BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75640.1
Length=3586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926950 jgi|Araly1|926950|scaffold_202511.1 5036 0.0
> Ahg926950 jgi|Araly1|926950|scaffold_202511.1
Length=3466
Score = 5036 bits (2727), Expect = 0.0
Identities = 3226/3470 (93%), Gaps = 22/3470 (1%)
Strand=Plus/Plus
Query 10 TCTTTCCTTTCTCCACTCTAATGGCCGCAACGGTCATTTTCTTCCTTCACTTCGCCGCAA 69
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 TCTTTCCTTTCTCCACTCTAATGGCCGCAACGGTCATTTTCTTCCTTCACTTCACCGCCG 60
Query 70 TCTTCTTCTCCAGATTCCACCACACCTCCGCCATCTCATCAGAGACTCAAGCACTCACAT 129
|||||||||||||||||||||| || |||||| |||||||||||| || |||||||||||
Sbjct 61 TCTTCTTCTCCAGATTCCACCATACTTCCGCCGTCTCATCAGAGATTCTAGCACTCACAT 120
Query 130 CTTTCAAACTCTCTCTCCACGACCCTCTAGGAGCTCTCGAGTCCTGGAATCAATCATCTC 189
||||||||||||| ||||| |||||| ||||||||||||| || ||||||||||||||||
Sbjct 121 CTTTCAAACTCTCACTCCATGACCCTTTAGGAGCTCTCGAATCATGGAATCAATCATCTC 180
Query 190 CATCAGCTCCATGCGACTGGCACGGCGTTTCTTGCTTCTCCGGCCGTGTCCGTGAGCTTC 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATCAGCTCCATGCGACTGGCACGGCGTTTCTTGCTTCTCCGGCCGTGTCCGTGAGCTTC 240
Query 250 GTCTTCCTCGTCTCCACCTCACCGGCCACCTCAGTCCTCGACTCGGTGAGTTGACTCAGC 309
|||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 GTCTGCCTCGTCTTCGCCTCACCGGTCACCTCAGTCCTCGACTCGGTGAGTTGACTCAGC 300
Query 310 TCCGTAAACTAAGTCTTCACACCAACGACATAAACGGCGCCGTTCCTTCGTCTCTCTCTC 369
|||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 301 TCCGTAAACTCAGTCTTCACACCAACGACATAAACGGCGCCGTTCCTTCTTCTTTCTCTC 360
Query 370 GTTGTGTCTTCCTTAGAGCTCTTTATCTTCACTACAACTCCTTCTCCGGCGATTTTCCAC 429
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GTTGTGTCTTCCTTAGAGCGCTTTATCTTCACCACAACTCCTTCTCCGGCGATTTTCCAC 420
Query 430 CGGAGATACTGAATCTAC-GAAACCTCCAGGTCCTCAACGCTGCTCACAACTCACTCACC 488
|||||||||||||||| | | || ||||| || ||||||| |||||| ||||||||||||
Sbjct 421 CGGAGATACTGAATCT-CAGGAATCTCCAAGTGCTCAACGTTGCTCATAACTCACTCACC 479
Query 489 GGAAATCTATCCGACGTCACAGTCTCGAAGAGCCTTCGTTACGTCGATTTGTCTTCCAAT 548
|| ||| | |||||||| |||||||| ||||| || |||||||||||||| |||||||||
Sbjct 480 GGGAATATCTCCGACGTTACAGTCTCAAAGAGTCTCCGTTACGTCGATTTATCTTCCAAT 539
Query 549 GCAATATCCGGTAAGATTCCGGCGAATTTCTCAGCGGATTCATCTCTCCAGCTCATCAAC 608
||| ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 GCATTATCCAGTGAGATTCCGGCGAATTTCTCGGCGGATTCATCTCTCCAGCTCATCAAC 599
Query 609 CTCTCGTTCAACCACTTCTCCGGTGAGATCCCGGCTACATTGGGACAACTACAAGACCTC 668
||||||||||||| || ||||||||||||||||| |||||||| || |||||||||||
