BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75490.1
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476698 jgi|Araly1|476698|fgenesh2_kg.2__1828__AT1G75490.1 1640 0.0
> Ahg476698 jgi|Araly1|476698|fgenesh2_kg.2__1828__AT1G75490.1
Length=1012
Score = 1640 bits (888), Expect = 0.0
Identities = 977/1019 (96%), Gaps = 9/1019 (1%)
Strand=Plus/Plus
Query 178 AATTCATAGTGATAAATCTTTTTATATTTCCCCAATCGCGGATGACCTTATCCATAtctc 237
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AATTCATAGTGATAAATCTTTTTATATTTCCCCAATCGCGTATGACCTTATCCATATCTC 60
Query 238 tctctctcttttctttttttttttGGAAAAATCTCAAACTCA--TCAATCTCTCTGCTGG 295
|||||||| | |||| ||||||| ||||||||||||||| || ||||||||||||
Sbjct 61 TCTCTCTC--GT-TTTTAATTTTTGG-AAAATCTCAAACTCATCTCTCTCTCTCTGCTGG 116
Query 296 TTTTACGATTACTGTTGCCaaaaaaaGAAGGGTCTCTCGAGACAAGTGTTAGGATTACAA 355
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 117 TTTTACGATTACTGTTGCCAAAAAGAGAAGGGTCTCTCGAGACAAGTGTTAAAATTACAA 176
Query 356 ACACAACACCAGCTTCCTCCTCTCGACACGACCCTCCGTCATGTCTGCGCCAGCTATATC 415
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ACACAACACCAGCTTCCTTCTCTCGACACGACCCTCCGTCATGTCTGCGCCAGCTATATC 236
Query 416 TTCTCCTCGCCACGTTTCATCACTCTCTTCTAGTATATATACACACCTAACCATTACCTC 475
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 237 TTCTCCTCGCCACGTTTCATCACTCTCTTCTAGTATATATACACACCTACCCATTACCTC 296
Query 476 ATGTCTTTGCCTTATCACTCACCAAAAGTCGTCACATAATATCACTTTCGAGTTATCAAC 535
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 297 ATGTCTTTGCCTTATCACTCACCAAAAGTCGTCACATAACATCACTTTCGAGTTGTCAAC 356
Query 536 ATCCGTACATGTCATCCATAGAGCCAAAAGTAATGATGGTTGGTGCTAATAAGAAACAAC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ATCCGTACATGTCATCCATAGAGCCAAAAGTAATGATGGTTGGTGCTAATAAGAAACAAC 416
Query 596 GAACCGTCCAAGCTAGTTCGAGGAAAGGTTGTATGAGAGGAAAAGGTGGACCCGATAACG 655
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 417 GAACCGTTCAAGCTAGTTCGAGGAAAGGCTGTATGAGAGGAAAAGGTGGCCCCGATAACG 476
Query 656 CGTCTTGCACTTACAAAGGTGTTAGACAACGCACTTGGGGCAAATGGGTCGCTGAGATCC 715
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CCTCTTGCACCTACAAAGGTGTTAGACAACGCACTTGGGGCAAATGGGTCGCTGAGATCC 536
Query 716 GCGAGCCTAACCGAGGAGCTCGTCTTTGGCTCGGTACCTTCGACACCTCCCGTGAAGCTG 775
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 537 GTGAGCCTAACCGAGGAGCTCGTCTTTGGCTAGGTACCTTCGACACCTCCCGCGAAGCTG 596
Query 776 CCTTGGCTTATGACTCCGCAGCTCGTAAGCTCTATGGGCCTGAGGCTCATCTCAACCTCC 835
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 597 CCTTGGCTTATGATTCCGCAGCTCGTAAGCTCTATGGGCCCGAGGCTCACCTCAACCTCC 656
Query 836 CTGAGTCCTTAAGAAGTTACCCTAAAACGGCGTCGTCTCCGGCGTCCCAGACTACACCAA 895
||||||||||||||||||||||| ||||||||||||||| ||||||||| || |||||||
Sbjct 657 CTGAGTCCTTAAGAAGTTACCCTGAAACGGCGTCGTCTCAGGCGTCCCATACGACACCAA 716
Query 896 GCAGCAACACCGGTGGAAAAAGCAGCAGCGACTCTGAGTCGCCGTGTTCATCCAACGAGA 955
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 717 GCAGCAACACCGGTGG-AAAA--AGCAGCGACTCTGAGTCGCCGTGTTCATCCAACGAGA 773
Query 956 TGTCATCATGTGGAAGAGTGACAGAGGAGATATCATGGGAGCATATAAACGTGGATTTGC 1015
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 774 TGTCATCATGTGGAAGAGTGACAGACGAGATCTCATGGGAGCATATAAACGTGGATTTGC 833
Query 1016 CGGTAATGGATGATTCTTCAATATGGGAAGAAGCTACAATGTCGTTAGGATTTCCATGGG 1075
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 834 CGGTAATGGATGATTCTTCTATATGGGAAGAAGCTACAATGTCGTTAGGGTTTCCATGGG 893
Query 1076 TTCATGAAGGAGATAATGATATTTCTCGGTTTGATACTTGTATTTCCGGTGGCTATTCTA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TTCATGAAGGAGATAATGATATTTCTCGGTTTGATACTTGTATTTCCGGTGGCTATTCTA 953
Query 1136 ATTGGGATTCCTTTCATTCCCCACTTTGAGGTGTCACTAGACTCTCTTTAATTGTTAAG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 954 ATTGGGATTCCTTTCATTCCCCACTTTGAGGTGTCACTAGACTCTCTTTAATTATTAAG 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44985042060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5