BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75600.1
Length=531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489722 jgi|Araly1|489722|fgenesh2_kg.6__2856__AT1G13370.1 676 0.0
Ahg480202 jgi|Araly1|480202|fgenesh2_kg.3__2903__AT1G13370.1 625 1e-178
Ahg316489 jgi|Araly1|316489|fgenesh1_pm.C_scaffold_2001522 573 4e-163
Ahg487928 jgi|Araly1|487928|fgenesh2_kg.6__1062__AT5G10980.1 466 7e-131
Ahg472214 jgi|Araly1|472214|fgenesh2_kg.1__2168__AT1G19890.1 335 2e-91
> Ahg489722 jgi|Araly1|489722|fgenesh2_kg.6__2856__AT1G13370.1
Length=533
Score = 676 bits (366), Expect = 0.0
Identities = 417/442 (94%), Gaps = 2/442 (0%)
Strand=Plus/Plus
Query 60 TTCTAAGCTCTCAAG-TTCTTGACGAAGCAATGGCTCGTACGAAGCAAACTGCAAGAAAA 118
||||||||| || || ||||||| ||||| |||||||||||||||||||| || ||||||
Sbjct 1 TTCTAAGCTATC-AGATTCTTGAAGAAGCCATGGCTCGTACGAAGCAAACCGCGAGAAAA 59
Query 119 TCACACGGAGGAAAAGCTCCGAGGACTCTGCTCGCTACCAAGGCGGCGAGGAAATCTGCG 178
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 60 TCACACGGAGGAAAAGCTCCGAGGAAGCAGCTCGCTACCAAGGCGGCGAGGAAATCTGCG 119
Query 179 CCGACTACTGGAGGAGTCAAGAAACCTCACCGTTACCGTCCCGGAACCGTCGCTCTTCGT 238
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 CCGACTACCGGAGGAGTCAAGAAACCTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGT 179
Query 239 GAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGTAAACTTCCTTTTCAACGT 298
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 180 GAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGCAAACTTCCATTTCAGCGT 239
Query 299 CTTGTTCGTGAAATCGCTCAAGATTACAAGACGGATCTGAGATTCCAGAGCCATGCGGTG 358
|||||||||||||| || ||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 240 CTTGTTCGTGAAATAGCCCAAGATTTCAAGACGGATCTGAGATTTCAGAGCCATGCAGTG 299
Query 359 TTAGCTCTTCAAGAAGCTGCTGAAGCATATTTGGTTGGTTTGTTTGAAGATACAAATCTG 418
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 300 TTAGCTCTTCAAGAAGCTGCTGAAGCATATTTGGTGGGTTTGTTTGAAGACACAAATCTT 359
Query 419 TGTGCCATTCATGCCAAGAGGGTTACGATCATGCCTAAAGATGTTCAATTGGCAAGAAGG 478
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 TGTGCCATTCATGCAAAGAGGGTTACGATAATGCCTAAAGATGTTCAATTGGCAAGAAGG 419
Query 479 ATTCGTGGAGAGCGTGCTTAGA 500
||||||||||||||||||||||
Sbjct 420 ATTCGTGGAGAGCGTGCTTAGA 441
> Ahg480202 jgi|Araly1|480202|fgenesh2_kg.3__2903__AT1G13370.1
Length=501
Score = 625 bits (338), Expect = 1e-178
Identities = 396/425 (93%), Gaps = 0/425 (0%)
Strand=Plus/Plus
Query 75 TTCTTGACGAAGCAATGGCTCGTACGAAGCAAACTGCAAGAAAATCACACGGAGGAAAAG 134
||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1 TTCTTGAAGAAGCCATGGCTCGTACGAAGCAAACCGCGAGAAAATCACACGGAGGAAAAG 60
Query 135 CTCCGAGGACTCTGCTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGACTACTGGAGGAG 194
|||| |||| | || ||||| ||||| ||||||||||||||||||| ||| || ||||
Sbjct 61 CTCCAAGGAAGCAACTTGCTACTAAGGCTGCGAGGAAATCTGCGCCGAGTACCGGTGGAG 120
Query 195 TCAAGAAACCTCACCGTTACCGTCCCGGAACCGTCGCTCTTCGTGAGATTCGTAAATACC 254
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 TCAAGAAACCTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACC 180
Query 255 AGAAGAGCACAGAGTTGTTGATCCGTAAACTTCCTTTTCAACGTCTTGTTCGTGAAATCG 314
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 181 AGAAGAGCACAGAGTTGTTAATCCGTAAACTTCCATTTCAGCGTCTTGTTCGTGAAATCG 240
Query 315 CTCAAGATTACAAGACGGATCTGAGATTCCAGAGCCATGCGGTGTTAGCTCTTCAAGAAG 374
| ||||||| ||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 241 CCCAAGATTTCAAGACGGATCTGAGATTCCAGAGCCACGCAGTGTTAGCGCTTCAAGAAG 300
