BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75470.1
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316480 jgi|Araly1|316480|fgenesh1_pm.C_scaffold_2001513 1554 0.0
> Ahg316480 jgi|Araly1|316480|fgenesh1_pm.C_scaffold_2001513
Length=1167
Score = 1554 bits (841), Expect = 0.0
Identities = 1051/1151 (91%), Gaps = 20/1151 (2%)
Strand=Plus/Plus
Query 9 GTCAAATCCACAAGAACACTTTGTGCAAATAGCC-CTGGATATCGAGCACCGCCTAACCA 67
||| |||||||||||||| |||||||||||| || || |||||||||||||||||||||
Sbjct 24 GTCCAATCCACAAGAACAATTTGTGCAAATA-CCACTCAATATCGAGCACCGCCTAACCA 82
Query 68 CACCGATCAGCCTAACAAGTGACTCGAATCAGAGACGTAACCAGTGGGTTACCATCATCA 127
||||||||||| |||| ||||| |||||||||||||||||| |||||||||| |||||||
Sbjct 83 CACCGATCAGCTTAACCAGTGAATCGAATCAGAGACGTAACAAGTGGGTTACTATCATCA 142
Query 128 TATGCACCATCTTGGCCGTAACAGGTCAATGCATCGCTAGACTCCTCGAGAACTATTACT 187
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 143 TATGCACCATCTTGGCCGTAACAGGGCAATGCGTCGCTAGACTCCTCGAGAACTATTACT 202
Query 188 TCCTCCACAAAAACCTGAGCCGCCGCCGCGGTATCTTGACTCAAACACTTCTCCAAGTCG 247
||||||||| ||||| |||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 203 TCCTCCACAGAAACCGGAGCCGCCGCCGCGGTATCTTGACTCAACCACTTCTCCAGGTCG 262
Query 248 TCGGATTCCCCATCCTCCTTC-TCCCTTTCCTTCTCCACTTCCTCATCAAGAAACAGAAA 306
|||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 263 TCGGATTCCCCATCCT-CATCTTCCCTTTCCTTCTCCACTTCCTCATCAAGAAACAGAAA 321
Query 307 CAACTTCTCATTTTCTCCGGTGAAACCTCCCTCAAGCACTTAGCCATAACTTACTCTAT- 365
|||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| |
Sbjct 322 CAACTTCTCATTTTCTCCGGTGGAACCTCCTTCAAGCAATTAGCCATAACTTACTCT-TG 380
Query 366 TCTCTGCATCTACATGTTTTGTCAAGCATTTTTCTCCGACGTTAGAAACCAGATACCCTA 425
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 381 TCTCTGCATCTACATGTTTTGTCAAGCATTTTTCTTCAACGTTAGAAACCAGATACCCTT 440
Query 426 TAGAGTTTTCACTCTCA-CTTACACGACGCAGCTATTATTCACCCTGATTTTCTCCAAGT 484
||||||||||||||||| || ||||||||||||| ||||||||||||||||| |||| ||
Sbjct 441 TAGAGTTTTCACTCTCATCT-ACACGACGCAGCTCTTATTCACCCTGATTTTATCCACGT 499
Query 485 ATTACAACGATATCAAATTTAATAGATGGACGTTTATCTCTCTCATCTTAGCCGTCCTCG 544
||||||| | |||||||| |||||||||| | |||||||||||||||||||||||||||
Sbjct 500 GTTACAACAAAATCAAATTCAATAGATGGATGATTATCTCTCTCATCTTAGCCGTCCTCG 559
Query 545 CCGGCGCTTTCACTCTCTACACTTTCTCCGCCGGGTCACCCATCTACG---G--GAA-GA 598
| |||||||||||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 560 CTGGCGCTTTCACTCTCTACACTTTCTCCGCCGGGTCACCCATCTACGACAGCTGGACGA 619
Query 599 AATCCTACGGCTATGGAATTAT-TAATGTGGCTTTCGGCGCTGCCATCTTTTTCTCCTTG 657
||||| || | |||| ||| || ||||||||| |||||||| ||||||||||||
Sbjct 620 AATCCAACAAATGGGGAACTATCTA-TGTGGCTTTATGCGCTGCCGCCTTTTTCTCCTTC 678
Query 658 CTCCTCTGCATTATCAGGAAGGTGTTCGAGGAACTTATCTCT-TTCTGCAACACATCCAC 716
||||||||| |||||||| |||| ||||||||| |||||||| || ||||||||||||||
Sbjct 679 CTCCTCTGCGTTATCAGGCAGGTATTCGAGGAAGTTATCTCTATT-TGCAACACATCCAC 737
Query 717 CAACAGAAAACAACCCAGTTTCGTTGTCGTTCTCGAGATGATCATCTTCTTGTCTCTCGT 776
||||||||||| |||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 738 CAACAGAAAACGACCCAGTTTCGTCGTCGTTCTTGAGTTGATCATCTTCTTGTCTCTCGT 797
Query 777 CGTAACCATCATCTTAGTCGCAGCCGTTTTAATCTCTGGTGAACATCACGATATGAAGAA 836
||| |||||||||||||| |||||| || | ||||| |||||||||||| ||||||||||
Sbjct 798 CGTCACCATCATCTTAGTAGCAGCCATTCTCATCTCCGGTGAACATCACAATATGAAGAA 857
Query 837 AGAGATGGAAACGTTCACGAAGGGAGATATTGCCTACGTGAGGACTATGGTGGGTCAAGC 896
||||||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 858 AGAGATGGATAGGTTCACGAAGGGAGAGATTGCCTACGTGAGGACTATGGTAGGTCAAGC 917
Query 897 CGTTGCATGGCAGATCTACTGGGTCGGGATCGTGGGGCTAGTGTTCGCTGTCTCCGCCGT 956
||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||
Sbjct 918 CGTTGCATGGCAGATATACTGGGTCGGGATCGTGGGGCTCGCGTTCGCTGTCTCGGCCGT 977
Query 957 GTTCTCGAACGTGATCAGTGTCTGTACGTGGCCGATCGTGTCGCTTCTAGTGGCTT-TTT 1015
|||||||||||||||||| ||||||||||||||||||||||||||||| |||| || |||
Sbjct 978 GTTCTCGAACGTGATCAGCGTCTGTACGTGGCCGATCGTGTCGCTTCTCGTGGTTTGTTT 1037
Query 1016 TATATAACACGCACGATCATTTCGATGTCTTCAGAGGAATCGCCTTAGGCGCAGCTGCTC 1075
| ||| ||| | |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1038 T-TATGACAAGTACGATCATTTCGATGTCTTCAGAGGAATCGCCTTAGGCGCCGCTGCTC 1096
Query 1076 TTAGCGTCTCGTGTTATATCTATATTATTCACAAAGAGAAGAGCGACGATGATGACCAAT 1135
|||||||| | |||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 1097 TTAGCGTCGCCTGTTATATCTATATAATCCACAAAGAGAAGAGCGACGGTGATGACCAAT 1156
Query 1136 CCACAAGCTAA 1146
|||||||||||
Sbjct 1157 CCACAAGCTAA 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42735789957
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5