BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75590.1
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926945 jgi|Araly1|926945|scaffold_202506.1 797 0.0
Ahg920937 jgi|Araly1|920937|scaffold_102218.1 412 2e-114
Ahg940569 jgi|Araly1|940569|scaffold_601113.1 377 6e-104
> Ahg926945 jgi|Araly1|926945|scaffold_202506.1
Length=506
Score = 797 bits (431), Expect = 0.0
Identities = 482/507 (95%), Gaps = 2/507 (0%)
Strand=Plus/Plus
Query 35 AAATCACTAAACCGGAAAAAATGGCTGGAGGTCTCGGGAAATGCAGCAAGATCCGTCACA 94
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AAATCACTAAACCGGAAAAAATGGCTGGAGGTCTCGGAAAATGCAGCAAGATCCGTCACA 60
Query 95 TTGTGAGGCTAAGGCAAATGCTTCGACGGTGGCGCGATCAAGCGAGGATGTCTTCTTCTT 154
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGTGAGGCTGAGACAGATGCTTCGACGGTGGCGCGATCAAGCGAGGATGTCTTCTTCTT 120
Query 155 TCAGCCGTTGTGTACCGTCGGATGTACCGTCAGGACACGTGGCGGTCTACGTAGGAAGCA 214
|||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 121 TCAGCCGTCGTGTACCGTCGGATGTGCCGTCAGGACACGTGGCGATCTACGTAGGAAGCA 180
Query 215 GTTGTAGGAGATTTGTGGTGCGCGCGACGTATCTGAACCATCCTGTCCTAAGGAACCTTC 274
|||| |||||||||||||||||||||||||||||||||||||| ||||| |||| | |
Sbjct 181 GTTGCAGGAGATTTGTGGTGCGCGCGACGTATCTGAACCATCCAATCCTACGGAATC-TG 239
Query 275 TT-GTTCAAGCTGAGGAAGAGTTTGGTTTCGTTAACCAAGGTCCGTTGGTTATCCCTTGT 333
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGGTTCAAGCTGAGGAAGAGTTCGGTTTCGTTAACCAAGGTCCGTTGGTTATCCCTTGT 299
Query 334 GAAGAATCGGTTTTCGAGGAATCGATTCGGTTTATATCCCGGTCTGATTCGACCCGGTCA 393
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 300 GAAGAATCGGTTTTCGAGGAATCGATTCGGTTTATCTCCCGGTCTGATTCGACTCGGTCA 359
Query 394 AGACGGTTTACTTGTCCCGATGATTTTCAGAAGAATTGCCACGTGGTGGGAATCAGAAGC 453
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 360 AGACGGTTTACTTGTCCCGATGATTTTCAGAAGAACCGCCAGGTGGTGGGAATCAGAAGC 419
Query 454 AAGCTTGATCTATGGATCGAATCTCGACCGTTACTTCACGGCGTTACTGAAAAAGCCGTT 513
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 AAGATAGATCTATGGATCGAATCTCGACCGTTACTTCACGGCGTCACTGAAAAAGCCGTC 479
Query 514 TGGTGATGTCACTTGACGGCGTTCGTA 540
|||||||||||||||||||||||||||
Sbjct 480 TGGTGATGTCACTTGACGGCGTTCGTA 506
> Ahg920937 jgi|Araly1|920937|scaffold_102218.1
Length=506
Score = 412 bits (223), Expect = 2e-114
Identities = 394/476 (83%), Gaps = 13/476 (3%)
Strand=Plus/Plus
Query 50 AAAAAATGGCTGGAGGTCTCGGGAAATGCAGCAAGATCCGTCACATTGTGAGGCTAAGGC 109
|||||||||| ||| |||| | ||||||||||||||||||||||||||||| || || |
Sbjct 17 AAAAAATGGCCGGAAGTCTTGTAAAATGCAGCAAGATCCGTCACATTGTGAGACTCAGAC 76
Query 110 AAATGCTTCGACGGTGGCGCGATC-AAGCGAGGATGTCTTCTTCTTTCAGCCGTTGTGTA 168
||||||| || || ||||| | | |||| || | | ||||| ||||||| ||||||
Sbjct 77 AAATGCTCCGGCGATGGCG-TAACAAAGCTCGG-T-T-ATCTTCGGTCAGCCGCTGTGTA 132
Query 169 CCGTCGGATGTACCGTCAGGACACGTGGCGGTCTACGTAGGAAGCAGTTGTAGGAGATTT 228
||||||||||| || || ||||||||||| |||| || || ||| |||| |||||||||
Sbjct 133 CCGTCGGATGTTCCATCTGGACACGTGGCAGTCTGTGTGGGCAGCGGTTGCAGGAGATTT 192
