BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75630.2
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476712 jgi|Araly1|476712|fgenesh2_kg.2__1842__AT1G75630.1 603 1e-171
Ahg472216 jgi|Araly1|472216|fgenesh2_kg.1__2170__AT1G19910.1 460 7e-129
> Ahg476712 jgi|Araly1|476712|fgenesh2_kg.2__1842__AT1G75630.1
Length=719
Score = 603 bits (326), Expect = 1e-171
Identities = 387/413 (94%), Gaps = 18/413 (4%)
Strand=Plus/Plus
Query 74 AATTTGGTAACAGATCTCATCGGAGCAACAGTCATCAAAGAGCCAATGGCTTCTTCAGGT 133
|||||||||||||||||||||||||||||| ||| | |||||||||| | |||
Sbjct 1 AATTTGGTAACAGATCTCATCGGAGCAACA---ATC----A-TCAATGGCTTC-T--GGT 49
Query 134 TTCAGCGGCGATGAAACTGCGCCTTTCTTCGGATTCCTCGGCGCCGCCGCTGCGCTCGTT 193
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 50 TTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTCGGCGCCGCCGCTGCACTCGTT 109
Query 194 TTCTCCTGTATGGGAGCAGCGTACGGGACGGCGAAGAGTGGAGTTGGAGTTGCGTCGATG 253
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 110 TTCTCCTGTATGGGAGCAGCGTACGGGACGGCGAAGAGTGGCGTCGGAGTTGCGTCGATG 169
Query 254 GGAGTGATGAGACCTGAACTTGTTATGAAATCGATTGTTCCTGTTGTCATGGCTGGTGTG 313
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 170 GGAGTGATGAGACCTGAACTTGTTATGAAATCGATTGTGCCTGTTGTCATGGCTGGTGTT 229
Query 314 TTAGGTATTTATGGTTTGATCATCGCTGTTATCATCAGTACTGGGATTAACCCCAAGGCC 373
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 230 TTAGGTATTTATGGTTTGATCATCGCTGTCATCATCAGTACTGGGATTAACCCCAAGGCC 289
Query 374 AAGTCTTATTACCTATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTT 433
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 AAGTCTTATTACCTATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCT- 348
Query 434 GCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG 486
|| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 349 -CT---CTCT--GCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG 395
Score = 337 bits (182), Expect = 1e-91
Identities = 233/255 (91%), Gaps = 13/255 (5%)
Strand=Plus/Plus
Query 589 AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGA 516
Query 649 AGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTCTCATCTCGAGCTGGTCAGTC 708
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 AGCGCTTGCACTATATGGTCTCATTGTTGGTATCATCCTCTCATCTCGAGCTGGTCAGTC 576
Query 709 TAGAGCTGAGTGAAAGAAGTGGAGACTTATTGTTATTATCATCATGTCTCATATGAGAAG 768
|||||||||||||||||||||| |||||||||||| ||||| |||||||||||| |||||
Sbjct 577 TAGAGCTGAGTGAAAGAAGTGGTGACTTATTGTTAGTATCAACATGTCTCATATCAGAAG 636
Query 769 TTTCATGTGATGTGTAGCTTCTCCTTTCAGTTCTTTTTC-GTGAGTTTGAGTTCTGTTAT 827
||| | | |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 637 TTT-A-G----------CTTCTCCTTTCACTTCTTTTTTTGTGAGTTTGAGTTCTGTTAT 684
Query 828 TATTAGACACACTTG 842
||| ||||||||||
Sbjct 685 GATTGGACACACTTG 699
> Ahg472216 jgi|Araly1|472216|fgenesh2_kg.1__2170__AT1G19910.1
Length=709
Score = 460 bits (249), Expect = 7e-129
Identities = 323/360 (90%), Gaps = 0/360 (0%)
Strand=Plus/Plus
Query 127 TTCAGGTTTCAGCGGCGATGAAACTGCGCCTTTCTTCGGATTCCTCGGCGCCGCCGCTGC 186
|||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||
Sbjct 6 TTCAAGTTTCAGCGGCGATGAAACTGCTCCTTTCTTCGGATTCCTTGGCGCTGCCGCCGC 65
Query 187 GCTCGTTTTCTCCTGTATGGGAGCAGCGTACGGGACGGCGAAGAGTGGAGTTGGAGTTGC 246
||||||||||||||||||||||||||||||||||| |||||||| || ||||| || ||
Sbjct 66 TCTCGTTTTCTCCTGTATGGGAGCAGCGTACGGGACAGCGAAGAGCGGGGTTGGTGTAGC 125
Query 247 GTCGATGGGAGTGATGAGACCTGAACTTGTTATGAAATCGATTGTTCCTGTTGTCATGGC 306
||||||||| ||||||||||| || ||||| ||||||||||||||||| || || |||||
Sbjct 126 GTCGATGGGTGTGATGAGACCAGAGCTTGTGATGAAATCGATTGTTCCGGTGGTTATGGC 185
Query 307 TGGTGTGTTAGGTATTTATGGTTTGATCATCGCTGTTATCATCAGTACTGGGATTAACCC 366
||| || ||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 186 TGGAGTTTTAGGTATTTATGGTTTGATCATTGCTGTTATCATCAGTACCGGAATTAACCC 245
Query 367 CAAGGCCAAGTCTTATTACCTATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTG 426
||||||||||| || || ||||||||||||||||||||||||||||| || || |||||
Sbjct 246 TAAGGCCAAGTCGTACTATCTATTCGATGGCTATGCTCATCTCTCTTCCGGTCTTGCTTG 305
Query 427 TGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG 486
|||||| || |||||||| || ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 306 TGGTCTCGCCGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGTGTTAG 365
Score = 189 bits (102), Expect = 4e-47
Identities = 124/135 (92%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 589 AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGA 648
||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 366 AGCGAATGCACAACAACCCAAGTTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCTGA 425
Query 649 AGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTCTCATCTCGAGCTGGTCAGTC 708
|| ||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 426 GGCACTTGCCCTGTACGGTCTCATTGTTGGCATCATCCTCTCTTCTCGAGCTGGTCAGTC 485
Query 709 TAGAGCTGAGTGAAA 723
|||||| ||||||||
Sbjct 486 TAGAGCCGAGTGAAA 500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5