Sbjct 600 CTCTCGTTCAACCGTTTTTCCGGTGAGATCCCGGCGACATTGGGGCAGCTACAAGACCTA 659
Query 669 GAGTATCTCTGGCTAGACTCAAACCAATTACAAGGCACAATACCATCCGCATTAGCCAAC 728
|||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||||||||||
Sbjct 660 GAGTATCTATGGCTAGACTCAAACCAGTTACAAGGTACACTACCATCTGCATTAGCCAAC 719
Query 729 TGTTCATCGCTTATACACTTCAGCGTAACCGGTAA-TCACCTCACCGGTTTAATTCCGGT 787
||||| |||||||||||||||||||||||||| || ||| ||||||||| |||||||||
Sbjct 720 TGTTCGTCGCTTATACACTTCAGCGTAACCGGAAATTCA-CTCACCGGTCTAATTCCGGC 778
Query 788 TACTTTAGGCACGATTCGAAGCCTGCAGGTGATTTCATTATCGGAGAATTCATTTACCGG 847
||||| || | |||||||||||| || ||||||||||||||||| |||||| |||||||
Sbjct 779 GACTTTCGGGAAGATTCGAAGCCTCCAAGTGATTTCATTATCGGAAAATTCACTTACCGG 838
Query 848 TACAGTTCCGGTTAGTCTTCTATGTGGTTATTCAGGTTACAATTCCTCCATGCGAATCAT 907
||||||||||| |||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 839 TACAGTTCCGGCGAGTCTTGTATGTGGCTCTTCAGGTTACAATTCCTCCATGCGAATCAT 898
Query 908 TCAATTAGGAGTTAATAACTTCACGGGAATAGCTAAG-C--CGTCAAATGCAGCTTGCGT 964
|||||| |||||||||||||||||| ||||||||||| | ||||||| |||||||||||
Sbjct 899 TCAATTGGGAGTTAATAACTTCACGAGAATAGCTAAGCCATCGTCAAACGCAGCTTGCGT 958
Query 965 GAACCCTAATTTGGAGATTCTCGACATTCACGAGAATCGCATTAATGGCGATTTTCCCGC 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GAACCCTAATTTGGAGATTCTCGACATTCACGAGAATCGCATTAATGGCGATTTTCCCGC 1018
Query 1025 GTGGTTGACTGATTTGACCTCTTTAGTGGTTTTGGATATTTCTGGAAACGGTTTCTCCGG 1084
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1019 GTGGTTGACAGATTTGACCTCTTTAGTGGTTTTGGATATATCTGGAAACGGTTTCTCCGG 1078
Query 1085 TGGTGTTACGGCTAAAGTTGGGAAC-TTGATGGCGCTTCAGGAGCTGAGAGTAGCTAACA 1143
||| || ||| ||| ||||||||| ||| ||||||||||||||||||||| || ||||
Sbjct 1079 CGGTTTTCCGGATAAGGTTGGGAACTTTG-CGGCGCTTCAGGAGCTGAGAGTGGCAAACA 1137
Query 1144 ATTCACTTGTTGGAGAAATTCCGACGAGTATCCGTA-ATTGCAAATCGTTAAGAGTCGTT 1202
||||||| ||||| ||||||||||||||||| || | |||| | ||||||| ||||||||
Sbjct 1138 ATTCACTCGTTGGGGAAATTCCGACGAGTAT-CGGAGATTGTAGATCGTTACGAGTCGTT 1196
Query 1203 GATTTCGAAGGAAACAAGTTCTCGGGTCAGATTCCGGGTTTTCTAAGTCAGTTACGGAGC 1262
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1197 GATTTCGAAGGAAACAGGTTCTCGGGTCAGATTCCGGGTTTTCTAAGTCAGTTAGGGAGC 1256
Query 1263 CTGACAACGATATCTCTTGGAAGAAACGGGTTCTCGGGTCGGATTCCATCGGATCTTCTC 1322
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1257 CTGACAACGATATCTCTTGGAAGAAACGGGTTCTCGGGTCGGATTCCGTCGGATCTTCTC 1316
Query 1323 AGCTTGTACGGACTCGAGACATTGAATCTCAATGAAAATCATCTCACCGGAGCAATACCG 1382
