BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75620.1
Length=1818
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926948 jgi|Araly1|926948|scaffold_202509.1 2436 0.0
> Ahg926948 jgi|Araly1|926948|scaffold_202509.1
Length=1688
Score = 2436 bits (1319), Expect = 0.0
Identities = 1557/1672 (93%), Gaps = 15/1672 (1%)
Strand=Plus/Plus
Query 1 AAATGGCTGCAAAAGCCACAACCCAAATCGTCTCCGACGTCAATCATCTCCGATACTTCG 60
|||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 23 AAATGGCTGCTAAAGCCACAATCCAAATCTTCTCCGACGTCAATCATCTCCGATACTTCG 82
Query 61 CTGTCTTCTTTCTCCTCTCGTGCCACGTGGCATCCGGCGACGAAGGAACATGGGAGCTTC 120
|| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 83 CTCTCTTCTTTCTCCTATCGTGCCACGTGGCATCCGGCGAAGAAGGAACATGGGAACTTC 142
Query 121 TCTTACCAAACGTCGGAATCTCAGCAATGCACTCTCAGCTCCTCCACAACGACCGTGTCA 180
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 143 TTTTACCAAACGTCGGGATCTCAGCAATGCACTCTCAGCTCCTTCACAACGACCGTGTCA 202
Query 181 TAATGTACGACCGAACCAACTTCGGTCCTTCCAACATCTCTCTCCCTAACGGAGCCTGCC 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 203 TAATGTACGACCGAACCAACTTCGGTCCTTCCAACATCTCTCTCCCCAACGGAGCCTGCC 262
Query 241 GCAGTAGCCCAGGTGACGCGGTCTCGAAAACCGACTGCACCGCTCACTCGGTCGAATACG 300
|||| ||||| |||||||| |||||||| | ||||||||| |||||||||||||||||||
Sbjct 263 GCAGCAGCCCGGGTGACGCAGTCTCGAATATCGACTGCACGGCTCACTCGGTCGAATACG 322
Query 301 ACGTAGCTTTGAACCGTATCCGTCCCTTAACGGTCCAATCCAACACTTGGTGCTCCTCAG 360
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 323 ACGTCGCTTTGAACCGTATCCGTCCCTTAACAGTCCAATCCAACACTTGGTGCTCCTCAG 382
Query 361 GAGGAGTCACTCCCGACGGAACTCTTCTACAAACAGGAGGTGATTTAGACGGAGAACGTA 420
| ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||
Sbjct 383 GCGGAGTCACTCCCGACGGAACTCTTCAACAAACGGGAGGTGATAGAGACGGAGAACGTA 442
Query 421 AAGTTAGACTTATGGATCCTTGCGACGACAAT-TCTTGTGACTGGATAGAAGTCGATAAC 479
||||||||||| | | |||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 443 AAGTTAGACTTTTCGCTCCTTGCGACGACAATAT-TTGTGACTGGACAGAAGTCGATAAC 501
Query 480 GGACTCGCTGCAAGAAGATGGTACGCTACGAACCATATCCTCCCCGACGGTCGTCAGATC 539
||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 502 GGACTCGCTGCAAGAAGATGGTACGCTACAAACCATGTCCTCCCCGACGGTCGGCAGATC 561
Query 540 ATAATCGGTGGTCGAGGTCAATTCAA-TTACGAGTTTTTCCCCAAAACAAACGCTCCAAA 598
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 562 ATAATCGGAGGTCGAGGTCAATTCAACTT-CGAGTTTTTCCCCAAAACAAACGCTCCAAA 620
Query 599 TTTCTACAGTATCCCGTTTTTGTCCGAAACCAATGATCCTGGAGACGAAAACAATCTTTA 658
| ||||| | | |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 621 TCTCTACTCTTTACCGTTTTTGTCCGAAACCAACGATCCT---GACGAAAACAATCTTTA 677
Query 659 CCCTTTCGTTTTCCTCAACACCGATGGTAACTTGTTCATTTTCGCTAACAACAGAGCGAT 718
||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 678 CCCTTACGTTTTCCTAAACACCGATGGAAACTTGTTCATATTCGCTAACAACAGAGCGAT 737
Query 719 ATTGCTCGATTATTCCACAAACACTGTCGTCAGAACTTATCCGGAGATCCCTGGAGGTGA 778
|||||| |||||||||| |||||||||||||| ||| ||||| |||||||||||||||||
Sbjct 738 ATTGCTAGATTATTCCAGAAACACTGTCGTCAAAACGTATCCCGAGATCCCTGGAGGTGA 797
Query 779 TCCAAGAAGCTATCCAAGCACTGGCTCCGCTGTTCTTTTACCGATCAAGAACCTTGTGTT 838
