BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75510.1
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909175 jgi|Araly1|909175|Al_scaffold_0002_2256 1079 0.0
> Ahg909175 jgi|Araly1|909175|Al_scaffold_0002_2256
Length=783
Score = 1079 bits (584), Expect = 0.0
Identities = 722/788 (92%), Gaps = 11/788 (1%)
Strand=Plus/Plus
Query 107 ATGGAAGATATTCAT-AATCTCGATATAGAGAAAAGTGATAGATC-GATTTGGTTGATGA 164
|||||||| | |||| || |||||||| ||||||| ||||||| | ||||||||||||||
Sbjct 1 ATGGAAGACAGTCATGAA-CTCGATATGGAGAAAACTGATAGA-CGGATTTGGTTGATGA 58
Query 165 AGTGTCCTGTAGTTGTAGACAAGGCATGGCACAAGATAGC-AGCTTCGTCGTCTTCTTCT 223
|||||||||||||||||| |||| ||||| ||| ||| |||| | ||||||||||||
Sbjct 59 AGTGTCCTGTAGTTGTAGCCAAGACATGG---GAGA-AGCTAGCTCCTTCGTCTTCTTCT 114
Query 224 TTTGCTTCCTCGGATTCTCCTCCCGACATGGCAAAGATTGTTCGCGAAGTTGATCCTCTA 283
||| ||||||| ||| ||| ||| || |||||||| |||||| ||| ||||||||| ||
Sbjct 115 TTTTCTTCCTCTGATCCTCTTCCAAACTTGGCAAAGGTTGTTCTCGACGTTGATCCTTTA 174
Query 284 CGGGACGATTCTCCCCCCGAGTTCAAAATGTATATGGTTGGTGCTGAGTATGGGAACATG 343
||| ||||| | | || ||||| | ||| | ||||||| |||||||||||||||||||
Sbjct 175 CGGCCCGATTATTCGCCTGAGTTTACTATGCAAATGGTTGCTGCTGAGTATGGGAACATG 234
Query 344 CCAAAGTGCTACGCTTTGAACATGTTCACAGACTTTGTTCCGATGGGGGGCTTTTCCGAT 403
|||||||||||||||||||||||||||| ||||||||||||||||| || ||| |||||
Sbjct 235 CCAAAGTGCTACGCTTTGAACATGTTCAAAGACTTTGTTCCGATGGAGGCCTTCTCCGAA 294
Query 404 GTTAATCAAGGTTGTGCAGCTGCTGAAGGAAAGGTTGATCACAAATTCGATATGAAGCCA 463
|||| || || | |||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 295 ACCAATCTAGTTTATCCAGCTGTTGAAGGAAATGTTGATCACAAATTCGATATGAAGCCA 354
Query 464 TATGGTGA-AACCATTGAAGAATATGCTAGGCTTTGTCGTGAGAGAACGAGCAAAGCCAT 522
|||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CATGGCGAGAA-CATTGAAGAATATGCTAGGCTTTGTCGTGAGAGAACGAGCAAAGCCAT 413
Query 523 GGTTAAAAATCGACAGATTCAGGTTATTGATAATGACCGCGGAGTTCATATGAGGCCCAT 582
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 414 GGTTAAAAATCGACAGATTCAGGTTATTGATAATGACCGTGGAGTACATATGAGGCCCAT 473
Query 583 GCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAGGAAAAGAGGAAACCTCCCCCAGT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAGGAAAAGAGGAAACCTCCCCCAGT 533
Query 643 CAAGCAAACCGAGGTGAAGAGGACGAGGAGAGATCGTGGTGAGCTTGAAGCTATAATGTT 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CAAGCAAACCGAGGTGAAGAGGACGAGGAGAGATCGTGGTGAGCTTGAAGCTATAATGTT 593
Query 703 CAAGCTATTTGAAGGCCAGCCTAACTGGACATTGAAGCAGCTTGTACAAGAGACGGACCA 762
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 594 CAAGCTATTCGAAGGCCAACCTAACTGGACATTGAAGCAGCTTGTACAAGAGACGGACCA 653
Query 763 GCCAGCTCAGTTCCTGAAAGAAATACTAAACGAGCTGTGCGTGTACAATAAGAGAGGATC 822
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 654 GCCAGCTCAGTTCCTGAAAGAAATACTAAACGAGCTCTGCGTGTACAATAAGAGAGGATC 713
Query 823 GAACCAAGGGACATATGAGCTTAAACCTGAATACAAGAAATCTGCTGAAGATGATACAGG 882
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 714 AAACCAAGGGACATATGAGCTTAAACCTGAATACAAGAAATCTGCTGAAGATGATGCAGG 773
Query 883 TGGGCAGT 890
||||||||
Sbjct 774 TGGGCAGT 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639029522
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5