||||| ||||||| || ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1317 AGCTTACACGGACTTGAAACATTGAATCTCAATGAAAATCATCTCACCGGAACTATACCG 1376
Query 1383 TCGGAGATAACAAAGCTAGCTAATCTTACCATCCTTAATCTCAGTTTCAACAGATTCTCC 1442
||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1377 TCGGAGATAACGAAGCTAGCTAATCTCAGCATCCTTAATCTCAGTTTCAACAGATTCTCC 1436
Query 1443 GGCGAAGTTCCGTCCAATGTGGGTGATCTGAAA-AGCTTGAGTGTTCTCAACATAAGTGG 1501
|||||| ||||||| |||||||||||||| ||| ||| |||||||||| |||||||||||
Sbjct 1437 GGCGAAATTCCGTCTAATGTGGGTGATCT-AAAGAGCGTGAGTGTTCTAAACATAAGTGG 1495
Query 1502 ATGCGGGTTAACGGGTCGGATACCGGTTAGCATTAGCGGATTAATGAAGCTTCAGGTTTT 1561
|||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||
Sbjct 1496 GTGCGGGTTAACGGGTCGGATACCGGTTAGCGTCGGTGGATTAATGAAGCTTCAGGTCTT 1555
Query 1562 GGATATAAGTAAACAGAGAATCTCTGGTCAGTTACCAGTCGAACTATTTGGTTTACCGGA 1621
|||| ||||||||||||||||||| ||| | ||||| |||||||| ||||| || |||||
Sbjct 1556 GGATTTAAGTAAACAGAGAATCTCCGGTGAATTACCTGTCGAACTCTTTGGCTTGCCGGA 1615
Query 1622 TCTTCAAGTGGTTGCTCTTGGAAACAACTTG--CTCGGCGGCGTCGTACCGGAAGGTTTC 1679
||||||||||||||||||||||||||| || || | |||||| ||||||||||||||
Sbjct 1616 TCTTCAAGTGGTTGCTCTTGGAAACAA--TGCACTTGACGGCGTTGTACCGGAAGGTTTT 1673
Query 1680 AGCAGCTTGGTTAGTCTTAAGTACTTAAATCTCAGTTCCAACTTATTCTCCGGACATATC 1739
||||| |||||||||||| || |||||||||||||||||||||||||||||| ||||||
Sbjct 1674 AGCAGTTTGGTTAGTCTTCGGTTCTTAAATCTCAGTTCCAACTTATTCTCCGGTCATATC 1733
Query 1740 CCAAAGAACTATGGATTTCTCAAGTCATTACAAGTGCTTTCGTTGTCTCACAATCGAATA 1799
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1734 CCAAAGAACTATGGATTTCTCAAGTCATTACAAGTGCTTTCGTTGTCTCATAATCGGATC 1793
Query 1800 TCCGGTACAATCCCGCCGGAGATTGGGAATTGTTCCAGTCTTGAGGTTCTTGAGCTTGGT 1859
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1794 TCCGGTTCAATCCCGCCGGAGATTGGGAATTGTACCAGTCTTGAGGTTCTTGAGCTCAGT 1853
Query 1860 TCTAATAGTTTAAAGGGTCACATTCCGGTTTACGTTTCCAAGTTGTCTCTTTTGAAGAAG 1919
|| || | ||||||||||||||||||||||||||||| || ||||||| | ||| |||
Sbjct 1854 TCAAACCGGTTAAAGGGTCACATTCCGGTTTACGTTTCTAAATTGTCTCGTCTGAGGAAA 1913
Query 1920 CTTGATTTGAGTCACAACAGTTTAACAGGGAGTATTCCGGATCAGATTTCTAAGGATTCT 1979
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 CTTGATTTGAGTCACAACAGTTTAACAGGGAGTATTCCGGATCAGATTTCTAAGGATTCG 1973
Query 1980 TCTCTAGAATCTCTCCTGCTTAATTCGAATTCTCTATCGGGTCGAATACCGGAATCTTTA 2039
||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1974 TCTCTTGAATCTCTCTTGCTGAATTCGAATTCTCTATCAGGTCGAATACCGGAATCTTTT 2033
Query 2040 TCAAGATTGACGAATCTAACCGCGTTGGATCTTTCGTCGAACAGATTGAATTCCACTATA 2099