Query 229 GTGGTGCGCGCGACGTATCTGAACCATCCTG-TCCTAAGGAACCTTCTTGTTCAAGCTGA 287
|||||||| ||| |||| ||||||||||| | || |||| || ||||| |||||||||||
Sbjct 193 GTGGTGCGTGCGTCGTACCTGAACCATCC-GATCATAAGCAATCTTCTGGTTCAAGCTGA 251
Query 288 GGAAGAGTTTGGTTTCGTTAACCAAGGTCCGTTGGTTATCCCTTGTGAAGAATCGGTTTT 347
|||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 252 AGAAGAGTTCGGTTTCGCTAACCAAGGACCGTTGGTTATTCCTTGTGAAGAATCGGTTTT 311
Query 348 CGAGGAATCGATTCGGTTTATATCCCGGTCTGATTCGACCCGGTCAAGACGGTTTACTTG 407
||| ||| ||||||||||||| || |||||||||||| | |||||||| |||||||||||
Sbjct 312 CGAAGAAGCGATTCGGTTTATTTCTCGGTCTGATTCGTCTCGGTCAAGCCGGTTTACTTG 371
Query 408 TCCCGATGATTTTCAGAAGAATTGCCACGT-GG--TGGGAATCAGAAGCAAGCTTGATCT 464
||| |||||| ||||||| | | | ||| || | ||||| ||||||||| |||||
Sbjct 372 TCCTGATGATCTTCAGAA-A-T-GTAACGGAGGAATCAAAATCAAAAGCAAGCTAGATCT 428
Query 465 ATGGATCGAATCTCGACCGTTACTTCACGGCGTTACTGAAAAAGCCGTTTGGTGAT 520
| ||| |||||||| ||||| ||||||||||| | || |||||| | |||||||
Sbjct 429 GTTGATTGAATCTCGGCCGTTGCTTCACGGCGTCGCCGAGAAAGCCATCTGGTGAT 484
> Ahg940569 jgi|Araly1|940569|scaffold_601113.1
Length=487
Score = 377 bits (204), Expect = 6e-104
Identities = 377/456 (83%), Gaps = 30/456 (7%)
Strand=Plus/Plus
Query 47 CGG-AAAAAATGGCTGGAGGTCTCGGGAAATGCAGCAAGATCCGTCACATTGTGAGGCTA 105
||| ||||||||||||||||| |||| ||||| ||||||||||| |||||||||| |||
Sbjct 12 CGGAAAAAAATGGCTGGAGGTATCGGAAAATGTAGCAAGATCCGGCACATTGTGAAGCTG 71
Query 106 AGGCAAATGCTTCGACGGTGGCGCGATCAA-GCGAGGATGTCTTCTTCTTTCAGCCGTTG 164
||||||||||| || | ||||| || ||| ||| ||||| |||||| |||| || |
Sbjct 72 AGGCAAATGCTCCGGCAATGGCG-GAACAAGGCGCGGATG---TCTTCTGTCAGACGATC 127
Query 165 TGTACCGTCGGATGTACCGTCAGGACACGTGGCGGTCTACGTAGGAAGCAGTTGTAGGAG 224
||| ||||||||||| |||||||||||||||||||||||||| || |||||||| |||||
Sbjct 128 TGTGCCGTCGGATGTGCCGTCAGGACACGTGGCGGTCTACGTTGGGAGCAGTTGCAGGAG 187
Query 225 ATTTGTGGTGCGCGCGACGTATCTGAACCATCCTGTCCTAAGGAACCTTCTTG-TTCAAG 283
||||||||||||||||||||||||||||||||| |||| | ||| || |||| || |||
Sbjct 188 ATTTGTGGTGCGCGCGACGTATCTGAACCATCCAATCCTGATGAATCT-CTTGGTT-AAG 245
Query 284 -CTGAGGAAGAGTTTGGTTTCGTTAACCAAGGTCCGTTGGTTATCCCTTGTGAAGAATCG 342
|||| || ||||| ||||| |||||| || |||||||||||||| ||||||||||||
Sbjct 246 GCTGAAGAGGAGTTCGGTTTTACTAACCAGGGACCGTTGGTTATCCCATGTGAAGAATCG 305
Query 343 GTTTTCGAGGAATCGATTCGGTTTATATCCCGGTCTGATTCGACCCGGTCAAGACGGTTT 402
||||| ||||||||||||||||||||| | ||||| | | | || | | |||
Sbjct 306 GTTTTTGAGGAATCGATTCGGTTTATAACTCGGTC--A----A---G-TC--G--G-TTT 350
Query 403 ACTTGTCCCGATGATTTTCAGAAGAATTGCCACG-TGGTGGGAATCAGAAGCAAGCTTGA 461
|||||| |||||||||| ||||||||||||||| |||| | | | ||||||||| ||
Sbjct 351 ACTTGTACCGATGATTTAAAGAAGAATTGCCACGATGGT---ATT-ATAAGCAAGCTGGA 406
Query 462 TCTATGGATCGAATCTCGACCGTTACTTCACGGCGT 497
||| | ||| |||||||| ||||| |||||||||||
Sbjct 407 TCTTTTGATGGAATCTCGGCCGTTGCTTCACGGCGT 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32328233616
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5