Query 375 CTGCTGAAGCATATTTGGTTGGTTTGTTTGAAGATACAAATCTGTGTGCCATTCATGCCA 434
|||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 301 CTGCGGAGGCATATTTGGTGGGTTTGTTTGAAGATACAAATCTGTGTGCCATTCATGCAA 360
Query 435 AGAGGGTTACGATCATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTG 494
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAGGGTTACGATAATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTG 420
Query 495 CTTAG 499
|||||
Sbjct 421 CTTAG 425
> Ahg316489 jgi|Araly1|316489|fgenesh1_pm.C_scaffold_2001522
Length=711
Score = 573 bits (310), Expect = 4e-163
Identities = 352/373 (94%), Gaps = 0/373 (0%)
Strand=Plus/Plus
Query 89 ATGGCTCGTACGAAGCAAACTGCAAGAAAATCACACGGAGGAAAAGCTCCGAGGACTCTG 148
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCTCGTACGAAGCAAACCGCGAGAAAATCACACGGAGGAAAAGCTCCGAGGAAGCTG 60
Query 149 CTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGACTACTGGAGGAGTCAAGAAACCTCAC 208
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 61 CTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGACTACAGGAGGAGTCAAGAAGCCTCAC 120
Query 209 CGTTACCGTCCCGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGAG 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTTACCGTCCCGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGAG 180
Query 269 TTGTTGATCCGTAAACTTCCTTTTCAACGTCTTGTTCGTGAAATCGCTCAAGATTACAAG 328
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct 181 TTGTTGATCCGTAAACTTCCCTTTCAACGTCTTGTTCGTGAAATCGCCCAAGATTTCAAG 240
Query 329 ACGGATCTGAGATTCCAGAGCCATGCGGTGTTAGCTCTTCAAGAAGCTGCTGAAGCATAT 388
||||||||||||||||| ||||| || || || || |||||||||||||| || ||||||
Sbjct 241 ACGGATCTGAGATTCCAAAGCCACGCTGTCTTGGCACTTCAAGAAGCTGCGGAGGCATAT 300
Query 389 TTGGTTGGTTTGTTTGAAGATACAAATCTGTGTGCCATTCATGCCAAGAGGGTTACGATC 448
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 301 TTGGTGGGTTTGTTTGAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGATT 360
Query 449 ATGCCTAAAGATG 461
|||||||||||||
Sbjct 361 ATGCCTAAAGATG 373
Score = 527 bits (285), Expect = 3e-149
Identities = 321/339 (95%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 161 GCGGCGAGGAAATCTGCGCCGACTACTGGAGGAGTCAAGAAACCTCACCGTTACCGTCCC 220
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 373 GCGGCGAGGAAATCTGCGCCGACTACCGGTGGAGTCAAGAAGCCTCACCGTTACCGTCCC 432
Query 221 GGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGT 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGT 492
Query 281 AAACTTCCTTTTCAACGTCTTGTTCGTGAAATCGCTCAAGATTACAAGACGGATCTGAGA 340
|||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 493 AAACTTCCCTTTCAACGTCTTGTTCGTGAAATCGCCCAAGATTTCAAGACGGATCTGAGA 552
Query 341 TTCCAGAGCCATGCGGTGTTAGCTCTTCAAGAAGCTGCTGAAGCATATTTGGTTGGTTTG 400
||||| ||||| || ||||| || |||||||||||||| || ||||||||||| ||||||
Sbjct 553 TTCCAAAGCCACGCTGTGTTGGCACTTCAAGAAGCTGCGGAGGCATATTTGGTGGGTTTG 612
Query 401 TTTGAAGATACAAATCTGTGTGCCATTCATGCCAAGAGGGTTACGATCATGCCTAAAGAT 460
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 613 TTTGAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGATTATGCCTAAAGAT 672
Query 461 GTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTTAG 499
||||||||||||||||| |||||||||||||||||||||
Sbjct 673 GTTCAATTGGCAAGAAGAATTCGTGGAGAGCGTGCTTAG 711
> Ahg487928 jgi|Araly1|487928|fgenesh2_kg.6__1062__AT5G10980.1
Length=653
Score = 466 bits (252), Expect = 7e-131