||||||||| ||||| |||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 798 TCCAAGAAGTTATCCGAGCACTGGCTCCGCCGTTCTTTTGCCGATAAAGAACCTTGTGTT 857
Query 839 AGAGGTTCTTGTGTGCGGAGGTGCACCGAAAGGATCGTACAACCTCTCT---TGGAGAAA 895
||||||||| ||||| ||||||||||| |||||||||||| |||||||| |||||||
Sbjct 858 AGAGGTTCTAGTGTGTGGAGGTGCACCAAAAGGATCGTACGACCTCTCTCAAAGGAGAAA 917
Query 896 CACTTTTGTCAAGGCTCTTGACACGTGTGCGAGAATCAATATCAACGACGTGAATCCTCA 955
|||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 918 TACTTTTGTGAAAGCTCTTGACACATGTGCAAGAATCAATATCAACGACGTGAATCCTCA 977
Query 956 ATGGATCGTTGAAAAGATGCCGAGAGCGAGAGTTATGGGAGACATGATGCTTTTACCTGA 1015
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 978 ATGGATCGTTGAGAAGATGCCGAGAGCGAGAGTTATGGGAGACATGATGCTTCTACCTGA 1037
Query 1016 CGGAAATGTTCTGTTAATTAACGGTGGTTCTTCAGGGACAGCTGCTTGGGAGCTTGGTCG 1075
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1038 CGGAAATGTTCTGTTAATTAACGGTGGTGGTTCAGGGACAGCTGCTTGGGAGCTTGGTCG 1097
Query 1076 TGAACCGG-TTTTACATCCTGATCTTTACCATCCCGATAAACCGGTCGGTTCAAGATTTG 1134
|||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||| |
Sbjct 1098 TGAACCGGTTTTTA-ATCCTGATATTTACCATCCCGATAAACCGGTCGGTTTAAGATTCG 1156
Query 1135 AAGTTCAAAACCCAAGCACTATCCCTCGAATGTACCATTCTATCGCGACTTTGCTTCGTG 1194
||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1157 AAGCTCAAAACCCAAGCAAGATCCCTCGAATGTACCATTCTACCGCGACTTTGCTTCGTG 1216
Query 1195 ACGGGAGAATTCTCGTTGGAGGAAGCAACCCTCACGCGTTTTACAATTTCACCGGCGTGC 1254
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1217 ACGGGAGAGTTCTTGTTGGAGGAAGCAACCCTCACGCGTTTTACAATTTCACCGGCGTTC 1276
Query 1255 TTTTCCCGACGGAGCTGAGATTAGAAGCTTTTTCGCCGTCGTATTTGGA-CACTAAGTAC 1313
||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||||||||
Sbjct 1277 TTTTCCCGACGGAGCTGAGGTTAGAGGCTTTTTCGCCGTCGTATTTGGATC-CTAAGTAC 1335
Query 1314 TCGAGTCTTCGTCCGAGTATTGTGGATCCTAGGCCACAGACAACGGTAAACTACGGTAGA 1373
|||||| |||||||||||||||||||||||||| ||||| ||||| | ||||||||||||
Sbjct 1336 TCGAGTATTCGTCCGAGTATTGTGGATCCTAGGTCACAGTCAACGATCAACTACGGTAGA 1395
Query 1374 GTCTTGAGGCTTAGGTTTATTGTGAGCGGAAGAGTGAAAAGTCCGGTTAAAGTTACGATG 1433
|||||||||| |||| || ||| | ||||||||||||||||||||||||||| ||||||
Sbjct 1396 ATCTTGAGGCTGAGGTATACTGTAACCGGAAGAGTGAAAAGTCCGGTTAAAGTGACGATG 1455
Query 1434 TTATTTCCTTCGTTTACTACACATTCTTTCTCGATGCATCAAAGGCTTTTGGTTCTTGAT 1493
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 TTGTTTCCTTCGTTTACTACACATTCTTTCTCGATGCATCAAAGGCTTTTGGTTCTTGAT 1515
Query 1494 CATGTCATTTCTTTTAAACTCGGGATTAGCAAGATTTATGAAGTTAGAGTTAGGACTCCA 1553
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1516 CATGTCATTTCTTTTAGACTCGGGATTAGCAGGATTTATGAAGTTAGAGTTAGGACTCCA 1575
Query 1554 AGCTCTGCGATTCTTGCACCACCCGGTTATTACATGGTTTTCGTTGTAAACCAAGATATA 1613
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1576 AGCTCCCCGATTCTTGCACCGCCCGGTTATTACATGGTTTTCGTTGTAAACCAAGATATA 1635
Query 1614 CCCAGTGAAGGTCTTTGGGTACGTTTACAGTGAAAGTGATTCATCAACATTG 1665
|| ||||||||||||||||||||||||||||||| ||| | |||| ||||||
Sbjct 1636 CCTAGTGAAGGTCTTTGGGTACGTTTACAGTGAACGTGGT-CATCGACATTG 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68257719040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5