BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75580.1
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476705 jgi|Araly1|476705|fgenesh2_kg.2__1835__AT1G75580.1 835 0.0
Ahg943849 jgi|Araly1|943849|scaffold_700078.1 130 1e-29
> Ahg476705 jgi|Araly1|476705|fgenesh2_kg.2__1835__AT1G75580.1
Length=662
Score = 835 bits (452), Expect = 0.0
Identities = 488/505 (97%), Gaps = 4/505 (1%)
Strand=Plus/Plus
Query 1 CTCTAATTCACACTCACCCTTCATTGTGAAAACTCAAACCACACACAAGACAAATCCTTT 60
||||||||||| |||||| ||||||||||||||||||||||||||||| | |||||| ||
Sbjct 1 CTCTAATTCACGCTCACCTTTCATTGTGAAAACTCAAACCACACACAACAAAAATCC-TT 59
Query 61 TTGAAGAGAATGGCGATGAAAAAAGCAAACAAGCTAACGCAAACGGCGATGATCAAGCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTGAAGAGAATGGCGATGAAAAAAGCAAACAAGCTAACGCAAACGGCGATGATCAAGCAA 119
Query 121 ATCTTGAAGAGGTGCTCGAGCTTGGGAAAGAAACAGAGTAATGTGTACGGTGAAGACGAA 180
||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 120 ATCTTGAAGAGATGCTCGAGCTTGGGAAAGAAACAGAGTAATGTATACAGTGAAGACGAA 179
Query 181 AACGGATCTCCTCTTAACGTACCAAAAGGTCACTTCGTCGTCTACGTCGGAGAGAATCGG 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 AACGGATCTCCTCTTAACGTACCCAAAGGTCACTTCGTCGTCTACGTCGGAGAGAATCGG 239
Query 241 GTTAGGTACGTTGTGCCCATTTCGTTTTTGACCCGACCTGAGTTTCAGCTTCTTCTCCAA 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTCAGGTACGTTGTGCCCATTTCGTTTTTGACCCGACCTGAGTTTCAGCTTCTTCTCCAA 299
Query 301 CAAGCCGAGGAAGAGTTTGGCTTTGATCATGACATGGGTCTCACTATCCCTTGTGAAGAA 360
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAAGCTGAGGAAGAATTTGGCTTTGATCATGACATGGGTCTCACTATCCCTTGTGAAGAA 359
Query 361 GTCGTTTTCCGATCTCTCACCTCCATGCTCCGATGAACATATCTTTT-AGGGTTTTAAAA 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 GTCGTTTTCCGATCTCTCACCTCCATGCTCCGATGAACATATCTTTTTAGGGTTTTAAAA 419
Query 420 T-TTTCTAGTTATATATTTTGGAGACTTGAGATGTTTTAGGGGAACAGAGGAAGCTGCTG 478
| ||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 420 TATTT-TAGTTATATATTTTGGAGACATGAGATGTTTTAGGAGAACAGAGGAAGCTGCTG 478
Query 479 AGTAAATGCTTCTCTGTTTTAGCAA 503
|||||||||||||||||||||||||
Sbjct 479 AGTAAATGCTTCTCTGTTTTAGCAA 503
Score = 222 bits (120), Expect = 2e-57
Identities = 155/170 (91%), Gaps = 10/170 (6%)
Strand=Plus/Plus
Query 540 ATATGGGTTTAGTAGATGTATTAGAGTGAGACTAACCCTTAATTAGAGAAAACCTAGATG 599
||||||||||||||| |||||||||||||||||||||||| | ||| |||||||| |||
Sbjct 503 ATATGGGTTTAGTAGTTGTATTAGAGTGAGACTAACCCTT-A-GAGA-AAAACCTAAATG 559
Query 600 AGAATGATTACTATTTTTGGTCATCTTCTCAGATTTACTCTCATGGTGGTGTGTGGTTGT 659
||||||||||||||||||||| |||||||||||||||| |||||||| | |||| | |
Sbjct 560 AGAATGATTACTATTTTTGGTTATCTTCTCAGATTTACCCTCATGGT-G-GTGT-G--G- 613
Query 660 TCAATGTGTACCCTGTGAGAGACTTTTTAATATTTGATGAATGAGACTTT 709
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 T-AATGTGTACCCTGTGAGAGACTTTTTAATATTTGATGAATGAGACTTT 662
> Ahg943849 jgi|Araly1|943849|scaffold_700078.1
Length=358
Score = 130 bits (70), Expect = 1e-29
Identities = 237/314 (75%), Gaps = 25/314 (8%)
Strand=Plus/Plus
Query 91 AAGCTAACGCAAACGGCGATGATCAAGCAAATCTTGAAGAGGTGCTCGAGCTTGGGAAAG 150
|||||||| ||||| || ||| | ||||||||| | ||||| ||||||||||| || |||
Sbjct 42 AAGCTAACACAAACAGCAATGCTAAAGCAAATCCTCAAGAGATGCTCGAGCTTAGGCAAG 101
Query 151 AAACAGAGTAATGTGTACGGTGAAGACGAAAACGGATCT-CCTCTTAACGTACCAAAAGG 209
|||| |||| ||| || || | || || ||| |||||| |||||||||| ||
Sbjct 102 AAAC-----AATG-CTAC---GACGA-G-GAA-GG-TCTCCCTCTTGACGTACCAAAGGG 148
Query 210 TCACTTCGT-C-GTCTACGTCGGAGAGAATCGGGTTAGGTACGTTGTGCCCATTTCGTTT 267
|| || | | || ||||| || || || || |||||| | || || ||||| ||
Sbjct 149 ACA-TT-TTCCGGTTTACGTAGGCGAAAAGCGAACGAGGTACATCGTACCAATTTCCTTC 206
Query 268 TTGACCCGA-CCTGAGTTTCAGCTTCTTCTCCAACAAGCCGAGGAAGAGTTTGGCTTT-G 325
||||| | | || || || | | | ||||| |||||||| ||||||||||| |||||| |
Sbjct 207 TTGACTC-ATCCAGAATTCCTGATCCTTCTTCAACAAGCAGAGGAAGAGTTCGGCTTTCG 265
Query 326 ATCATGACAT--G-GGTCTCACTATCCCTTGTGAAGAAGTCGTTTTCCGATCTCTCACCT 382
|| ||||| | || ||||||||||||||||||||||||||||| | ||||| || |
Sbjct 266 -CCACGACATGGGAGGACTCACTATCCCTTGTGAAGAAGTCGTTTTTCTCTCTCTAACAT 324
Query 383 CCATGCTCCGATGA 396
||||| || |||||
Sbjct 325 CCATGATCAGATGA 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26419181481
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5