|||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct 2034 TCAAGATTGACGAACCTAACATCGTTGGATCTTTCGTCTAACAGATTGAATTCTACTATA 2093
Query 2100 CCATCAAGTCTCTCTCGGCTTCGTTTCTTGAACTATTTCAACTTATCAAGAAACAGTTTG 2159
|||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 2094 CCATCAAGTCTCTCTCGGCTTCATTCCTTGAACTACTTCAACTTATCAAGAAACAGTTTG 2153
Query 2160 GAAGGGGAGATTCCAGAAGCTCTAGCTGCGCGTTTCACTAACCCGACCGTCTTTGTCAAG 2219
|||||| |||||||||||| | ||||||||||||||||||||||| | |||||||||||
Sbjct 2154 GAAGGGCAGATTCCAGAAGTTTTAGCTGCGCGTTTCACTAACCCGTCGGTCTTTGTCAAT 2213
Query 2220 AACCCGGGACTCTGCGGTAAACCGCTTGGTATAGAATGTCCAAACGTTCGAAGGAGAAGA 2279
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2214 AACCCGAGACTCTGCGGTAAACCGCTTGGTATAGAATGTCCAAACGTTCGGCGGAGAAGA 2273
Query 2280 AGAAGAAAGCTAATTCTACTAGTGACACTAGCAGTGGCTGGAGCTTTGTTGCTGTTACTC 2339
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2274 AGAAGAAAGCTAATTCTACTAGTGACACTAGCAGTTGCTGGAGCTTTATTGCTGTTACTC 2333
Query 2340 TGTTGTTGTGGTTATGTGTTCAGTTTATGGAAATGGCGGAACAAACTAAGATTGGGCTTG 2399
||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||
Sbjct 2334 TGTTGTTGTGGTTATGTGTTCAGTTTATGGAGATGGCGGAACAAAATAAGATCGGGCTTG 2393
Query 2400 AGTCGGGACAAGAAAGGGACCCCCTCACGTACATCTAGAGCGAGTTCTGGTGGGACAAGA 2459
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 2394 AGTCGGGACAAGAAAGGGACCCCGTCACGTACATCTCGAGCGAGTTCTGGTGGGACAAGA 2453
Query 2460 GGAGAAGACAACAATGGTGGACCTAAACTTGTGATGTTCAACAACAAGATCACGTTAGCT 2519
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 2454 GGAGAAGACAACAATGGTGGGCCTAAACTTGTGATGTTCAATAACAAGATCACATTAGCC 2513
Query 2520 GAAACCTTAGAAGCCACAAGACAATTTGACGAAGAGAACGTATTGAG-CAGAGGAAGGTA 2578
|||||||||||||||||| ||||||| |||||||| ||||||||||| | ||||||||||
Sbjct 2514 GAAACCTTAGAAGCCACACGACAATTCGACGAAGAAAACGTATTGAGTC-GAGGAAGGTA 2572
Query 2579 TGGGTTGGTCTTCAAGGCGACGTTTAGAGATGGGATGGTTCTATCGGTTCGTAGACTAAT 2638
|||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 2573 CGGGTTGGTTTTCAAGGCAACGTTTAGAGACGGGATGGTTCTATCGGTTCGTAGACTCAT 2632
Query 2639 GGATGGTGCTTCGATAACCGATGCAACGTTCCGTAACCAAGCTGAGGCTTTAGGTAGAGT 2698
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2633 GGACGGTGCTTCGATAACTGACGCAACGTTCCGTAACCAAGCTGAGGCTTTAGGTAGAGT 2692
Query 2699 GAAGCACAAGAACATCACGGTCTTGAGAGGTTATTACTGCGGACCACCTGATCTAAGACT 2758
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 2693 GAAGCACAAGAACATCACTGTCTTGAGAGGTTATTACTGCGGACCGCCCGATCTAAGACT 2752
Query 2759 TCTTGTTTACGACTACATGCCCAACGGAAACCTCGCTACGCTTTTGCAAGAAGCCTCTCA 2818
