||||||||
Sbjct 531 AGCTCCAATG-GAGCAGCAA 549
> Ahg949441 jgi|Araly1|949441|scaffold_801328.1
Length=518
Score = 374 bits (202), Expect = 2e-102
Identities = 385/471 (82%), Gaps = 22/471 (5%)
Strand=Plus/Plus
Query 375 TCGAATTCCGTTACCGTA-TCATGATGCACACGCTCCTCCAA-TCTGATCTAC-GATTCG 431
|||| ||||||||| | | |||||||||| ||||| |||||| || ||||| | ||||||
Sbjct 1 TCGAGTTCCGTTACTG-AGTCATGATGCAAACGCTTCTCCAATTC-GATCT-CAGATTCG 57
Query 432 GCGTAGTTTACTCCGATTCCGTCTCTGGCTCCGCCGC-AGAAGTAGGATGTGTAGGAGAA 490
|||| || |||||||| |||| || || ||||| || ||| | || || || ||||||
Sbjct 58 GCGTTGTCTACTCCGACGCCGTTTCAGGTTCCGCAGCTGGAA-TCGGTTGCGTCGGAGAA 116
Query 491 GTCGTGAAACACGAGCGTCTCGTCGATGATCGATTCTTTCT-AGTCTGCAAAGGTCAAGA 549
||||||| ||||||||||||||||||||||||||||| || | |||| |||||||| ||
Sbjct 117 ATCGTGAAGCACGAGCGTCTCGTCGATGATCGATTCTT-CTTAATCTGTAAAGGTCATGA 175
Query 550 ACGATTCCGAGTCACGAATGTCGTTCGTACGAAACCCTACCTTGTCGGAGAAG-TCACGT 608
|||||| || |||||| || |||| | ||||||||| ||||| |||| |||| | ||||
Sbjct 176 ACGATTTCGCGTCACGGATCTCGTCCATACGAAACCTTACCTCGTCGC-GAAGGTGACGT 234
Query 609 GGCTTGAAGATCGTCCTTCCGGTGAAGAAAATCTTGATTCG--TTAGCTAATGAAGTCGA 666
||||||||||||| || || |||||||| ||||| || || || || || || || ||
Sbjct 235 GGCTTGAAGATCGACCGTCTGGTGAAGAGAATCTGGA--CGAATTGGCGAACGAGGTTGA 292
Query 667 AGTTCTAATGAAAGAAGTGATTAGGTTATCGAATAGATTGAATGGTAAGGCTGAGAAAGA 726
||| | ||||||||||||||| | || ||||||||||||||||| || | || || ||
Sbjct 293 GGTTTTGATGAAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGA 352
Query 727 AGT-TCAAGATCTGAGGAGGAATCAGTTTCCGACGCCGTTTTCGTTCTTCGTCGGAAGTA 785
| | ||| |||||||||| ||||||||||||||| ||||| ||||| ||| | || || |
Sbjct 353 A-TCTCAGGATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTTTTCATTGGTAGCA 411
Query 786 CGTTTGAAGGAGCTCCTA-GAGAGCAGCAAGCGTTGCTTG-AGCTTGAAGA 834
|||||||||||||||| | | ||||||||||||||| ||| ||||||||||
Sbjct 412 CGTTTGAAGGAGCTCCAATG-GAGCAGCAAGCGTTG-TTGGAGCTTGAAGA 460
> Ahg936587 jgi|Araly1|936587|scaffold_500778.1
Length=518
Score = 374 bits (202), Expect = 2e-102
Identities = 388/476 (82%), Gaps = 20/476 (4%)
Strand=Plus/Plus
Query 375 TCGAATTCCGTTACCGTA-TCATGATGCACACGCTCCTCCAATCTGATCTAC-GATTCGG 432
|||| ||||||||| | | |||||||||| ||||| |||||||| ||||| | ||||||
Sbjct 1 TCGAGTTCCGTTACTG-AGTCATGATGCAAACGCTTCTCCAATCCGATCT-CAGATTCGA 58