Identities = 372/429 (87%), Gaps = 11/429 (3%)
Strand=Plus/Plus
Query 76 TCT-TGACGAAG-CAATGGCTCGTACGAAGCAAACTGCAAGAAAAT-CACACGGAGGAAA 132
||| ||| |||| ||||||||||||| |||||||| || || |||| ||| |||||| ||
Sbjct 74 TCTCTGA-GAAGACAATGGCTCGTACCAAGCAAACCGCTAGGAAATCCAC-CGGAGGTAA 131
Query 133 AGCTCCGAGGACTCTGCTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGACTACTGGAGG 192
|||||| |||| | |||||| ||||||||||||||||||||||| ||||| || |||||
Sbjct 132 AGCTCCCAGGAAGCAGCTCGCCACCAAGGCGGCGAGGAAATCTGCACCGACCACCGGAGG 191
Query 193 AGTCAAGAAACCTCACCGTTACCGTCCCGGAACCGTCGCTCTTCGTGAGATTCGTAAATA 252
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 192 AGTCAAGAAGCCTCACCGTTACCGTCCCGGAACCGTGGCTCTTCGTGAGATTCGTAAATA 251
Query 253 CCAGAAGAGCACAGAGTTGTTGATCCGTAAACTTCCTTTTCAACGTCTTGTTCGTGAAAT 312
|||||||||||| || || |||||||| || ||||| || || ||||| |||||||||||
Sbjct 252 CCAGAAGAGCACTGAATTATTGATCCGCAAGCTTCCCTTCCAGCGTCTCGTTCGTGAAAT 311
Query 313 CGCTCAAGA-TTACAAGACGGATCTGAGATTCCAGAGCCATGCGGTGTTAGCTCTTCAAG 371
|||||| || || ||||||||||||||| || ||||| || |||||||||||||||||||
Sbjct 312 CGCTCAGGACTT-CAAGACGGATCTGAGGTTTCAGAGTCACGCGGTGTTAGCTCTTCAAG 370
Query 372 AAGCTGCTGAAGCATAT-TTGGTTGGTTTGTTT-GAAGATACAAATCTGTGTGCCATTCA 429
| || ||||| ||||| ||| |||| | ||| || ||||| ||||| || || |||||
Sbjct 371 AGGCGGCTGAGGCATACCTTG-TTGGACT-TTTCGAGGATACCAATCTCTGCGCTATTCA 428
Query 430 TGCCAAGAGGGTTACGATCATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGA 489
|||||||||||||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct 429 CGCCAAGAGGGTTACGATCATGCCTAAGGACATTCAATTGGCTAGAAGGATTCGTGGAGA 488
Query 490 GCGTGCTTA 498
||||||||
Sbjct 489 ACGTGCTTA 497
> Ahg472214 jgi|Araly1|472214|fgenesh2_kg.1__2168__AT1G19890.1
Length=580
Score = 335 bits (181), Expect = 2e-91
Identities = 340/417 (82%), Gaps = 10/417 (2%)
Strand=Plus/Plus
Query 89 ATGGCTCGTACGAAGCAAACTGCAAGAAAATCACAC-GGAGGAAAAGCTCCGAGGACTCT 147
||||||||||||||||||||||| || ||||| || || ||||||| ||| ||||
Sbjct 1 ATGGCTCGTACGAAGCAAACTGCGAGGAAATC-TACTGGTGGAAAAGGTCCAAGGAAAGA 59
Query 148 GCTCGCTACCAAGGCGGCGAGGAAATCTG--CGCCGA-C-TA-C-TGGAGGAGTCAAGAA 201
|||||||||||||||||||||||| ||| | || | || | || || |||||||
Sbjct 60 ACTCGCTACCAAGGCGGCGAGGAAAACTGTTAGAAGACCGTACCGCGGTGGTGTCAAGAG 119
Query 202 ACCTCACCGTTACCGTCCCGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAG 261
||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 120 GGCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATCCGCAAATACCAGAAGAG 179
Query 262 CACAGAGTTGTTGATCCGTAAACTT-CCTTTTCAACGTCTTGTTCGTGAAATCGCTCAAG 320
|| || ||| | ||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 180 TACCGACTTGCTAATCCGTAAA-TTGCCTTTCCAACGTCTTGTTCGTGAAATCGCTCAAG 238
Query 321 ATTACAAGACGGATCTGAGATTCCAGAGCCATGCGGTGTTAGCTCTTCAAGAAGCTGCTG 380
|| | ||| |||| | || ||||| ||||||||||| | || |||||||| || || |
Sbjct 239 ATCATAAGGTGGATTTAAGGTTCCAAAGCCATGCGGTACTCGCACTTCAAGAGGCAGCCG 298
Query 381 AAGCATATTTGGTTGGTTTGTTTGAAGATACAAATCTGTGTGCCATTCATGCCAAGAGGG 440
||||||| ||||| |||||||| ||||| || ||||||||||| || || ||||| ||||
Sbjct 299 AAGCATACTTGGTGGGTTTGTTCGAAGACACGAATCTGTGTGCGATCCACGCCAAAAGGG 358
Query 441 TTACGATCATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTT 497
||||||||||||| | || |||| ||||| ||| | || ||||| || |||||||
Sbjct 359 TTACGATCATGCCCAGGGACATTCAGTTGGCCAGACGCATCCGTGGGGAACGTGCTT 415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19344883623
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5