||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 2753 TCTAGTTTACGACTACATGCCCAACGGAAACCTCTCAACGCTTTTGCAAGAAGCATCTCA 2812
Query 2819 CCAAGACGGACATGTCTTGAACTGGCCAATGCGTCATCTCATTGCTCTTGGAATCGCTAG 2878
|||||||||||| |||||||||||||| |||||||||||||| || || |||||||||||
Sbjct 2813 CCAAGACGGACACGTCTTGAACTGGCCGATGCGTCATCTCATCGCCCTCGGAATCGCTAG 2872
Query 2879 AGGACTGTCCTTCTTGCATTCTTTATCAATCATTCACGGCGATCTTAAACCGCAAAACGT 2938
|||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2873 AGGACTCTCCTTTTTGCATTCTTTAGCAATCATTCACGGCGATCTTAAACCGCAAAACGT 2932
Query 2939 ACTCTTCGACGCTGACTTTGAAGCGCATTTGTCAGAATTCGGGTTAGATAGATTGACAGC 2998
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2933 TCTCTTCGACGCTGACTTTGAAGCGCATTTGTCAGAATTCGGGTTAGATAGATTGACGGC 2992
Query 2999 GTTGACTCCAGCTGAAGAACCATCCACTTCATCCACTCCCGTCGGGTCTTTAGGCTACAT 3058
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 2993 GTTGACTCCAGCTGAAGAACCGTCTACATCATCCACTCCCGTCGGGTCTTTAGGCTACAT 3052
Query 3059 TGCACCGGAAGCGGGTTTAACGGGTGAAACAAGTAAAGAGAGCGACGTGTACAGCTTCGG 3118
|||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 3053 TGCACCGGAAGCGGCATTAACGGGTGAACCAAGTAAAGAGAGTGACGTGTACAGCTTCGG 3112
Query 3119 GATCGTGTTGTTAGAGATCTTAACGGGGAAAAAGGCAGTGATGTTTACAGAGGATGAAGA 3178
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3113 GATCGTGTTGTTAGAGATTTTAACGGGGAAAAAGGCAGTGATGTTTACAGAGGATGAAGA 3172
Query 3179 TATAGTGAAATGGGTGAAGAGACAGTTACAAAAAGGTCAGATCGTTGAGTTGCTTGAACC 3238
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3173 TATAGTGAAATGGGTGAAGAGACAGTTACAAAAAGGTCAAATCGTTGAGTTGCTTGAACC 3232
Query 3239 GGGTTTGTTGGAGCTTGACCCGGAAAGTTCGGAGTGGGAAGAGTTCTTGTTAGGGATCAA 3298
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 3233 GGGTTTGTTGGAGCTTGACCCGGAAAGTTCAGAGTGGGAAGAGTTCTTGTTAGGGATTAA 3292
Query 3299 AGTTGGGTTGTTGTGTACTGGAGGAGACGTCGTTGATCGTCCGTCTATGGCTGATGTTGT 3358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3293 AGTTGGGTTGTTGTGTACCGGAGGAGACGTCGTTGATCGTCCGTCTATGGCTGATGTTGT 3352
Query 3359 TTTCATGCTCGAAGGGTGTAGAGTCGGTCCGGCGATTTCCTTGTCCGCCGATCCTACTTC 3418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3353 TTTCATGCTCGAAGGGTGTAGAGTCGGTCCGGCGATTTCCTTGTCCGCCGATCCTACTTC 3412
Query 3419 ACCTACTTCTCCC-GCCGCAACCGCCGTTTCTTGAAATTGCTGttttctt 3467
||||||||| ||| ||||| ||||||| |||||||||| ||| || ||||
Sbjct 3413 ACCTACTTC-CCCAGCCGCCACCGCCGCTTCTTGAAATAGCT-TTATCTT 3460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135446902307
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5