Query 433 CGTAGTTTACTCCGATTCCGTCTCTGGCTCCGCCGC-AGAAGTAGGATGTGTAGGAGAAG 491
||| || |||||||| |||| || || | ||| || ||| | || || || ||||||
Sbjct 59 CGTTGTCTACTCCGACGCCGTTTCAGGTTTCGCAGCTGGAA-TCGGCTGCGTCGGAGAAA 117
Query 492 TCGTGAAACACGAGCGTCTCGTCGATGATCGATTCTTTCT-AGTCTGCAAAGGTCAAGAA 550
||||||| ||||||||||||||||||||||||||||| || | |||| |||||||| |||
Sbjct 118 TCGTGAAGCACGAGCGTCTCGTCGATGATCGATTCTT-CTTAATCTGTAAAGGTCAGGAA 176
Query 551 CGATTCCGAGTCACGAATGTCGTTCGTACGAAACCCTACCTTGTCGGAGAAG-TCACGTG 609
||||| || |||||| || |||| ||||||||||| ||||| |||| |||| | ||| |
Sbjct 177 CGATTTCGCGTCACGGATCTCGTCCGTACGAAACCTTACCTCGTCGC-GAAGGTGACGGG 235
Query 610 GCTTGAAGATCGTCCTTCCGGTGAAGAAAATCTTGATTCG--TTAGCTAATGAAGTCGAA 667
|||||||||||| || ||||||||||| ||||| || || || || || || || ||
Sbjct 236 GCTTGAAGATCGACCGTCCGGTGAAGAGAATCTGGA--CGAATTGGCGAACGAGGTTGAG 293
Query 668 GTTCTAATGAAAGAAGTGATT-AGGTTATCGAATAGATTGAATGGTAAGGCTGAGAAAGA 726
||| | |||||||||||| || | || ||||||||||||||||| || | || || ||
Sbjct 294 GTTTTGATGAAAGAAGTGGTTCAA-TTGTCGAATAGATTGAATGGGAAACCAGATAAGGA 352
Query 727 AGT-TCAAGATCTGAGGAGGAATCAGTTTCCGACGCCGTTTTCGTTCTTCGTCGGAAGTA 785
| | ||| |||||||||| ||||||||||||||| ||||| ||||| ||| | || || |
Sbjct 353 A-TCTCAGGATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTTTTCATTGGTAGCA 411
Query 786 CGTTTGAAGGAGCTCCTA-GAGAGCAGCAAGCGTTGCTTGAGCTTGAAGATACGGC 840
|||||||||||||||| | | ||||||||||||||||| ||||||||||| |||||
Sbjct 412 CGTTTGAAGGAGCTCCAATG-GAGCAGCAAGCGTTGCTGGAGCTTGAAGACACGGC 466
> Ahg927517 jgi|Araly1|927517|scaffold_203078.1
Length=518
Score = 364 bits (197), Expect = 1e-99
Identities = 382/469 (81%), Gaps = 22/469 (5%)
Strand=Plus/Plus
Query 381 TCCGTTACCGTA-TCATGATGCACACGCTCCTCCAATCTGATCTAC-GATTCGGCGTAGT 438
|||||||||| | |||||||||| ||||| | ||||| ||||| | |||||||||| ||
Sbjct 7 TCCGTTACCG-AGTCATGATGCAAACGCTTGTTCAATCCGATCT-CAGATTCGGCGTTGT 64
Query 439 TTACTCCGATTCCGTCTCTGGCTCCGCCGC-AGAAGTAGGATGTGTAGGAGAAGTCGTGA 497
|||||||| |||| || || ||||| || ||| | || || || |||||| ||||||
Sbjct 65 CTACTCCGACGCCGTTTCAGGTTCCGCAGCTGGAA-TCGGTTGCGTCGGAGAAATCGTGA 123
Query 498 AACACGAGCGTCTCGTCGATGATCGATTCTTTCT-AGTCTGCAAAGGTCAAG-AACGATT 555
| ||||||||||||||||||||||||||||| || | |||| |||||| | | |||||||
Sbjct 124 AGCACGAGCGTCTCGTCGATGATCGATTCTT-CTTAATCTGTAAAGGT-ATGGAACGATT 181
Query 556 CCGAGTCAC-GAATGTCGTTCGTACGAAACCCTACCTTGTCGGAGAAG-TCACGTGGCTT 613
