BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G75550.1

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476702 jgi|Araly1|476702|fgenesh2_kg.2__1832__AT1G75550.1         771    0.0  


> Ahg476702 jgi|Araly1|476702|fgenesh2_kg.2__1832__AT1G75550.1
Length=504

 Score =  771 bits (417),  Expect = 0.0
 Identities = 475/504 (94%), Gaps = 0/504 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGACAATTTCTTCATTGGTCGTTATCTTCCTCCTCATACTGATCTTTCAAACTAAC  60
            |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  1    ATGAAGACAACTTCTTCATTGGTCGTTATCTTCCTCCTCATACTGATCTTGCAAACTAAC  60

Query  61   AAACTAGTGAGTGGGCATGACCGTTCCAATGATCAAGACACGGTCAAGAACAACAACAAT  120
            |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct  61   AAACTAGTGAGTGGGCATGACCGTTCCACTGATCAAGACACGGTCAAGAACAATAACAAT  120

Query  121  GATGAAAACAGCACAACTACGGGAGTAGTTGTCAGGGACAAGAAAAGAAGTTATAATGGA  180
            |||||||||| |||||| || | ||||||| ||| |||||||||||||||||||| ||||
Sbjct  121  GATGAAAACAACACAACCACTGAAGTAGTTTTCAAGGACAAGAAAAGAAGTTATAGTGGA  180

Query  181  GGAAGCGGAAGTTATAGAtggggatggggtggaggcggcggaggaggaggcgggggtgga  240
            ||||||||||| || |||||||||||||||||||| || |||||||||||||| ||||| 
Sbjct  181  GGAAGCGGAAGCTACAGATGGGGATGGGGTGGAGGAGGAGGAGGAGGAGGCGGTGGTGGT  240

Query  241  ggaggaggaggtggcggtggcggtggaggaggaggatggggatggggaggaggaggaggt  300
            ||| ||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  241  GGAAGAGGAGGAGGTGGTGGTGGTGGTGGAGGAGGATGGGGATGGGGAGGAGGAGGAGGT  300

Query  301  ggtggaggatggTACAAATGGGGTTGTGGCGGCggaggaaaaggaaaagggagagaagga  360
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  301  GGTGGAGGATGGTACAAATGGGGTTGTGGCGGCGGAGGAAAAGGAAAAGGAAGAGAAGGA  360

Query  361  agaggagagtttgtgaaaagagaaTATGCAGAGTGCAAAGGAAGAGGAAAATGTTCAGGA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct  361  AGAGGAGAGTTTGTGAAAAGAGAATATGCAGAGTGCAAAGGAAGAGGAAAATGTAGAGGA  420

Query  421  AAGAGATTGGAATGTCCTCAACACTGTGGAGGTTTGTGTTTCTACGATTGTCTGTTTCTC  480
            ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct  421  AAGAGATTGGAATGTCCTCAACATTGTGGAGGTTTTTGTTTTTACGATTGTCTCTTTCTC  480

Query  481  TGCAAACCTCATTGCCGTCGCTAG  504
            ||||||||||||||||||||||||
Sbjct  481  TGCAAACCTCATTGCCGTCGCTAG  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18314682720


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5