BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75520.1
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476700 jgi|Araly1|476700|fgenesh2_kg.2__1830__AT1G75520.1 2296 0.0
> Ahg476700 jgi|Araly1|476700|fgenesh2_kg.2__1830__AT1G75520.1
Length=1533
Score = 2296 bits (1243), Expect = 0.0
Identities = 1453/1550 (94%), Gaps = 31/1550 (2%)
Strand=Plus/Plus
Query 1 AACTGTAGTGAAGTGCCCAAAGCAAAAGATCTTCATGGGACTCTCTATGTCTTAAAAA-C 59
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AACCGTAGTGAAGTGCCCAAAGCAAAAGATCTTCATGGGACTCTCTATGTCTTAAAAACC 60
Query 60 ttttt-t-tctctctctctctctctT-AATCCACCGAGTAAATCCAGCAAACTTCCACTT 116
||||| | | || ||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 61 TTTTTCTCTTTCCCTCTCTCTCTCTTAAATCCACAGAGTAAATCCAGCAAACTTCCACTT 120
Query 117 TCAGAGATCAAACTTGAGTTATCTTAAGTGATGAAGAAAGACTAATTCCATGGCGGCGTT 176
|||||||||||| ||| |||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct 121 TCAGAGATCAAAATTGTGTTA-CTTAAATGATGAAGAGAGACTAATTCCATGGCGGCGTT 179
Query 177 TGCAGTTTCTTAAGCTTCCTCATCATCTAC-CGTCAA--TC-T-TTATAGCAAAGAAAAG 231
||||||||||||||||||| |||||||||| | |||| || | |||||| |||||||||
Sbjct 180 TGCAGTTTCTTAAGCTTCCGCATCATCTACTC-TCAATTTCTTATTATAGAAAAGAAAAG 238
Query 232 GAAATCAAATCAAGATTTACCCTTTTCTTTGATTTCTCTTTGTGGTGTGTTGGGTGTGTG 291
| |||||||||||||||| |||||||||||||| ||||||||| |||||||| |||||||
Sbjct 239 GGAATCAAATCAAGATTTTCCCTTTTCTTTGATATCTCTTTGTAGTGTGTTGTGTGTGTG 298
Query 292 ATGTTGATTACCACTGGGGAAAGAAATGGCAGGGTTCTTCTATCTAGGAGGGAGAGacaa 351
|||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 299 ATGTTGATTATCACTGGGGAAAGAAATGGCAGGGTTCTTCTATCTAGG-GGG-GAG---- 352
Query 352 caacagcaacaacaacaagcaagatcatcatcaagtagacaaggatcatcatcatcaaga 411
| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 353 --AGA-CAACAACAACAAGCAAAATCATCATCAAGTAGACAAGGATCATCATCATCAAGA 409
Query 412 caagagcaaTTATCTTTATCTTTACAAAGACGAGATCTATAATAACAACAAGGGTTTCGA 471
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 410 CAATAGCAATTATCTTTATCTTTACAAAGATGAGATCTATAACAACAACAAGGGTTTCGA 469
Query 472 GATTTGGCCTCCGCAATACTTCcaacaacaagaacatcaacaacaac-a-a-caacagca 528
|||||||||||| |||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 470 GATTTGGCCTCCACAATACTTCCAACAACAAGAACATCAACAACAACAACACCAACAGCG 529
Query 529 acaacaTGCCTCAGCTCCTGCAAACTTCTACTCATTTGGAATGGTTCCTAGCGGAAGCAG 588
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 530 ACAACATGCCTCAGCTCCTGCAAACTTCTACTCATTTGGAATGGTTCCAAGCGGAAGCAG 589
Query 589 CAGCAACAACAACAATAACCGTAGCCGGAGTTTATACTTCAACGTAGTCTCCGATCATGA 648
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 590 CAGCAACAACAACAATAACCGGAGCAGGAGTTTATACTTCAACGTAGTCTCCGATCATGA 649
Query 649 GCCGGGAGGGTTCACGGTGACGAGACAAGGAGGTATGAATTGTCAAGATTGTGGAAATCA 708
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 650 GCCGGGAGGGTTCACGGTGACGAGACAAGGAGGTATGAATTGTCAAGATTGTGGGAATCA 709