|| ||||| || | |||| ||||||||||| ||||| |||| |||| | |||||||||
Sbjct 182 TCGCGTCACAGA-TCTCGTCCGTACGAAACCTTACCTCGTCGC-GAAGGTGACGTGGCTT 239
Query 614 GAAGATCGTCCTTCCGGTGAAGAAAATCTTGATTCG--TTAGCTAATGAAGTCGAAGTTC 671
|||||||| || ||||| ||||| ||||| || || || || || || || || |||
Sbjct 240 GAAGATCGACCGTCCGGGGAAGAGAATCTGGA--CGAATTGGCGAACGAGGTTGAGGTTT 297
Query 672 TAATGAAAGAAGTGATTAGGTTATCGAATAGATTGAATGGTAAGGCTGAGAAAGAAGT-T 730
| |||| |||||||||| | || ||||||||||||||||| || | || || ||| | |
Sbjct 298 TGATGATAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAA-TCT 356
Query 731 CAAGATCTGAGGAGGAATCAGTTTCCGACGCCGTTTTCGTTCTTCGTCGGAAGTACGTTT 790
|| |||||||||| ||||||||||||||| | ||| ||||| ||||||||||| ||||||
Sbjct 357 CAGGATCTGAGGAAGAATCAGTTTCCGACTCTGTTCTCGTTTTTCGTCGGAAGCACGTTT 416
Query 791 GAAGGAGCTCCTA-GAGAGCAGCAAGCGTTGCTTGAGCTTGAAGATACG 838
||||||||||| | | ||||||||||| ||||| ||||||||||| |||
Sbjct 417 GAAGGAGCTCCGATG-GAGCAGCAAGCATTGCTGGAGCTTGAAGACACG 464
> Ahg327886 jgi|Araly1|327886|fgenesh1_pm.C_scaffold_7000113
Length=435
Score = 252 bits (136), Expect = 8e-66
Identities = 244/295 (83%), Gaps = 12/295 (4%)
Strand=Plus/Plus
Query 395 ATGATGCACACGCTCCTCCAATCTGATCTAC-GATTCGGCGTAGTTTACTCCGATTCCGT 453
|||||||| ||||| |||||||| ||||| | |||||||||| || ||||||||| ||||
Sbjct 1 ATGATGCAAACGCTTCTCCAATCCGATCT-CAGATTCGGCGTTGTCTACTCCGATGCCGT 59
Query 454 CTCTGGCTCCGCCGC-AGAAGTAGGATGTGTAGGAGAAGTCGTGAAACACGAGCGTCTCG 512
|| || ||||| || |||| | || || || |||||| ||||||| |||||||||||||
Sbjct 60 TTCAGGTTCCGCAGCTAGAA-TCGGTTGCGTCGGAGAAATCGTGAAGCACGAGCGTCTCG 118
Query 513 TCGATGATCGATTCTTTCT-AGTCTGCAAAGGTCAAGAACGATTCCGAGTCACGAATGTC 571
|||||||||||||||| || | |||| |||||||| |||||||| || |||||| || ||
Sbjct 119 TCGATGATCGATTCTT-CTTAATCTGTAAAGGTCAGGAACGATTTCGCGTCACGGATCTC 177
Query 572 GTTCGTACGAAACCCTACCTTGTCGGAGAAG-TCACGTGGCTTGAAGATCGTCCTTCCGG 630
|| ||||||||||| ||||| |||| |||| | ||||||||||||||||| || |||||
Sbjct 178 GTCCGTACGAAACCTTACCTCGTCGC-GAAGGTGACGTGGCTTGAAGATCGACCGTCCGG 236
Query 631 TGAAGAAAATCTTGATTCG--TTAGCTAATGAAGTCGAAGTTCTAATGAAAGAAG 683
|||||| ||||| || || || || || || || |||||| | ||||||||||
Sbjct 237 TGAAGAGAATCTGGA--CGAATTGGCGAACGAGGTTGAAGTTTTGATGAAAGAAG 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581223985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5