BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75670.1
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316494 jgi|Araly1|316494|fgenesh1_pm.C_scaffold_2001527 942 0.0
> Ahg316494 jgi|Araly1|316494|fgenesh1_pm.C_scaffold_2001527
Length=591
Score = 942 bits (510), Expect = 0.0
Identities = 566/593 (95%), Gaps = 4/593 (1%)
Strand=Plus/Plus
Query 123 ATGGAGGGATTAAAGCTCTCAGAAGCGGAATTGATGATTTTTATTCATCCTTCCCAGAGC 182
|||||||| |||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct 1 ATGGAGGGGTTAAAGCTATCAGAAGCGGAATTGATGATTTATATTCATCCTTCGAAGAGC 60
Query 183 AGAAACGTTTTTCAAGG-AATTTGTCGCGAGCTCAGTTCTCTTCTATTCCAGTATAATGA 241
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAAACGTTTTTC-AGGCGATTTGTCGCGAGCTCAGTTCTCTTCTATTCCAGTATAATGA 119
Query 242 AACCTTTGATGGAGTTCTATTGGCTTATGATGCTACTGTGAAAAGCAAACAAGCTAAAAT 301
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AACCTTCGATGGTGTTCTATTGGCTTATGATGCTACTGTGAAAAGCAAACAAGCTAAAAT 179
Query 302 CCTTACAGGACTTCATCCTTACTTTGGCGTCAGAGTTAACACTAGACTACTC-TTATTTG 360
|||| | ||||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 180 CCTTGCGGGACTTCATCCTTACTTTGGCGTTAGAGTTAACACTAGACTACTCCTT-TTTG 238
Query 361 ATCCTAAGCCCAAGAGTTTTGTAGAAGGGAAAATTGTGAAGATTTCTCCAGAGTCAATCC 420
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 ATCCTAAGCCCAAAAGTTTTGTAGAAGGGAAAATTGTGAAGATTTCTCCAGAGTCAGTCC 298
Query 421 ATGTTATTGTTCTTGGTTTCTCTGCTGCTGTCATTACAGACGTTGATATCCGGGAAGAGT 480
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 299 ATGTTATTGTTCTTGGTTTTTCTGCTGCAGTCATTACAGACGTTGATATCCGGGAAGAGT 358
Query 481 TCAAATACAGAGTGAGAGATGGTGAAGGTTCTTTCGTGAGCAGATCGCATAAACGGCATG 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 TCAAGTACAGAGTGAGAGATGGTGAAGGTTCTTTCGTGAGCAGATCGCATAAACGACATG 418
Query 541 CACTAAAGCTTGGAACTATGTTGCGCCTTCAAGTCCAAAGTTTTGATGAAGAGGTTATGC 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 CACTAAAGCTTGGAACAATGTTGCGCCTTCAAGTCCAAAGTTTTGATGAAGAGGTAATGC 478
Query 601 ATATAGCTGGATCTCTACTTCCGGAAAACACAGGATGCGTTAAGTGGCTCGAAAAGAAGT 660
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 479 ATATAGCTGGATCTCTACTTCCCGAAAACACAGGATGCGTTAAGTGGCTGGAAAAGAAGT 538
Query 661 CTGAAGAAGCTTTGCCTACGGATAGGGATCATAAAAGGAGGAAACTCGCCTGA 713
||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 539 CTGAAGAAGCTTTGCATACGGATAGGGATCATAAAAGGAGGAAAATCGCCTGA 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32861954454
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5