Query 709 AGCTAAGAAAGATTGTCCTCATATGAGATGTAGAACTTGTTGTAAAAGCCGAGGCTTTCA 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AGCTAAGAAAGATTGTCCTCATATGAGATGTAGAACTTGTTGTAAAAGCCGAGGCTTTCA 769
Query 769 TTGTCAAACTCACGTTAAGAGCACTTGGGTTCCTGCTGCTAAACGTCGTGAGCGTTTAGC 828
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 770 TTGTCAAACTCACGTTAAGAGCACTTGGGTTCCTGCTGCTAAACGCCGTGAGCGTCTAGC 829
Query 829 CCAACTCGCTTCCTTGCAGCACCACTCAGCCTCCAGCCGTGAAACGCAAAACGCCAAACG 888
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 830 CCAACTCGCTTCCTTGCAGCACCACTCAGCCTCTAGCCGTGAAACGCAAAACGCAAAACG 889
Query 889 CCTTCGAGAAGCTAGTGGTGGTGATAATAATGATGATAAAGACCATAGTGGTGGTGGTGG 948
|||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 890 CCTTCGTGAAGCTAGTGGTGGTAATAATGATGATGATAAAGACCATAGTGGTGGTGCTGG 949
Query 949 ATCGGCTCTTGCTAATACCCGTGTGGTGAATGCTAATTCTAATTCAGGGTTGGAGGTGAG 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 ATCGGCTCTTGCTAATACCCGTGTGGTGAATGCTAATTCTAATTCAGGGTTGGAGGTGAG 1009
Query 1009 TCAACACTTACCACCGGAGGTTAACTCACCGGCGATATTCCGGTGCGTTAGAGTGAGCTC 1068
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1010 TCAACACTTACCACCGGAGGTTAACTCACCGGCGGTATTCCGGTGCGTTAAAGTGAGCTC 1069
Query 1069 AATAGAAGAGGATGAAGATGATCAAGCATATGCTTACCAAACGGCTGTGAACATTGGAGG 1128
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1070 AATAGAAGAGGATGAAGATGATCAAGAATATGCTTACCAAACGGCTGTGAACATTGGAGG 1129
Query 1129 CCATATCTTCAAAGGCATTCTCTATGACCAAGGACCAGAACATCAAGATAATCATCACCT 1188
||| |||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 1130 ACATGTCTTCAAAGGCATTCTCTATGACCAAGGACCAGATCAAGATCATAATCATCACCT 1189
Query 1189 TAACCTACTTGCTTCCACTGCAACCACCACCAATGTGGAGGAGACCGCCACTAAGACTGT 1248
|||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1190 TAACCTCCTTGCCTCCACTGCAACCACCACCAATGTGGAGGAGACTGCCACGAAGACGGT 1249
Query 1249 CACCGGTAACAATAATAATGGATTAATGCTTGATCCTTCTTCGCTTTACCCAGCTCAACT 1308
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1250 CACCGGTAACAATAATAATGGATTAATGCTTGATCCTTCGTCGCTTTACCCGGCTCAACT 1309
Query 1309 CAACTCCTTCATCGCGGGTACGCCATTCTTCACACCTCCGAGGTCTTGATCAGATTCTGA 1368
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1310 CAACTCCTTCATCGCCGGTACGCCATTCTTCACACCTCCGAGGTCTTGA---GATTCAGA 1366
Query 1369 TATCAGTTATTGATTATTGTTAATCTTTAAACGTTATAATAATAAGAGGAtttc-ttttg 1427
||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 1367 TATCAGTTATTGATTAT-GTTAATCTTTAAACGTTATAATAATGAGAGGCTTTCATTTTG 1425
Query 1428 tttttgtttttgttttcgt-ttatctatttttgAAACTTCGTGCAATTTGGAAAAAACAC 1486
|| |||||||||| ||||| || | | ||||||| | ||||||||||||| | |||||||
Sbjct 1426 TTGTTGTTTTTGTATTCGTCTT-TGTGTTTTTGACATTTCGTGCAATTTG-ATAAAACAC 1483
Query 1487 CCTTACCTAGGTTGTTACTTAGTGGTGATTAACATGCATATTGTACGTAC 1536
||||| ||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1484 CCTTAGCTAGGTTGTTACTTAGTGGTGATAAACATGCATCTTGTACGTAC 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58963699260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5